BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312863
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19250.1 | Symbols: FMO1 | flavin-dependent monooxygenase 1 ... 2575 0.0
AT5G45180.1 | Symbols: | Flavin-binding monooxygenase family p... 608 5e-173
> AT1G19250.1 | Symbols: FMO1 | flavin-dependent monooxygenase
1 | chr1:6650529-6653078 REVERSE LENGTH=1745
Length=1745
Score = 2575 bits (1394), Expect = 0.0
Identities = 1531/1598 (96%), Gaps = 5/1598 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTACTACGATAAGCTTACTTCTTCAAGAGTAGCGATCATCGGTGCTGGTGTT 60
||||||||| |||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 26 ATGGCTTCTAACTATGATAAGCTTACTTCTTCGAGAGTAGCCATCATCGGTGCTGGTGTT 85
Query 61 AGCGGATTAGCAGCCGCTAAGAACTTAGCTCATCACAACCCGACCGTATTCGAAGCCTCG 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 86 AGCGGATTAGCAGCCGCTAAGAACTTAGTTCATCACAACCCGACCGTATTCGAAGCCTCG 145
Query 121 GATTCAGTCGGAGGTGTTTGGAGGAGCTGCACTTACGAGACGACTAAATTACAATCGGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 GATTCAGTCGGAGGTGTTTGGAGGAGCTGCACTTACGAGACGACTAAATTACAATCGGCT 205
Query 181 CGAGTCGATTACGAGTTCTCCGACTTTCCATGGCCCAATAATAGAGATGACACAACTTTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 CGAGTCGATTACGAGTTCTCCGACTTTCCATGGCCCAATAATAGAGATGACACAACTTTC 265
Query 241 CCATCTTACGTTGAGATATTAGATTACTTGGAATCTTATGCTAAGCATTTTGATCTTCTC 300
||| ||||| ||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 266 CCACCTTACCTTGAGATATTAGATTACTTGGAATCTTATGCCAAACATTTTGATCTTCTC 325
Query 301 AAGTTCATGAAGTTTGGCTCTAAGGTCATCGAAGTTAGGTTCATCGGTGACGGCCAAACT 360
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct 326 AAATTCATGAAGTTTGGCTCTAAGGTCATCGAAGTAAGGTTCATCGGTGATGGCGAAACT 385
Query 361 CCTCAGATGGTTGACCTTGGTGCTTACGGCAATTTGTTGCCCGGAAAACCTGTATGGGAA 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 386 CCTCAGATGGTTGACCTTGGTGCTTACGGCAACTTGTTGCCCGGAAAACCTGTATGGGAA 445
Query 421 GTTGCAGTTCAGACCGGAGATTCTGGAGATATTCAGTGGCATGCATTTGAGTTCGTGGTA 480
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 GTTGCTGTTCAGATCGGAGATTCTGGAGATATTCAGTGGCATGCATTTGAGTTCGTGGTT 505
Query 481 GTGTGTACCGGAAAATACGGCGACGTTCCAAGAATACCTGCTTTTCCGGCAAAGAAAGGG 540
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 506 GTGTGTACCGGGAAATACGGCGACGTTCCAAGAATACCAGCTTTTCCGGCAAAGAAAGGG 565
Query 541 CCGGAGATATTTCAAGGAAAAGTAATGCATTCGATGGATTACTGCAAGTTAGAGAAAGAC 600
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 CCGGAGATGTTTCAAGGAAAAGTAATGCATTCGATGGATTACTGCAAGTTAGAGAAAGAA 625
Query 601 GAAGCTTCTAGTCTCCTCCGTGGCAAAAAAGTGGCCGTCATCGGCTTCAAGAAATCCGCC 660
|||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 626 GAAGCTTCTACTCTCCTCAGTGGCAAAAAAGTAGCCGTCATCGGCTTCAAGAAATCCGCC 685
Query 661 ATCGATTTGGCTTTAGAGTCTGCTTTAGCTAATCAAGG--A-GGAGGAAAAGCTTGCACA 717
|| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 686 ATTGATTTGGCTTTAGAGTCTGCTTTAGCTAATCAAGGGGAAGGAGGAAAAGCTTGCACA 745
Query 718 ATGGTGGTGAGAACTACTCATTGGGTGTTCCCACATTATTGGGTGTGGGGTTTACCATTC 777
|||||||||||||| |||||||||| | |||||||||||||||||||||| |||||||||
Sbjct 746 ATGGTGGTGAGAACAACTCATTGGGGGATCCCACATTATTGGGTGTGGGGCTTACCATTC 805
Query 778 TTCTTGTTCTACTCAACGAGAGCTTCTCAGTTCCTCCATGATAGGCCTAACCAAAGCTTC 837
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 TTCTTGTTCTACTCTTCGAGAGCTTCTCAGTTCCTCCATGATAGGCCTAACCAAAGCTTC 865
Query 838 CTTAGAACTCTCTTTTGCCTCATCTTCTCTCTTCTGCGTGCTGCGGTTTCCAAGTTCATC 897
||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||
Sbjct 866 CTTAGAACTCTCTTTTGCCTCCTCTTCTCTCTTCTGCGTGCCGTAGTTTCCAAGTTCATC 925
Query 898 GAATCATATGTTTTGTGGAAGCTACCTCTTGAGAAATATGGTCTTAAACCGGACCATTCT 957
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 926 GAATCATATGTTTTATGGAAGCTACCTCTTGAGAAATATGGTCTAAAACCAAACCATTCT 985
Query 958 TTCGAGGAAGACTACGCTTCTTGTCAAATGGCGATCATACCGGAGAAATTCTTTGAGGAA 1017
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 986 TTCGAGGAAGACTATGCTTCTTGTCAAATGGCGATCATACCGGAGAATTTCTTTGAGGAA 1045
Query 1018 GCGGATAAAGGGATGATCCGGTTTAAGAAATCATCAAAATGGTGGTTTTATGATGAAGGG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1046 GCGGATAAAGGGATGATCCGGTTTAAGAAATCATCAAAATGGTGGTTTTATGAAGAAGGG 1105
Query 1078 ATTGAGTTTGAAGATGGGACTACGTTAGAAGCTGATGTTGTGATACTTGCGACTGGTTAT 1137
|||| ||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 1106 ATTGTGTTTGAAGATGGGACGACATTAGAAGCTGATGTTGTGATACTTGCTACTGGTTAT 1165
Query 1138 GATGGTAAGAAGAAGCTCAAAGCTATTGTTCCCGAACCTTTCCGAACTTGGCTTGAGTTT 1197
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1166 GATGGCAAGAAGAAGCTCAAAGCTATTGTTCCTGAACCTTTCCGAACTTGGCTTGAGTTT 1225
Query 1198 CCATGCGGTGTCATGCCTTTATACAGGGGAACAATCCATCCATTGATACCGAACATGGGT 1257
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1226 CCAAGCGGTGTCATGCCTTTATACAGGGGAACAATCCATCCATTGATACCAAACATGGGT 1285
Query 1258 TTCGTGGGATACGTCCAAAGCAACTCGAACTTACACACATCAGAGCTACGTACGATGTGG 1317
||||| |||||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 1286 TTCGTAGGATACGTCCAAAGCAGCTCGAACTTACACACATCAGAGCTACGTTCAATGTGG 1345
Query 1318 CTAAGCCGGCTGGTGGATGAGAAATTCAGATTACCAAGCAAAGAGAAGATGTTGGATCAA 1377
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 CTAAGCCGGCTAGTGGATGAGAAATTCAGATTACCAAGCAAAGAGAAGATGTTGGATCAA 1405
Query 1378 TTCTTCAAAGAAATGGAAGTGACGAGAAATTCAAGCAGATTCTATAAACGTCATTGCATT 1437
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1406 TTCTTAAAAGAAATGGAAGTGACGAGAAACTCAAGCAGATTCTACAAACGTCATTGCATT 1465
Query 1438 TCCACTTTCAGCATCCAACATGCTGATGATATGTGCAACGACATGGGACTCAATCCTTGG 1497
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 TCCACGTTCAGCATCCAACATGCTGATGATATGTGCAACGACATGGGACTCAATCCTTGG 1525
Query 1498 CGTAAATCCAACTTGCTCCTTGAAGCTTTTAGTCCTTATGGTTCTCAAGATTACCGACTC 1557
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1526 CGTAAATCCAACTTCCTCCTTGAAGCTTTTAGTCCTTATGGTTCTCAAGATTACCGACTC 1585
Query 1558 GGTCAAGAAGAAAAAGAAGATG-G-CGGCTTAAACTAA 1593
||||||||||||||||||||| | | |||||||||||
Sbjct 1586 GGTCAAGAAGAAAAAGAAGATATGACTGCTTAAACTAA 1623
> AT5G45180.1 | Symbols: | Flavin-binding monooxygenase family
protein | chr5:18274179-18276586 REVERSE LENGTH=1380
Length=1380
Score = 608 bits (329), Expect = 5e-173
Identities = 539/637 (85%), Gaps = 28/637 (4%)
Strand=Plus/Plus
Query 873 GCGTGCTGCGGTTTCCAAGTTCATCGAATCATATGTTTTGTGGAAGCTACCTCTT-GAGA 931
|||||| | |||||||| ||||||||||||||||||||||||||||| || || ||||
Sbjct 756 GCGTGCCACAGTTTCCAAATTCATCGAATCATATGTTTTGTGGAAGCTTCC-GTTAGAGA 814
Query 932 AATATGGTCTTAAACCGGACCATTCTTTCGAGGAAGACTACGCTTCTTGTCAAATGGCGA 991
||||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||||
Sbjct 815 AATATGGTCTTAAACCGGACCATGCATTCGAGGAGGACTATGCTTCTTGTCAAATGGCGC 874
Query 992 TCATACCGGAGAAATTCTTTGAGGAAGCGGATAAAGGG-ATGATCCGGTTT-AAGAA--A 1047
|| | || |||||||||||||| ||||||||| ||||| ||||||| |||| || || |
Sbjct 875 TCGTGCCAGAGAAATTCTTTGAAGAAGCGGAT-AAGGGAATGATCC-GTTTCAA-AAGGA 931
Query 1048 TCATCAAAATGGTGGTTTTATGATGAAGGGATTGAGTTTGAAGATGGGACTACGTTAGAA 1107
|| |||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 932 -CAACAAATTGGTGGTTTTATGATGAAGGGATTGAGTTTGAGGATGGCACTACCCTAGAA 990
Query 1108 GCTGATGTTGTGATACTTGCGACTGGTTATGATGGTAAGAAGAAGCTCAAAGCTATTGTT 1167
||||||||||||||||||||||| || |||||||| | ||||||||||||||| |||||
Sbjct 991 GCTGATGTTGTGATACTTGCGACAGGATATGATGGCATGAAGAAGCTCAAAGCCATTGT- 1049
Query 1168 CCC-GAACCTTTCCGAACTTGGCTTGAGTTTCCATGCGGTGTCATGCCTTTATACAGGGG 1226
||| |||||||| ||| | |||||||||||||| || ||| |||||||||||||||||||
Sbjct 1050 CCCTGAACCTTTTCGATCATGGCTTGAGTTTCCTTGGGGTATCATGCCTTTATACAGGGG 1109
Query 1227 AACAATCCATCCATTGATACCGAACATGGGTTTCGTGGGATACGTCCAAAGCAACTCGAA 1286
|||||||||||| |||||||| |||||||||||| | ||||| || ||||||| ||| ||
Sbjct 1110 AACAATCCATCCGTTGATACCAAACATGGGTTTCATCGGATATGTTCAAAGCAGCTCTAA 1169
Query 1287 CTT-ACACACATCAGAGCTACGTACGATGTGGCTAAGCCGGCTGGTGGATGAG-AAATTC 1344
|| | | ||||||| ||| | | | |||||| || | ||| |||| | | ||||||
Sbjct 1170 TTTGAAAT-CATCAGAATTACATTCAAGGTGGCTCAGTCAGCTCTTGGACG-GTAAATTC 1227
Query 1345 AGATTACCAAGCAAAGAGAAGATGTTGGATCAATTC-TTCAAAGAAATGGAAGTGACGAG 1403
| |||||| |||||||| |||||||||||||||||| || ||||||||| | || | |||
Sbjct 1228 ACATTACCGAGCAAAGAAAAGATGTTGGATCAATTCCTT-AAAGAAATGCACGTTATGAG 1286
Query 1404 AA-ATTCAAGCAGATTCTAT-AAACGTCATTGCATT-TCCACTTTCAGCATCCAACATGC 1460
|| || |||||||||||| | ||| ||||||| || |||||||||||||| ||||||||
Sbjct 1287 AAGAT-CAAGCAGATTCT-TCAAAAATCATTGC-TTCTCCACTTTCAGCATTCAACATGC 1343
Query 1461 TGATGATATGTGC-AACGACATGGGA-CTCAATCCTT 1495
|||||| ||| | || |||||| | ||||| ||||
Sbjct 1344 CGATGATTTGT-CTAAAGACATGA-ATCTCAAGCCTT 1378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78664254015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5