BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312882
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19470.1 | Symbols: | Galactose oxidase/kelch repeat superf... 621 4e-177
AT1G19460.1 | Symbols: | Galactose oxidase/kelch repeat superf... 577 9e-164
> AT1G19470.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:6741296-6742534 FORWARD LENGTH=1239
Length=1239
Score = 621 bits (336), Expect = 4e-177
Identities = 399/430 (93%), Gaps = 2/430 (0%)
Strand=Plus/Plus
Query 1 ATGGTTAATATCTCTGAAATTCTCGACGACTCTAACGACGGCGGCAATCCAAACAAGAAA 60
||||| |||||||||||||||| |||||||||||| |||||| || ||||||||||||||
Sbjct 1 ATGGTCAATATCTCTGAAATTCCCGACGACTCTAATGACGGCTGCGATCCAAACAAGAAA 60
Query 61 CCAGAAGAACAAGTTTTAAGAAGAAGTAGCCGAATCTCGACAAGAAACGAGAATCAAAAC 120
||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 61 CCAGAAGAACAAGTTTTGAGAAGAAGTAGAAGAATCGCGACAAGAAACGAGAATCAAAAC 120
Query 121 AAGAAGCCCAAGGAAGAAGAAAAAGAAGATAATCGCTCGATATCTTTCCCAATTCCAGAC 180
|||||||||||||| |||||| ||||||||||||||||| ||||||| ||||||||| ||
Sbjct 121 AAGAAGCCCAAGGAGGAAGAAGAAGAAGATAATCGCTCGGTATCTTTTCCAATTCCAAAC 180
Query 181 GATCTCACCGAAGCTTGCGTCGCACTCATCCGGAGATGTGATTACCCTAGTCTGTCTTCC 240
|| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 181 GAGCTCACCGAAGCTTGCGTCGCACTCATCCGGAAATGTGATTACCCTAGTCTATCTTCC 240
Query 241 GTCTCAAGTTACTTTTTCACTCTCATCGCTTCGTCAAGACTCTACGAAACGCGTTCGCGC 300
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 241 GTCTCAAGTTACTTTTTCAATCTCATCGCTTCGTCAGGACTCTACGAAACGCGTTCGCGC 300
Query 301 CTCGGTCTTTCTGAAACCTTTCTTTACGCCGCCATTAAATTCCCTGATGAC-ATTCCCCC 359
||||||||||| ||||||||||||||||||||||| ||||||||||| || | |||| |
Sbjct 301 CTCGGTCTTTCCGAAACCTTTCTTTACGCCGCCATCAAATTCCCTGA-CACAAATCCCGC 359
Query 360 AAAATGGTACATTCTCCATCGAAACAAGGTTTCTTCTTTACGTTTGACGGAACTCAGCTC 419
||| ||||||||||||||||||||||||||||||||||||||| |||||||| || | ||
Sbjct 360 AAACTGGTACATTCTCCATCGAAACAAGGTTTCTTCTTTACGTCTGACGGAAGTCGGTTC 419
Query 420 ACTTCCACCT 429
||||||||||
Sbjct 420 ACTTCCACCT 429
Score = 448 bits (242), Expect = 7e-125
Identities = 303/331 (92%), Gaps = 9/331 (3%)
Strand=Plus/Plus
Query 776 CGTACTCTTGGACATCCAATAGTATAGTCGTGTATGATCCAAAGGACAAGACTTGGAGAC 835
||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||
Sbjct 916 CGTACTCTTGGACATCC---A--ATAGTCGTGTATCATCCAAAGGACAAGACTTGGAGAC 970
Query 836 CTGTGAAAGGTGAATCTTTG-GGAAGATTGCCTAGTTATCTCTTTGATAAGTCTGAAATG 894
|||||||||||||||| ||| || || |||||||||||| ||||| |||||||||||||
Sbjct 971 CTGTGAAAGGTGAATCCTTGTGG-AGTTTGCCTAGTTATTTCTTTTCTAAGTCTGAAATG 1029
Query 895 GCGAATTTTGGTGGAAAGTTGGTGATTTTGGGTAGTAACGAGAGCTATGTTACTGGTGAT 954
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1030 GCGAATTTTGGTGGAAAGTTGGTGATTTTGGGCAGTAACAAGAGCTATGTTACTGGTGAT 1089
Query 955 TGCATTGGGGAAAAAGGTATTTGGTGCGTAATGATCGCGTTGGAAAAACGTGAAGGAGAA 1014
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1090 TGCATTGGAGAAAAAGGTATTTGGTGCGTAATGATCGAGTTGGAAAAACGTGAAGGAGGT 1149
Query 1015 GAGATTTGGGGGATGGTCGAATCACTCGACTGTGTGCTTGGAGACATAAACTTTCTGAT- 1073
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1150 GAGATTTGGGGGAAGGTTGAATCACTCGACTGTGTGCTTGGAGACATAAACTTTCTG-TC 1208
Query 1074 GGTTAGGCTATGTCGAACAGTGACCATTTGA 1104
|||| |||| |||| ||| |||||||||||
Sbjct 1209 GGTTCGGCTTTGTCAAACTCTGACCATTTGA 1239
Score = 219 bits (118), Expect = 6e-56
Identities = 162/184 (88%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 579 ACAGAGTTGGGAATCTTTGCCTGGTCCGTACCCTAAAACTAGTTCGGGTTGCGAGTGGAA 638
||||| ||||||||||||||||||||||||||||| ||||||| |||||| | |||
Sbjct 681 ACAGATTTGGGAATCTTTGCCTGGTCCGTACCCTAGAACTAGTGCGGGTTCCCAGTTTTC 740
Query 639 AACATATGTGGTGATGGAAGAGAAGTTATACATTTTGGATTCTAAATTTTGTTTGGTTTA 698
|| ||| |||||||||||| ||||||||||| |||| |||||||||||||||||||||
Sbjct 741 TGCACATGCGGTGATGGAAGACAAGTTATACATGTTGGGTTCTAAATTTTGTTTGGTTTA 800
Query 699 CGAACCAAAAAGAAACATTGAATGGGACGCATCCGTCGGAGCAACTCCTTTAATGGATTT 758
|||||||||||||||| ||||||||||||||||||||||||||| || |||| |||||
Sbjct 801 CGAACCAAAAAGAAACGGTGAATGGGACGCATCCGTCGGAGCAACCCCATTAAAAGATTT 860
Query 759 GTGG 762
||||
Sbjct 861 GTGG 864
> AT1G19460.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:6738484-6739734 FORWARD LENGTH=1251
Length=1251
Score = 577 bits (312), Expect = 9e-164
Identities = 397/436 (91%), Gaps = 14/436 (3%)
Strand=Plus/Plus
Query 1 ATGGTTAATATCTCTGAAA-TTCTCGACGACTCTAACGACGGCGGCA-ATCCAAACAAGA 58
|||| |||||||||||||| ||| || ||||||||| |||||||| | ||||||||||||
Sbjct 1 ATGGCTAATATCTCTGAAATTTC-CGGCGACTCTAATGACGGCGG-AGATCCAAACAAGA 58
Query 59 AACCAGAAGAACAAGTTTTAAGAAGAAGTAGCCGAATCTCGACAAGAAACGAGAATCAAA 118
||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 59 AACCAGAAGAACAAGTTTTGAGAAGAAGTAGAAGAATCGCGACAAGAAACGAGAATCAAA 118
Query 119 ACAAGAAGCCCAAGGAAGAAGAA-AAAGAAGATAATCGCTCGATATCTTTCCCAATTCCA 177
|||||||||||||||| |||||| ||| |||||||||||||| ||||||| |||||||||
Sbjct 119 ACAAGAAGCCCAAGGAGGAAGAAGAAA-AAGATAATCGCTCGGTATCTTTTCCAATTCCA 177
Query 178 GACGATCTCACCGAAGCTTGCGTCGCACTCATCCGGAGATGTGATTACCCTAGTCTGTCT 237
|||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 178 AACGAGCTCACGGAAGCTTGCGTCGCACTCATCCGGAAATGTGATTACCCTAGTCTATCT 237
Query 238 TCCGTCTCAAGTTACTTTTTCACTCTCATCGCTTCGTCAAG-ACTCTACGAAACGCGTTC 296
|||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||
Sbjct 238 TCCGTCTCAAGTTACTTTTTCAATCTCATCGCTTCGTC-AGAACTCTACGAAACGCGTTC 296
Query 297 GCGCCTCGGTCTTTCTGAAACCTTTCTTTACGCCGCCATTAAATTCCCTGATGAC-ATTC 355
||||||||||||||| ||||||||||||||||||||||| ||||||||| || | ||
Sbjct 297 GCGCCTCGGTCTTTCCGAAACCTTTCTTTACGCCGCCATCCGATTCCCTGA-CACAAATC 355
Query 356 CCCCAAAATGGTACATTCTCCATCGAAACAAGGTTTCTTCTTTACGTTTGACGGAA-CTC 414
||||||| ||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 356 CCCCAAACTGGTACATTCTCCATCGAAACAAGGTTTCTTCTTTACGTTTGA-GCAAACTC 414
Query 415 -AGCTCACTTCCACCT 429
| ||||||||||||
Sbjct 415 GAA-TCACTTCCACCT 429
Score = 385 bits (208), Expect = 6e-106
Identities = 296/336 (88%), Gaps = 15/336 (4%)
Strand=Plus/Plus
Query 777 GTACTCTTGGACATCCAATAGTATAGTCGTGTATGATCCAAAGGACAAGACTTGGAGACC 836
|||||||||||||||| | |||||||| ||| ||||||||||||| || ||||||||
Sbjct 923 GTACTCTTGGACATCC---A--ATAGTCGTTTATAATCCAAAGGACAAAACGTGGAGACC 977
Query 837 TGTGAAAGGTGAATCTTTG-GGAAGATTGCCTAGTTA-TCT-CTT-TGATAAGTCTGAAA 892
||||||||||||||||||| || | |||||||||||| | | || |||| ||||||||
Sbjct 978 TGTGAAAGGTGAATCTTTGAGG-ACATTGCCTAGTTATTTTGTTTCTGATGGGTCTGAAA 1036
Query 893 TGGCGAATTTTGGTGGAAAGTTGGTGATTTTGGGTAGTAACGAGAGCT---ATGTTACTG 949
|||||||||||||||||||||||||||||||||| ||||| | ||||| ||| |||||
Sbjct 1037 TGGCGAATTTTGGTGGAAAGTTGGTGATTTTGGGCAGTAATGGGAGCTGCTATGATACTG 1096
Query 950 GTGATTGCATTGGGGAAAAAGGTATTTGGTGCGTAATGATCGCGTTGGAAAAACGTGAAG 1009
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1097 GTGATTGCATTGGAGAAAAAGGTATTTGGTGCGTAATGATCGAGTTGGAAAAACGTGAAG 1156
Query 1010 GAGAAGAGATTTGGGGGATGGTCGAATCACTCGACTGTGTGCTTGGAGACATAAACTTTC 1069
||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1157 GAGGTGAGATTTGGGGGAAGGTTGAATCACTCGACTGTGTGCTTGGAGACATAAACTTTC 1216
Query 1070 TGAT-GGTTAGGCTATGTCGAACAGTGACCATTTGA 1104
|| | |||| |||| |||| ||| ||||| |||||
Sbjct 1217 TG-TCGGTTTGGCTTTGTCAAACTCTGACCCTTTGA 1251
Score = 147 bits (79), Expect = 3e-34
Identities = 156/192 (81%), Gaps = 9/192 (5%)
Strand=Plus/Plus
Query 577 AAACAGAGTTGGGAATCTTTGCCTGGTCCGTACCCTAAAACTAGT-TCGGGTTGCGAGTG 635
||||||| ||||||||||||||||||||||||||||||||||||| | || || | |||
Sbjct 679 AAACAGATTTGGGAATCTTTGCCTGGTCCGTACCCTAAAACTAGTAT-GGATTCCCAGTT 737
Query 636 GAAAACATATGTGGTGATGGAAGAGAAGTTATACATTTTGGATTCTAAATTTTGTTTGGT 695
|| ||| |||||||||||| |||||||||||||||| || | || | ||| |
Sbjct 738 TTTTGCACATGCGGTGATGGAAGACAAGTTATACATTTTGGGCTC-ACGTT--GCTTGAT 794
Query 696 TTACGAACCAAAAAGAAACATTGAATGGGACGCATCCGTCGGA-GCAACTCCTTTAATGG 754
||||||||||||||||||| ||||||||||||| ||||| | |||| ||| || |||
Sbjct 795 TTACGAACCAAAAAGAAACGGTGAATGGGACGCAACCGTCA-ATGCAAATCCAATA-TGG 852
Query 755 ATT-TGTGGAAA 765
| | ||||||||
Sbjct 853 AATCTGTGGAAA 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54116187510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5