BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312884
Length=1944
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19490.1 | Symbols: | Basic-leucine zipper (bZIP) transcrip... 2073 0.0
AT1G19510.1 | Symbols: ATRL5, RSM4, RL5 | RAD-like 5 | chr1:675... 355 8e-97
AT1G19500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 316 4e-85
> AT1G19490.1 | Symbols: | Basic-leucine zipper (bZIP) transcription
factor family protein | chr1:6751673-6753999 REVERSE
LENGTH=1736
Length=1736
Score = 2073 bits (1122), Expect = 0.0
Identities = 1321/1413 (93%), Gaps = 30/1413 (2%)
Strand=Plus/Plus
Query 559 TTGGAGCCTATATCATCGAGTTGTTG--C-TCG---TCTTCTTCGTCTGGGGAGGAGGGT 612
|||||||||||||||||||||||||| | ||| |||||||| |||||||||||| |
Sbjct 47 TTGGAGCCTATATCATCGAGTTGTTGCTCGTCGTCTTCTTCTTCTTCTGGGGAGGAGAAT 106
Query 613 ACGGCGGCGGCGAATATGACGGAGATGGAGGCGGCAGAGGCATTGGCGGATTTAGCGCAG 672
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 107 ACTGCGGCGGCGAACATGACGGAGATGGAGGCGGCAGAAGCATTGGCGGATTTAGCGCAG 166
Query 673 CTTGCGATAATGCGAGAGCAGGTTTTCGAATCCGCGGCGAGTTGGGGAAGTAAAGGAAAA 732
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 167 CTTGCGATAATGCGAGAGCAGGTTTTCGAATCTGCAGCGAGTTGGGGAAGTAAAGGGAAA 226
Query 733 CGAGTGAGGAAGCGAGTCAAGACTGAGTCTCCTCCGTCTGACTCGCTTTTGAAACCACCT 792
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 227 CGGGTGAGGAAGCGAGTCAAGACTGAGTCTCCTCCTTCTGACTCGCTTTTGAAACCACCT 286
Query 793 GACTCTGAAACGTTACCTACTCCGGATCTAGCTGAGGAACGATTAGTgaaagaag-a-a- 849
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 287 GACTCTGATACGTTACCTACTCCGGATCTAGCTGAGGAACGATTAGTGAAAGAAGAAGAG 346
Query 850 gaagaagaagaagTT----C---AAC----CAA-TAACTAAAGCTCCGGTTAAAACTGAA 897
||||||||||||||| | ||| || |||||||||||||||||||| |||||
Sbjct 347 GAAGAAGAAGAAGTTGAACCAATAACTAAAGAACTAACTAAAGCTCCGGTTAAATCTGAA 406
Query 898 ATGAATGGTGAAACACCTAAACTAAATCTTGCTTCTACACT--T-AGGTGTAGTAGATCA 954
|| ||||||||||||||||||| || ||||||||| || || | |||||||||||||||
Sbjct 407 ATCAATGGTGAAACACCTAAACCAATTCTTGCTTCGACTCTAATAAGGTGTAGTAGATCA 466
Query 955 AATGGCTGTGGCCGATCGAGGCATAATTTAAGTGAGGCTGAAAGAGAAGAACGTAGAATC 1014
||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 467 AATGGTTGTGGCCGATCAAGACAGAATTTAAGTGAGGCTGAAAGAGAAGAACGTAGAATC 526
Query 1015 CGAAGAATTTTAGCTAACAGAGAATCTGCGAGGCAGACAATTCGACGAAGACAGGCAATG 1074
|||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 527 AGAAGGATATTAGCTAATAGAGAATCTGCGAGGCAGACAATTCGGCGAAGACAGGCAATG 586
Query 1075 TGCGAGGAGTTGAGTAAAAAAGCAGCTGATCTGACATATGAGAATGAGAATTTGAGGAGG 1134
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TGTGAGGAGTTGAGTAAAAAAGCAGCTGATCTGACATATGAGAATGAGAATTTGAGGAGG 646
Query 1135 GAAAAGGATTGGGCTTTGAAAGAGTTTCATTCTTTGGAGACGATTAACAAGCATTTAAAG 1194
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 647 GAAAAGGATTGGGCTTTGAAAGAGTTTCAGTCTTTGGAGACGATTAACAAGCATTTAAAG 706
Query 1195 GAACAGGTATCGAAGTCAGTAAAACCCGATACAAAAGAACCTGAAGAATCGACCAAA-CC 1253
|||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| || ||
Sbjct 707 GAACAGGTATTGAAGTCAGTAAAACCCGATACAAAAGAGCCTGAAGAATC-ACCCAAGCC 765
Query 1254 ATCACAAGTTGATATGTCTACATCATCTACTCCGTTTTACTTCTACAACCAGAATCCATA 1313
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 ATCACAAGTTGAGATGTCTACATCATCTACTCCGTTTTACTTCTACAACCAGAATCCATA 825
Query 1314 TCAGCTTTTCTACTGGCCTCATGTTACTCAATCATCAAATCCAACGATATCGCCACTTGA 1373
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 826 TCAGCTTTTCTGCTGGCCTCATGTTACTCAATCATCAAATCCAATGATATCGCCACTTGA 885
Query 1374 ATTCGCC-ACATCGGGAGGAGCTTCTGCTAAAAGTATGACCTCACAGGAGCATGAAAATC 1432
|||| || || |||||||||||||||||||||| ||| ||| | |||||||||||||||
Sbjct 886 ATTC-CCTACTTCGGGAGGAGCTTCTGCTAAAACTATTACCACGCAGGAGCATGAAAATG 944
Query 1433 CTGCAGATGATAATGGGCAAAAAACTCATTTTTACGTTGTACCTTGCCCTTGGTTTCTCC 1492
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 945 CTGCAGATGATAATGGGCAAAAAACTCACTTTTACGTTGTACCTTGCCCTTGGTTTCTCC 1004
Query 1493 CTCCTCCTGATCAGAGCAACAGTGTTCCCTTCGGGCTTCAAAATACACAAAGAGGTACTT 1552
||||||||||||| ||||| ||||||| |||||||||||| ||||||||||||||||||
Sbjct 1005 CTCCTCCTGATCACAGCAATGGTGTTCCTTTCGGGCTTCAAGATACACAAAGAGGTACTT 1064
Query 1553 TTTCAAACGGGCACCATATCGATGATTCTTCTGCAAGACCGATAGAGGTCACAGAAACTC 1612
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1065 TTTCAAACGGGCACCATATCGATGATTCTTCTGCAAGACCGATGGATGTCACAGAAACTC 1124
Query 1613 TGCGGTCCCATCTACCAACTAGAATCAAAGAAGAAGACTCTGGTTCACCCGAAACCAGAC 1672
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1125 CGCGGTCCCATCTACCAACTAGAATCAAAGAAGAGGACTCTGGTTCACCCGAAACCAGAC 1184
Query 1673 CTTTATATGATCTCAACGAATCTGCAACTGAAGTCCTCTCAGAAGGAGGAGATG-ATTTT 1731
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1185 CTTTATATGATCTCAACGAATCTGCTACTGAAGTCCTCTCAGAAGGAGGAGATGGATTT- 1243
Query 1732 CCTATAACGCAACAAGATTATAGTTTAAAGCATGAAGATGTTTCCGAGACAACTAATGGA 1791
||| ||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1244 CCTGTAACGCAGCAAGCTTATAGTTTAAAGCATGAAGATGTTTCTGAGACAACTAATGGA 1303
Query 1792 GTTACACTGATGCCGCCTGGTCATCATGTTTTGATTTCTCTACCGGGGAAAAAGCAAGGA 1851
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1304 GTTACACTGATGCCGCCTGGTCATCATGTTTTGATTTCTCTACCGGAGAAAAAGCATGGA 1363
Query 1852 TCTTTGGCTGCAGCGGAAGCGAGAAAGAGACGGAAAGAACTCACAAGGCTCAAGAACCTC 1911
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1364 TCGTTGGCTGCAGCGGAAGCTAGAAAGAGACGGAAAGAACTCACAAGGCTCAAGAACCTC 1423
Query 1912 CATGGCCGTCAATGTCGGATGCAAGTCGGATAA 1944
||||||||||||||||||||||| |||||||||
Sbjct 1424 CATGGCCGTCAATGTCGGATGCAGGTCGGATAA 1456
> AT1G19510.1 | Symbols: ATRL5, RSM4, RL5 | RAD-like 5 | chr1:6756284-6757377
REVERSE LENGTH=589
Length=589
Score = 355 bits (192), Expect = 8e-97
Identities = 200/204 (98%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 1 ATGGCCTCTAGTTCTATGAGCTCGAGCTCCTCTTGGACGTCTAAGCAAAACAAGATGTTC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 88 ATGGCCTCTAGTTCTATGAGCTCGAGCTCTTCTTGGACGTCTAAGCAAAACAAGATGTTC 147
Query 61 GAGAGGGCTTTAGCCGTTTACGATAAAGACACTCCCGACCGTTGGCAAAACGTGGCTAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 GAGAGGGCTTTAGCCGTTTACGATAAAGACACTCCCGACCGTTGGCAAAACGTGGCTAAA 207
Query 121 GCAGTCGGAAGTAAATCTGCAGAGGAAGTCAAACGTCACTACGACATCCTCGTTGAAGAT 180
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 208 GCAGTTGGAAGTAAATCTGCAGAGGAAGTTAAACGTCACTACGACATCCTCGTTGAAGAT 267
Query 181 CTCATGAACATCGAAAAAGACTTA 204
||||||||||||||| ||||||||
Sbjct 268 CTCATGAACATCGAACAAGACTTA 291
Score = 69.4 bits (37), Expect = 1e-10
Identities = 42/44 (95%), Gaps = 2/44 (5%)
Strand=Plus/Plus
Query 206 TTAATGAAGAATATGAGAATCCAGTGAAGTCTGTTACATTGATG 249
|||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 364 TTAATGAAGAATATGAGAATCCAGTGAAGT-TGTTACAT-GATG 405
> AT1G19500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant
structures; EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, C globular stage, petal differentiation
and expansion stage; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G35765.1); Has 9 Blast
hits to 9 proteins in 2 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:6754786-6755684 REVERSE
LENGTH=557
Length=557
Score = 316 bits (171), Expect = 4e-85
Identities = 205/222 (92%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 334 ATGGCGAAAATATCCGTGGCCGTGCTGTTGTCGGTATTGCTAATTGTTTCGATAAATTCG 393
|||||||||||||| ||||||||||||||||||||| ||||| |||| |||||||| |||
Sbjct 149 ATGGCGAAAATATCGGTGGCCGTGCTGTTGTCGGTAATGCTACTTGTCTCGATAAACTCG 208
Query 394 GTGGATATCTTGGCCGAGGAACAGCCGACGGTTGGGCAGAGGATAGACTCGGCCGTGACG 453
||||||||||||||||||||| | || ||||||||||||||| ||||||| ||| |||||
Sbjct 209 GTGGATATCTTGGCCGAGGAAGAACCAACGGTTGGGCAGAGGGTAGACTCCGCCATGACG 268
Query 454 GGTGTCACCAATGCATTCAATGAACACGGCGGCCCACAAGCCGTTGACACCGTATCATCC 513
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 269 AGTGTCACCGATGCATTCAATGAACACGGCGGCCCACAAGCCGTCGACACCGTATCATCC 328
Query 514 ACCGTCAAATCCGTTTACGGATGGTTCAGTGAAAAAGCCAAG 555
||| ||||||||||||||||||||||| |||| |||||||||
Sbjct 329 ACCTTCAAATCCGTTTACGGATGGTTCGGTGATAAAGCCAAG 370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96284645310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5