BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312889
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19580.1 | Symbols: GAMMA CA1 | gamma carbonic anhydrase 1 |... 1175 0.0
AT5G66510.2 | Symbols: GAMMA CA3 | gamma carbonic anhydrase 3 |... 209 3e-53
> AT1G19580.1 | Symbols: GAMMA CA1 | gamma carbonic anhydrase 1
| chr1:6774763-6777456 FORWARD LENGTH=1366
Length=1366
Score = 1175 bits (636), Expect = 0.0
Identities = 687/712 (96%), Gaps = 2/712 (0%)
Strand=Plus/Plus
Query 190 TCAAGGCATCGGACACTGATGAACGTATTTGATAAGGCTCCGATTGTGGATAAGGAAGCT 249
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 292 TCAAGGCATCGGACACTGATGAATGTATTTGATAAGGCTCCGATTGTGGACAAGGAAGCT 351
Query 250 TTTGTGGCACCGAGCGCCTCAGTTATTGGGGACGTTCAGATTGGAAGAGGATCGTCCATT 309
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 352 TTTGTGGCACCAAGCGCCTCAGTTATTGGGGACGTTCACATTGGAAGAGGATCGTCCATT 411
Query 310 TGGTATGGATGCGTATTACGAGGGGATGTGAACACCGTAAGTGTTGGGTCAGGCACTAAT 369
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 412 TGGTATGGATGCGTATTACGAGGCGATGTGAACACCGTAAGTGTTGGGTCAGGAACTAAT 471
Query 370 ATTCAGGACAACTCACTTGTGCATGTGGCAAAATCAAACTTAAGCGGGAAAGTGCACCCA 429
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 472 ATTCAGGACAACTCACTTGTGCATGTGGCAAAATCAAACTTAAGCGGGAAGGTGCACCCA 531
Query 430 ACCATCATTGGAGACAATGTAACCATTGGTCATAGTGCTGTTTTACATGGATGTACTGTC 489
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 ACCATAATTGGAGACAATGTAACCATTGGTCATAGTGCTGTTTTACATGGATGTACTGTT 591
Query 490 GAGGATGAAACCTTTATCGGGATGGGTGCGACACTTCTTGACGGGGCT-GTGGTTGAAAA 548
|||||||| |||||||| ||||||||||||||||||||||| |||| | || ||||||||
Sbjct 592 GAGGATGAGACCTTTATTGGGATGGGTGCGACACTTCTTGATGGGG-TCGTTGTTGAAAA 650
Query 549 GCATGGGATGGTTGCTGCTGGTGCGCTTGTACGACAAAATACCAGAATTCCTTCTGGAGA 608
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 651 GCATGGGATGGTTGCTGCTGGTGCACTTGTACGACAAAACACCAGAATTCCTTCTGGAGA 710
Query 609 GGTATGGGGAGGAAACCCAGCAAGGTTCCTTAGGAAGCTAACTGATGAGGAAATTGCTTT 668
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 711 GGTATGGGGAGGAAACCCAGCAAGGTTCCTCAGGAAGCTCACTGATGAGGAAATTGCTTT 770
Query 669 TATCTCTCAGTCAGCAACAAACTACTCAAACCTCGCACAGGCTCACGCTGCAGAGAATGC 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TATCTCTCAGTCAGCAACAAACTACTCAAACCTCGCACAGGCTCACGCTGCAGAGAATGC 830
Query 729 AAAGCCATTAAATGCGATTGAGTTCGAGAAGGTTCTACGCAAGAAGCATGCTCAAAAGGA 788
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 831 AAAGCCATTAAATGTGATTGAGTTCGAGAAGGTTCTACGCAAGAAGCATGCTCTAAAGGA 890
Query 789 TGAGGAGTATGACTCAATGCTCGGTATTGTGAGAGAAACTCCACCAGAGCTTAACCTCCC 848
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 891 CGAGGAGTATGACTCAATGCTCGGAATAGTGAGAGAAACTCCACCAGAGCTTAACCTCCC 950
Query 849 TAACAACATACAGCCTGATAAAGAAACCAAGCGTCCTTCTAATGTGAACTGA 900
||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TAACAACATACTGCCTGATAAAGAAACCAAGCGTCCTTCTAATGTGAACTGA 1002
Score = 180 bits (97), Expect = 2e-44
Identities = 109/115 (95%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 1 ATGGGAACCGTAGGAAGAGCATTTTACTCGGTTGGTTTTTGGATCCGTGAGACCGGTCAA 60
||||||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 175 ATGGGAACCCTAGGCAGAGCATTTTACTCGGTCGGTTTTTGGATCCGTGAGACTGGTCAA 234
Query 61 GCTCTCGATCGCCTTGGTTGTCGCCTTCAAGGCAAAAATTACTTCCGAGAACAAC 115
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GCTCTTGATCGCCTCGGTTGTCGCCTTCAAGGCAAAAATTACTTCCGAGAACAAC 289
> AT5G66510.2 | Symbols: GAMMA CA3 | gamma carbonic anhydrase 3
| chr5:26549704-26551604 REVERSE LENGTH=1230
Length=1230
Score = 209 bits (113), Expect = 3e-53
Identities = 352/465 (76%), Gaps = 26/465 (6%)
Strand=Plus/Plus
Query 330 AGGGGATG-TGAACACCGTAAGTGTTGG-GTCAGGCACTAATATTCAGGACAACTCACTT 387
||| |||| | |||| | | |||||||| | | || || ||||||||||||||| | |||
Sbjct 399 AGGAGATGCT-AACAGCATTAGTGTTGGAG-CTGGGACCAATATTCAGGACAACGCTCTT 456
Query 388 GTGCATGTGGC-AAAATCAAACTTAAGCGGGAAAGTGC--ACCCAACCATCATTGGAGAC 444
|| || || || || | | |||||||| ||||| || | | || || |||||||||||
Sbjct 457 GTCCACGTTGCTAAGA-CCAACTTAAGTGGGAAGGT-CTTA-CCTACTGTCATTGGAGAC 513
Query 445 AATGTAACCATTGGTCATAGTGCTGTTTTACATGGATGTACTGTCGAGGATGAAACCTTT 504
||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||| |
Sbjct 514 AATGTCACCATTGGTCATAGTGCTGTTTTACATGGCTGCACTGTCGAGGATGAGGCCTAT 573
Query 505 ATCGGGATGGGTGCGACACT-TCTTG-ACGGGGCTG-TGGTTGAAAAGCATGGGATGGTT 561
|| || | |||| | ||| ||||| | || ||| || ||||||| |||| ||||||
Sbjct 574 ATTGGTACAAGTGC-A-ACTGTCTTGGATGGAGCTCATG-TTGAAAAACATGCCATGGTT 630
Query 562 GCTGCTGGTGCGCTTGT-ACGACAAAATACCAGAATTCCTTCTGGAGAGGTATGGGGAGG 620
||| | || || ||||| | | || || || |||||||| ||||| ||||| ||||||||
Sbjct 631 GCTTCAGGAGCTCTTGTTAGG-CAGAACACTAGAATTCCCTCTGGCGAGGTTTGGGGAGG 689
Query 621 AAACCCAGC-AAGGTTCCTTAGGAAGCTAACTGATGAGGAAATTG-CTTTTATCTCTCAG 678
|||||||| || ||| | |||||| | || || || |||| | ||| | |||| |||
Sbjct 690 CAACCCAGCTAAATTTC-TGAGGAAGGTGACAGAAGAAGAAAGAGTCTTCT-TCTC-CAG 746
Query 679 T-CAGCAACAAACTACTCAAACCTCGCACAGGCTCACGCTGCAGAGAATGCAAAGC-CAT 736
| | || | ||||| ||| | || || |||||||| ||||||| |||||| | |
Sbjct 747 TTCGGCTGTGGAGTACTCCAACTTAGCTCAAGCTCACGCCACAGAGAACGCAAAGAAC-T 805
Query 737 TAAATGCGATTGAGTTCGAGAAGGTTCTACGCAAGAAGCATGCTC 781
| | | | ||||||| ||||| ||||| ||||||| | ||||
Sbjct 806 TGGACGAGGCTGAGTTCAAGAAGCTTCTAAACAAGAAGAACGCTC 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43954878625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5