BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312915
Length=2379
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19870.1 | Symbols: iqd32 | IQ-domain 32 | chr1:6895015-6898... 3746 0.0
> AT1G19870.1 | Symbols: iqd32 | IQ-domain 32 | chr1:6895015-6898725
REVERSE LENGTH=2956
Length=2956
Score = 3746 bits (2028), Expect = 0.0
Identities = 2272/2390 (95%), Gaps = 16/2390 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGATCTCCAGCTTCTTCTTGTCTCCGTCTCATCGCTTGCTCCGGCGGTGATGAT 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 187 ATGGGAAGATCTCCAGCTTCTTCTTGTCTCCGTCTCATCTCTTGCTCCGGCGGTGATGAT 246
Query 61 GCCT---CCGATCCTAACTCCACCGCCCTCGAGAACAAGAGCTCTGGTGATAAGCGTGGA 117
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 247 ACCTCCGCCGATCCTAACTCCACCGCCCTCGAGAACAAGAGCTCTGGGGATAAGCGTGGA 306
Query 118 TGGAGTTTCAGGAAGAAATCTGGGAAACAGCGAGGGTTGATTACTAGTGTAGTCTCTGAA 177
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 307 TGGAGTTTCAGGAAGAAATCTGGGAAACAGCGAGGGTTGATTACTAGTGTAGTTTCTGAA 366
Query 178 ACTACTCCTGCTTCTAGGACTAGAGAAACTCTTGAATCTGCTCTCCTTAAATCTCCGTCT 237
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 367 ACTACTCCTGCTTCTAGGACTAGAGAGACTCTTGAATCTGCTCTCCTTAAATCTCCGTCT 426
Query 238 CCTGACAATAACAATGTTTCTGAAAAGCAGCAGCAGTCATTCTCTGTTGATGAGAAGAAG 297
||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 427 CCTGATAATAACAATGTTTCTGAAAAACAGCAGCAGTCTTTCTCTGTTGATGAAAAGAAG 486
Query 298 AGTCAGTTACCTGTTGTTACCTATGTGGCTGAACCTGTGGATGAGaaaaaaaCACAGTCC 357
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 487 AGTCAGTTACCTGTTGTTACCTATGTGGCTGAGCCTGTGGATGAGAAAAAAACACAGTCT 546
Query 358 G---TTGAGGAGAAGACGGAGTTGTCGTCAGTGGAGGAACAGATTGACCACAGAACTGAG 414
| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 547 GTTATTGAGGAGAAGACGGAGTTGTTGTCAGTGGAGGAACAGATTGACCATAGAACTGAG 606
Query 415 GTGTCGCCTGTTATTGTGGAATCGAAAGGGACTGAGACTGAGGAAGATGATTTGATTGGA 474
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 607 GTGTCGCCTGTTATTGTGGAATCAAAAGGGACTGAAACTGAGGAAGATGATTTGATTGGA 666
Query 475 ACTGAATTGCAAGGACCAAATGCTGATGATGCAGCCAAGATAGAGAAAGATGTTACTTCC 534
||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||
Sbjct 667 ACTGAATTGCAAGGACCAAGTGCTGCTGATGCAGCCAAGATAGAGGAAGATGTTACTTCC 726
Query 535 GAGGTTGAAATTGCTAGTAAGGTTGAGCCGGAAGAATCTGAAACCGATGATGTGATTATT 594
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 727 GAGGTTGAAATGGCTAGTAAGGTTGAGCCGGAAGAATCTGAATCCGATGATGTGATTA-T 785
Query 595 A-TCAGTAAAGAAAGTGATGAAAATGTTGATGAGATGCTGGATGAGTCTGTTGTCGTGGT 653
| | || ||||||||||||||||| |||||||||| |||||||||||||||| |||| ||
Sbjct 786 AGTTAGAAAAGAAAGTGATGAAAAAGTTGATGAGAAGCTGGATGAGTCTGTTATCGTTGT 845
Query 654 CATCCAAGCTGCTATTCGTGGATTTTTGGTGCGAAGAGAACTTTTGAGGCGCAAGAAAGT 713
||||||||||||| ||||||| ||||||| ||||||||||||||| ||| ||||||||||
Sbjct 846 CATCCAAGCTGCTGTTCGTGGTTTTTTGGCGCGAAGAGAACTTTTAAGGAGCAAGAAAGT 905
Query 714 TATTAAACTTCAAGCTGCAGTTCGTGGCCACCTGGTTAGGAGCCAGGCCATGGGATCACT 773
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 906 TATTAAACTCCAAGCTGCAGTTCGTGGCCACCTGGTTAGGAGTCAGGCCATGGGATCACT 965
Query 774 GCGTTGTGTCCAAGCTATTGTCAAGATGCAGGCTATGGTTCGTGCTCGTCATTCCACAAA 833
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 966 GCGTTGTGTCCAAGCTATTGTCAAGATGCAGGCGATGGTTCGTGCTCGTCATTCCACAAA 1025
Query 834 AGATGGTAGCCGTGTTTCAGCAATCTCGGATAAGGCGGAAGGAAATGGAGCTGCACAAAA 893
||||||||||||||||||||||| |||||||||| ||||| ||||| ||||||||||||
Sbjct 1026 AGATGGTAGCCGTGTTTCAGCAACCTCGGATAAGTCGGAACCAAATGCAGCTGCACAAAA 1085
Query 894 ACTTCTAGAAAACAAGTTTGCTAAGCATCTAATGGAGTCAACTCCCAAGACAAAACCAAT 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1086 ACTTCTAGAAAACAAGTTTGCTAAGCATCTAATGGAGTCAACTCCCAAGACAAAACCTAT 1145
Query 954 CAGCATTAAATGTGATCCAACAAAACCTAGTTCTGCCTGGAACTGGTTGGAGAGGTGGAT 1013
|| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1146 CAACATTAAATGTGATCCTACAAAACCTAGTTCTGCTTGGAACTGGTTGGAGAGGTGGAT 1205
Query 1014 GTCTGTTCCAAAACCTGAGAAGACTTCAAAAGCAGAGTTGACAACTGAAGAGCAACAGTT 1073
||||||||||||||||||||||||||| |||||| | |||||||| ||||||||| | ||
Sbjct 1206 GTCTGTTCCAAAACCTGAGAAGACTTCTAAAGCAAATTTGACAACGGAAGAGCAAAATTT 1265
Query 1074 GGAAGAAACACAGAGTGTTAAAGTATCACCTCAAGTTGACTTTGTGAACTCTGACTCAAC 1133
|||||||||||||| ||||||| |||||||||||| |||||||||||| |||||||||||
Sbjct 1266 GGAAGAAACACAGAATGTTAAAATATCACCTCAAGCTGACTTTGTGAATTCTGACTCAAC 1325
Query 1134 GGTAGAGACCAAAACGGAAACTGATTTGTCAAGCTATGAAGCAAGTAAGCTAGCAGCTCA 1193
|||||||| |||||| ||||||||| || |||||||||||||||||||| ||| || |||
Sbjct 1326 GGTAGAGAACAAAACTGAAACTGATATGCCAAGCTATGAAGCAAGTAAGGTAGAAGGTCA 1385
Query 1194 GCATGTGGAGCTATCTGAAACAGAAAAAATGAGCCAATATGATTCACCAGAAGCATCAGC 1253
| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1386 GAATGTGGAGCTATCTGAGACAGAGAAAATGAGCCAATATGATTCACCAGAAGCATCAGC 1445
Query 1254 GGAGGTTTATTATGACTCAATCCAGTCTCAGCCACTTACTGCTAAGGAACCAGATTCTTT 1313
||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||
Sbjct 1446 GGAGGTTTATTATGACTCAATCCAGTCTCAGCCACTTGCTGCT-A--AACCAGATTCTTT 1502
Query 1314 GCTCGAAGAGCCTGAATATGTGGTTGGACAGCTTAAACATTCTTTGAAGCGTAAGGTTAG 1373
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1503 GCTCGAAGAGCCTGAATATGTGGATGGACAGATTAAACATTCTTTGAAGCGTAAGGTTAG 1562
Query 1374 CAACCCTTCTTTCATTGCTGCACAGTCGAAGTTTGAGGAACTAACTTCATCTACTGGTTC 1433
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 CAATCCTTCTTTCATTGCCGCACAGTCGAAGTTTGAGGAACTAACTTCATCTACTGGTTC 1622
Query 1434 AAACAAAGCAATGACGCTGTCTTCTAAAGATGGTGTTTCGGGTGAAGACGGCAAAACAGA 1493
|||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||
Sbjct 1623 AAACAAAGCAATGACGCTGTCTTCTAAAGATGATGTTTTGGGTGAAGAAGGCAAAACAGA 1682
Query 1494 TATAGGTTCA-C--ACACTACAAACACTAAAAAGGATCACTCTCTGGAAGATGTTACTCC 1550
||||| |||| | ||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1683 TATAGATTCACCAGACACTACAAACACTATAAAGGATCACTCTTTGGAAGATGTTACTCC 1742
Query 1551 AGCTGAGCTCAGTGGATCCGAGTGTGGCACCGAACTCTCTGTAACTTCTTCTCTTGACTC 1610
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1743 AGCTGAGCTTAGTGGATCCGAGTGTGGCACCGAACTCTCTGTAACTTCTTCTCTTGACAC 1802
Query 1611 ACTTGAGAAGAAGTCAGACGCTGAAGGTGCAGAGCCCAGGGTAGAAGCTAAGCTTTTAGA 1670
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1803 ACTTGAGAAGAAGTCAGACGCTGAGGGTGCAGAGCCCAGGGTAGAAGCTAAGCTTTTAGA 1862
Query 1671 GGATGACAGTTTTAAAACAGACCAAGCAGAGTTGATAGAAATTGATGTTAAAGACGCAAC 1730
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1863 GGATGACACTTTTAAAACAGACCAAGCAGAGTTGATAGAAATTGATGTTAAAGACGCAAC 1922
Query 1731 GTCATTGGGTATTGTAGAGGACCCTAAGGAGAAAGTTGAGAATGCTAAGGATGAAGTTGA 1790
|||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1923 GTCAATGGGTACTGTAGAGGACCCTAAGGAGAAAGTTGAGAATGCTAAGGACGAAGTTGA 1982
Query 1791 AATCTCAGTGACACAGCATGAATCGGTTGTTAGTACACCAGATTCCAAAAAGAGACGGGC 1850
||| |||| |||||| |||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1983 AATTTCAGCGACACATCATGAACCGGTCATTAGTACACCAGATTCCAAAAAGAGACGGGC 2042
Query 1851 TGAAGATGAATTAGGGCCTCAAGCTT-CCCCGTTATCTGAGGGAGCTTTAACTCCAATGA 1909
||||||||||| |||||||||||||| | || ||||||||||||||||||||||| ||||
Sbjct 2043 TGAAGATGAATCAGGGCCTCAAGCTTACGCC-TTATCTGAGGGAGCTTTAACTCCGATGA 2101
Query 1910 CAATTACTGAATCTCAGGCAACACCGGCAAGCCAAGCATCTTCTTCAGTCAAAGCAAGAA 1969
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2102 CAATCACTGAATCTCAGGCAACACCGGCAAGCCAAGCATCTTCTTCAGTGAAAGCAAGAA 2161
Query 1970 AAGGAAAATCCGAAAAGAGTGGTTCGAGCCAAAAGAGGAAAGTTAGCAAGAAAATAACAT 2029
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2162 AGGGAAAATCCGAAAAGAGTGGTTCAAGCCAAAAGAGGAAAGTTAGCAAGAAAATAACAT 2221
Query 2030 CAAGCCCGAAACAGGAAATTGGTAGTGGTGAGGCTACAGAACAAGAAGAAGGGAAAGAAC 2089
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 2222 CAAGCCCGAAACAGGAAATTGGTACCGGTGAGGCTACAGAACAAGAGGAAGGGAAAGAAC 2281
Query 2090 AGAAAAGCGTGAGAAGAAATTCTTTCGGGTATGATCAAGAAGCAAGAGAAAGCAGCGGAG 2149
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2282 AGAAAAGCGGGAGAAGAACTTCTTTCGGGTATGATCAAGAAGCAAGAGAAAGCAGCGGAG 2341
Query 2150 GCAAGAACTCTCTTCCTCGGTTCATGCAGCCAACACAGTCAGCGAAAGCCAAGGTTCAAG 2209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2342 GCAAGAACTCTCTTCCTCGGTTCATGCAGCCAACACAGTCAGCGAAAGCCAAGGTTCAAG 2401
Query 2210 AACATAACTCACCAAGATCAAGCCCTGATCTTCAAGAAAGAGATGTTGTTTCGGCCAAGA 2269
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2402 AACATAACTCACCAAGATCAAGCCCTGATCTTCAAGAAAGAGATGTTGTTTCGGCTAAGA 2461
Query 2270 AGAGACATTCTTTGCCTGGTGTTACCAATGGGAAACAAGTTTCTCCTAGAATCCAACGGT 2329
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2462 AGAGACATTCGTTGCCTGGTGTTACCAATGGGAAACAAGTTTCTCCTAGAATCCAACGGT 2521
Query 2330 CTGCGTCTCAAGCACAACAGGGAACAAAGGACAGAAAATGGCAGAGGTGA 2379
||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2522 CTGCGTCTCAAGCACAACAGGGAACAAAGGATAGAAAATGGCAGAGGTGA 2571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118121882385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5