BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312922
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19950.1 | Symbols: HVA22H | HVA22-like protein H (ATHVA22H)... 1365 0.0
> AT1G19950.1 | Symbols: HVA22H | HVA22-like protein H (ATHVA22H)
| chr1:6924184-6926724 FORWARD LENGTH=1353
Length=1353
Score = 1365 bits (739), Expect = 0.0
Identities = 883/949 (93%), Gaps = 24/949 (3%)
Strand=Plus/Plus
Query 1 ATGATTGGATCGTTTCTAACAAGAGGACTTGTAATGGTATTTGGATATGCGTATCCTGCG 60
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 209 ATGATTGGATCGTTTCTAACAAGAGGACTAGTAATGGTATTTGGATATGCGTATCCTGCT 268
Query 61 TATGAATGCTACAAAGCTGTTGAAAAGAATAAGCCTGAGATGCAACAGCTTCGATTCTGG 120
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 TATGAATGTTACAAAGCGGTTGAAAAGAATAAGCCTGAGATGCAACAGCTTCGATTCTGG 328
Query 121 TGCCAATACTGGATTTTGGTGGCTGCTTTGACGATTTTCGAAAGAGTTGGCGATGCTTTT 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 329 TGCCAATACTGGATTTTGGTGGCTGCTTTGACAATTTTCGAAAGAGTTGGCGATGCTCTT 388
Query 181 GCTTCATGGGTTCCACTATACTGTGAGGCAAAACTGGCATTTTTCATATATCTTTGGTTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 GCTTCATGGGTTCCACTATACTGTGAGGCAAAACTGGCATTTTTCATATATCTTTGGTTC 448
Query 241 CCCAAGACCAGAGGAACTACATATGTGTACGATTC-tttttttAGACCATATGTTGCAAA 299
||||||||||||||||||||||| ||||||||||| || ||| || ||||||||||||||
Sbjct 449 CCCAAGACCAGAGGAACTACATACGTGTACGATTCATTCTTTCAG-CCATATGTTGCAAA 507
Query 300 GCATGAAAATGAAATCGACCGCAACTTGATTGAGCTAAGGACCAAAGCTGGAGATATGGC 359
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||
Sbjct 508 GCATGAAAATGAAATCGACCGCAGCTTGATTGAGCTAAGGACCAAAGCTGGGGATCTGGC 567
Query 360 AGTCG-TATACTGCAGAAAAGCAGTTAGCTATGGACAAACAAGAATCGCAGAGATCCTGC 418
||| | ||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 568 AGT-GATATACTGCAGAAAAGCAGTGAGCTATGGACAAACAAGAATCGTAGAGATCCTGC 626
Query 419 ATTTTGTAGCTCTCCAGTCAACACCAAAACCTCAGCCGAAGGTAAAGAAGCA-G--GCAG 475
|||||||||||||||||||||||||||||||| |||| |||| ||||||||| | ||||
Sbjct 627 ATTTTGTAGCTCTCCAGTCAACACCAAAACCTAAGCCTAAGGAAAAGAAGCAGGCAGCAG 686
Query 476 CACCAGAAGAGGAGGAACAGAAACAACCGGATCTTAAGGCGACGAGCCAAGCAGCTTCTT 535
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 CACCAGAAGAGGAAGAACAGAAACAACCGGATCTTAAGGCGACGAGCCAAGCAGCTTCTT 746
Query 536 CTAATCCTCAAGCACGTATGCAATCGAAGAAACCACAGCTTGTAACCAAAGAACCTATAT 595
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 CTAATCCTCAAGTGCGTCTGCAATCGAAGAAACCACAGCTTGTAACCAAAGAACCTATAT 806
Query 596 CACCAAAGCCTCTTTCATCCCCACGTAAGCAACAACAACTACAAACAGAGACCAAAGAAG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 807 CACCAAAGCCTCTTTCATCCCCACGTAAGCAACAACAACTACAAACAGAGACCAAGGAAG 866
Query 656 CAAAAGCAAGCGTGTCACAAACCAGACTCACTACTCTCTCTccaccagtaccaccaccac 715
|||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||
Sbjct 867 CAAAAGCAAGCGTGTCACAAACCAAACTCACTACTCTAACTCCACCAGGACCACCACCAC 926
Query 716 caccatcacc-CT-CAAC-A--GCC-AT----G-----AAACCAAACGCTGATCCAGCAC 760
||||| |||| | | || | ||| | | |||| |||||||||||||||||
Sbjct 927 CACCACCACCACCGCCACCATCGCCCACAACCGCCGCGAAACGAAACGCTGATCCAGCAC 986
Query 761 AGCCATTACCAACAGAGGCAGA-GCAAGCGTCACAGACTGTTGCAGCGTTACCACCAGCA 819
|||||| ||||||||||||||| | |||||||||||||||| ||||| |||||| | ||
Sbjct 987 AGCCATCACCAACAGAGGCAGAAG-AAGCGTCACAGACTGTCGCAGCTTTACCAGAACCA 1045
Query 820 GCGTCTGAGATTCAGCGAGCGACATCTTCGAAAGAGACTTTAATGGAGGAAACACTTAGG 879
||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| |||
Sbjct 1046 GCGTCTGAGATTCAGCGAGCGTCATCGTCGAAAGAGACTATAATGGAGGAAACACTAAGG 1105
Query 880 GTCACTCGTGGGAGTCTGAGAAAAGCTCGTTCTGCGGGAGCACCGCGCT 928
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 ATCACTCGTGGGAGTCTGAGAAAAGCTCGTTCTGCGGGAGCACCGCGCT 1154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5