BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312925
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19970.1 | Symbols: | ER lumen protein retaining receptor f... 1303 0.0
AT1G75760.1 | Symbols: | ER lumen protein retaining receptor f... 702 0.0
> AT1G19970.1 | Symbols: | ER lumen protein retaining receptor
family protein | chr1:6931012-6932689 REVERSE LENGTH=1093
Length=1093
Score = 1303 bits (705), Expect = 0.0
Identities = 814/864 (94%), Gaps = 18/864 (2%)
Strand=Plus/Plus
Query 1 ATGAAGGCGGAGAAGAGTCCGATTCAGTCCGTGATGGCGTGGATTCGCCGGCAACCGCCA 60
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 93 ATGAAGGCGGAGAAGAATCCGATTCAGTCCGTAATGGCGTGGATTCGCCGGCAACCGCCA 152
Query 61 AAGGTAAAGGCTTTTCTTGGTGTGGTAACGGCAATGACGGTGCTTGTTTTCCTCAGGGTA 120
|| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 153 AAAGTAAAGGCTTTTCTTGGCGTGGTAACGGCAATGACGGTGCTTGTTCTCCTCAGGGTG 212
Query 121 ATTGTTCATGAACACGACAACCTTTTCATTGCCTCTGAGGCTGTTCATGCCTTTGGAATC 180
|||||||||||||||||||| |||||| | || ||||||||||| |||||| |||| |||
Sbjct 213 ATTGTTCATGAACACGACAATCTTTTCGTCGCTTCTGAGGCTGTACATGCCGTTGGTATC 272
Query 181 GCTGTTCTTATCTACAAGCTCACAAAGGAGAAGACTTGCGCTGGGATATCTCTCAAGACA 240
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 273 GCTGTTCTTATCTATAAGCTCACAAAGGAGAAGACTTGTGCTGGGATATCTCTCAAGACA 332
Query 241 CAGGAGCTAACGGCTTTGTTTCTGGCTGTGAGATTGTATTGTAGCTTTGTAATGGAGTTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 CAGGAGCTAACGGCTTTGTTTCTGGCTGTGAGATTGTATTGTAGCTTTGTAATGGAGTTT 392
Query 301 GATCTTCATACATTACTTGATTCAGCTACTTTGGTGACCACTCTTTGGGTCATTTATATG 360
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 393 GATCTTCATACATTTCTTGATTCAGCTACTTTGGTGACCACTCTTTGGGTCGTTTATATG 452
Query 361 ATTCGTTTCAAGCTTAGGCCTACTTATATGGAAGACAAAGACAATTTTGCTATCTACTTC 420
|| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 453 ATCCGTTTCAAGCTTAGACCTACTTATATGGAAGATAAAGACAATTTTGCTATCTATTTC 512
Query 421 GTCGTAATCCCATGTGCTGTTCTGTCTTTCTTCATTCATCCATCAACACGACACCACATC 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 513 GTCGTAATCCCATGTGCTGTTCTGTCTTTCTTCATTCATCCATCAACACGTCACCACATC 572
Query 481 ATAAACAGGATTTCTTGGGCATTCTGTGTTTATCTTGAAGCTGTTTCAGTTCTTCCTCAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 ATAAACAGGATTTCTTGGGCATTCTGTGTTTATCTTGAAGCTGTTTCAGTTCTTCCTCAA 632
Query 541 TTAAGAGTCATGCAGAACACTAAGATCGTGGAACCATTCACAGCTCATTACGTATTTGCT 600
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 633 TTAAGAGTCATGCAGAACACTAAGATTGTGGAACCATTCACTGCACATTACGTATTTGCT 692
Query 601 TTGGGAATCGCTAGGTTCTTGAGTTGTGCACACTGGATCCTTCAGGTGTTGGATACGCGA 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 TTGGGAATTGCTAGGTTCTTGAGTTGTGCACACTGGATCCTTCAGGTGTTGGATACGCGA 752
Query 661 GGGCGGTTACTGACTGCATTAGGTTCTGGACTGTGGCCTGTAATGGTCCTCATCTCTGAA 720
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 753 GGGCGGTTACTGACTGCATTAGGGTCTGGACTGTGGCCTGTAATGGTCCTCATCTCTGAA 812
Query 721 ATCGTCCAAACCTTCATTCTTGCAGATTTCTGCTATTACTATGTTCAGAG---------- 770
|| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 ATAGTCCAAACCTTCATTCTTGCAGATTTCTGCTATTACTATGTTCAGAGTTTAATGGGT 872
Query 771 ---C---TCGTTCTTCGTCTCCCGTCTGGTGTGGTGTAAGAAGCTTTGTGAAAATGGAGT 824
| |||||||||| ||||||||||||||||||||| ||||| || |||||||||||
Sbjct 873 GGACAGCTCGTTCTTCGACTCCCGTCTGGTGTGGTGTAAAAAGCTCTGCGAAAATGGAGT 932
Query 825 GCTTGAGCTTGTGGAG-G-TTTAA 846
|||||||||||||||| | |||||
Sbjct 933 GCTTGAGCTTGTGGAGAGGTTTAA 956
> AT1G75760.1 | Symbols: | ER lumen protein retaining receptor
family protein | chr1:28446632-28448646 REVERSE LENGTH=1352
Length=1352
Score = 702 bits (380), Expect = 0.0
Identities = 646/774 (83%), Gaps = 20/774 (3%)
Strand=Plus/Plus
Query 1 ATGAAGGCGGAGAA-GAGTCCGATTCA-GTCCGTGATGGCGTGGATTCGCCGGCAACCGC 58
|||||||||| || || ||||| || | |||||| | | ||| |||| |||||||| |
Sbjct 226 ATGAAGGCGG-CAACAAGGCCGATCCACG-CCGTGACGACATGGGTTCGTCGGCAACCAC 283
Query 59 CAAAGG-TAAAGGCTTTTCTTGGTGTGGTAACGGCAATGACGGTGCTTGTTTTCCTCAGG 117
|||||| |||||| |||||| ||||| || | || ||||| | || ||||| | ||
Sbjct 284 CAAAGGTTAAAGG-TTTTCTCGGTGTTGTCTCCGCCATGACTGCCCTCGTTTTGTTGAGA 342
Query 118 GTAATTGTTCATGAACACGACAACCTTTTCATTGCCT-CTGAGGCTGTTCATGCCTTTGG 176
|| ||||||||||| |||||||| ||||| | | || |||| ||||||||| || ||||
Sbjct 343 GTGATTGTTCATGACCACGACAATCTTTTTGTCG-CTGCTGAAGCTGTTCATTCCCTTGG 401
Query 177 AATCGCTGTTCTTATCTACAAGCTCACAAAGGAGAAGACTTGCGCTGGGA-TATCTCTCA 235
|||| | || |||||||| || ||||| ||||||| |||||| ||| ||| |||||||||
Sbjct 402 AATCTCCGTCCTTATCTATAAACTCACCAAGGAGAGGACTTGTGCT-GGATTATCTCTCA 460
Query 236 AGACACAGGAGCTAACGGCTTTGTTTCTGGCTGTGAGATTGTATTGTAGCTTTGTAATGG 295
|| |||| |||||||| ||| ||||| |||| |||||| |||||||||| ||||| ||||
Sbjct 461 AGTCACAAGAGCTAACAGCTCTGTTTTTGGCGGTGAGACTGTATTGTAGTTTTGTGATGG 520
Query 296 AGTTTGATCTTCATACATTACTTGATTCAGCTACTTTGGTGACCACTCTTTGGGTCATTT 355
|||||||| |||| || |||||||| || ||||| |||||||| || |||| || || |
Sbjct 521 AGTTTGATATTCACACGTTACTTGACTCGGCTACATTGGTGACTACACTTTTTGTTATCT 580
Query 356 ATATGATTCGTTTCAAGCT-TAGGCCTACTTATATGGAAGACAAAGACAATTTTGCTATC 414
||||||| ||||| ||||| | | ||| ||||||||| |||||||||||||||||||||
Sbjct 581 ATATGATCCGTTTTAAGCTCAAAG-CTAGTTATATGGACGACAAAGACAATTTTGCTATC 639
Query 415 TACTTCGTCGTAATCCCATGTGCTGTTCTGTC-TTTCTTCATTCATCCATCAACACGA-C 472
|||| |||||| || ||||||| |||||| || | | ||||||| |||||||||| | |
Sbjct 640 TACTACGTCGTTATTCCATGTGTTGTTCTATCAGTAC-TCATTCACCCATCAACAC-ATC 697
Query 473 ACCACATCATAAACAGGATTTCTTGGGCATTCTGTGTTTATCTTGAAGCTGTTTCAGTTC 532
| || || || || | |||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 698 ATCATATAATCAATAAGATTTCTTGGGCCTTCTGTGTTTACCTTGAAGCTGTTTCAGTCC 757
Query 533 TTCCTCAA-TTAAGAGTCATGCAGAACACTAAGATCGTGGAACCATTCACAGCTCATTAC 591
|||||||| || ||||||||||| ||||||||||||||||| ||||| ||||| ||||||
Sbjct 758 TTCCTCAACTT-AGAGTCATGCAAAACACTAAGATCGTGGAGCCATTTACAGCACATTAC 816
Query 592 GTATTTGCTTTGGGAATCGCTAGGTTCTTGAGTTGTGCACACTGGATCCTTCAGGTGTTG 651
||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 817 GTATTCGCTTTGGGGATCGCTAGGTTCTTGAGTTGTGCACACTGGGTCCTTCAGGTTTTG 876
Query 652 GATACGCGAGGGCGGTTACTGACTGCATTAGGTTCTGGACTGTGGCCTGTAATGGTCCT- 710
|| || |||||||||||| ||||||| ||||| | ||| | |||||| ||||||| ||
Sbjct 877 GACACTCGAGGGCGGTTATTGACTGCTTTAGGATATGGTTTCTGGCCTATAATGGTTCTT 936
Query 711 CATCTCTGAAATCGTCCAAACCTTCATTCTTGCAGATTTCTGCTATTACTATGT 764
| |||||||||||||||||||||||||||| || || |||||||| ||||||||
Sbjct 937 C-TCTCTGAAATCGTCCAAACCTTCATTCTAGCCGACTTCTGCTACTACTATGT 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5