BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312926
Length=1971
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19980.1 | Symbols: | cytomatrix protein-related | chr1:693... 1528 0.0
AT1G19990.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1164 0.0
> AT1G19980.1 | Symbols: | cytomatrix protein-related | chr1:6933016-6935002
FORWARD LENGTH=1534
Length=1534
Score = 1528 bits (827), Expect = 0.0
Identities = 947/1005 (94%), Gaps = 7/1005 (1%)
Strand=Plus/Plus
Query 1 ATGGGTGTGAAATTGGTGTCTGGAGATTCTTCGGAACGAGAAAACTGGCAAACAATTTTC 60
|||| |||||||| ||| ||||||||||| |||||||| ||||||||| |||| ||||||
Sbjct 147 ATGGTTGTGAAATCGGTTTCTGGAGATTCGTCGGAACGGGAAAACTGGGAAACGATTTTC 206
Query 61 AAGAGTTTGGTCAAGATTCTACAGACGAAACAGGATCAGCTCGAGTCGCTTCTCAAAGAC 120
|||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||
Sbjct 207 AAGAGTTTGGTCAAGATTTTACAGACGAAACAGGACCAGCTTGAGTCGCTTCTCAAAGAC 266
Query 121 AGGAAGATTCTTGAAAGTGAGATCAAGACTAAGCACGAAAATTGGCTCTCTGATGTTCGA 180
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 267 AAGAAGATTCTTGAAAGTGAGATCAAGACTAATAACGAAAATTGGCTCTCTGATGTTCGA 326
Query 181 AATTACGAGGATCAACTCTCTCTGATGATGAAAGAAATTGAAACGACTAAGATGATTCAG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 327 AATTACGAGGATCAACTCTCTCTGATGATGAAAGAAATTGAAACGACTAAGATGTTTCAG 386
Query 241 TTGCTTGAGACCTCCAAATGCAATCTCTTGTGTGGCTTAAAGGAGAAAGATCATTCTCTT 300
|| || ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 387 TTACTGGAGACCTATAAAAGCAATCTCTTGTGTGGCTTAAAGGAGAAAGATCGTTCTCTT 446
Query 301 TGCAATTTGAAATTAGAACATGCGGTGGACGAGTTAAGTGACTTCAAGGCTTGGTTTGAT 360
|||||||||||| |||| ||| || |||| ||||||| |||||||||||||||||||||
Sbjct 447 TGCAATTTGAAACTAGAGCATTCGCTGGATGAGTTAAAAGACTTCAAGGCTTGGTTTGAT 506
Query 361 TTCCTCACTCTGAATACAAATATGGAGAATGAAAGTGGCAACTCAGAAGCTTCGGCTATT 420
||||||||||||||||||||| |||||| || ||||||||| ||||||| | ||||||||
Sbjct 507 TTCCTCACTCTGAATACAAATGTGGAGAGTGTAAGTGGCAATTCAGAAGGTACGGCTATT 566
Query 421 AAGTCATTGGAAGCAAAAATCAGAAAACTGAAACTTGAGTATGAGAAGCTTGCTTCTGAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 AAGTCATTGGAAGCAAAAATCAGAAAACTGAAACTTGAGTATGAGAAGCTTGCTTCTGAA 626
Query 481 AAGAAATGTGAGGTATCTGATCTTTTACGAGAAAACGGGTTTGCGTGGAATCAGTTCAAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 AAGAAATGTGAGGTATCTGATCTTTTACGAGAAAACGGGTTTGCGTGGAATCAGTTCAAA 686
Query 541 TGTATCGAGAGTGGATTCACTGATAAGTTAAAGAGGAAAGATGATGAGATCGCTCAAGCG 600
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 687 TGTATCGAGAGTGAATTCACTGATAAGTTAAAGAGGAAAGATGATGAGATCGTTCAAGCG 746
Query 601 AATACGAAAATCTCAAGTCTTATATCTTATCAAGAGCAGCTTCAGTCATCTAATCAAGAG 660
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 AATACGAAAATTTCCAGTCTTATATCTTATCAAGAGCAGCTTCAGTCATCTAATCAAGAG 806
Query 661 AAGGATGAGACTATCTCAAGGTTAAAGGCTAAGATGGCTGAAATGGAGGTGAATTCTACT 720
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 807 AAGGATGAGACTATCTCAAGGTTAAAGGCTAAGATGGCTGAAATGGAGACCAATTCTACT 866
Query 721 AAGAAAGATGAGGAAATCTCAAAACTCACACGGGATCTAGAGTCTGCAAAGAAGTCTCGT 780
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 867 AAGAAAGATGAGGAAATCTCAAAACTCACAAGGGATCTAGAGTCTGCAAAGAAGTCTCGT 926
Query 781 GGGCTT-ACACCGGTTTTAACTCGATGCACCAAACTTGAAACGCGTAGCAATGGAAATAC 839
||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 927 GGG-TTCACACCGGTTTTAACTCGATGCACCAAACTTGAAAAGCGTAGCAATGGAAATAC 985
Query 840 GGTGGGATCTCATATATTTACTAAGAAAGAGAAGGT-TGCTGCATCAACAACAAACGAAA 898
||||||||||||||||| |||||||||||| ||| | |||||||||||||||||| ||||
Sbjct 986 GGTGGGATCTCATATATCTACTAAGAAAGACAAG-TCTGCTGCATCAACAACAAATGAAA 1044
Query 899 AGGTAAGCAAAAGCTCAAAGAGGAAAAGAGTGAA---CATGACACCGGCCTCAGTTTCAG 955
|||||||||||||||||||||||||||||| ||| ||||||||||| ||| |||||||
Sbjct 1045 AGGTAAGCAAAAGCTCAAAGAGGAAAAGAGCGAAGAACATGACACCGGTCTCGGTTTCAG 1104
Query 956 AAGTCCCAAAGCTGTTCACTTCAACTTTTAGACTTCCCAAGTTGA 1000
||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 1105 AAGTCCCAAAGCTCTTCACTTCGACTTTTAGGCTTCCCAAGTTGA 1149
> AT1G19990.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured
cell; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT5G11600.1); Has 11256 Blast hits to 7192
proteins in 541 species: Archae - 6; Bacteria - 629; Metazoa
- 4714; Fungi - 936; Plants - 545; Viruses - 34; Other Eukaryotes
- 4392 (source: NCBI BLink). | chr1:6935218-6936693
FORWARD LENGTH=893
Length=893
Score = 1164 bits (630), Expect = 0.0
Identities = 728/774 (94%), Gaps = 12/774 (2%)
Strand=Plus/Plus
Query 1198 AAGAAGATGCCACCATCGGAGGATGCGAAAGCTATGAAGAAGAAAGAGGAGGCTGAGGAA 1257
|||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 104 AAGAAGATGCCACCTTCGGAGGATGTGAAAGCTATGAAGATGAAAGAGGAGGCTGAGGAA 163
Query 1258 GACAATAAGAGTTTGAGTTCCATTGTGAAGAAGAAGCCCACGAACGCTAACAATGCTGGT 1317
||||||||||| ||||||||| ||| ||||||||| |||||||||| |||||||||||||
Sbjct 164 GACAATAAGAGCTTGAGTTCCTTTGCGAAGAAGAAACCCACGAACGGTAACAATGCTGGT 223
Query 1318 TCGAAGAAATTGAAGAAAGAAGAGAACGACGATGATGATGATGAGGATGATAACAAACCC 1377
|||||||||||||||||||||||| | ||||||| |||||| ||||||||||||||
Sbjct 224 TCGAAGAAATTGAAGAAAGAAGAG-A--ACGATGACGATGAT---GATGATAACAAACCT 277
Query 1378 ATCAAGTCATCTGTATCTGGGTCTCGAGCTAAGCCAGTGAAGAAGAAGGAAGAGATTGAT 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 ATCAAGTCATCTGTATCTGGGTCTCGAGCTAAGCCAGTGAAGAAGAAGGAAGAGATTGAT 337
Query 1438 AAAGACGATGGGAAGAAGCCTGTTGCTAAGAGGAATTCTTCTGTTGGAGCCTCAAATgag 1497
|||||||||| ||||||||||||| |||||||||||||||||||||| | |||||| |||
Sbjct 338 AAAGACGATGAGAAGAAGCCTGTTTCTAAGAGGAATTCTTCTGTTGGTGTCTCAAAGGAG 397
Query 1498 aagaagaaaacagagaaagaagaacaagtaaagaaaacgagagaaagaaaagTATATGAT 1557
|| |||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 398 AATAAGAAACCAGAGAAAGAAGAAGAAGTAAAGAAAAAGAGAGAAAGAAAAGTATATGAT 457
Query 1558 TTGCCTGGTCAGAAGAGAGACCAGCCTGAGGAGAGAGATCCACTTAGGATTTTCTATGAG 1617
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 458 TTGCCTGGTCAGAAGAGAGAGCAGCCTGATGAGAGAGATCCACTTAGGATTTTCTACGAG 517
Query 1618 TCACTTTACAAGCAAATTCCCACTAGCGACATGGCTCAGATTTGGTTGATGGAGTCTGGA 1677
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 TCACTTTACAAACAAATTCCCACTAGCGACATGGCTCAGATTTGGTTGATGGAGTCTGGA 577
Query 1678 TTGCTTCCAGCTGAAAAAGCAAAGAAAGTTCTTGAGAAGAAACAGCAAAAGGGTGGAAAG 1737
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 578 TTGCTTCCAGCCGAAAAAGCAAAGAAAGTTCTTGAGAAGAAACTGCAAAAGGGTGGAAAA 637
Query 1738 TTCAGTTCTCCAGTAAAATCTGCAGCTTCTACTCCAAGAAGCAACACCAAATCAGTGACC 1797
|| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 638 TTAAGTTCTCCAGTAAAATCTGCTGCTTCTACTCCAAGAAGCAACTCCAAATCAGTGACC 697
Query 1798 GTGAAGAAGAAGGAAGCAAAAAAGTCACCATCTGAAGCTTTGTCAAACAAAAAGAAGGGA 1857
|||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||
Sbjct 698 GTGAAGAAGAAGGAAGTACAAAAGTCGCCATCTGAAGCTTTGTCAAACAAAAAGAAGGGA 757
Query 1858 AATGATACGAAACCAACCACGAAGAAGAGGAAGAAGAACTCtgatgatgatgatgatgac 1917
|||||| ||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 758 AATGATTCGAAACCAACCACGAAGAAGAGGAAGAAGAACTCTGATGATGACGA------C 811
Query 1918 tcagatgatgatTTTTTGGCTAGCAGAGTCTCTAAAAAGGCTAGAGCCAAGTAG 1971
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 TCAGATGATGATTTTTTGGCTAGCAGAGTCTCTAAAAAGGCTAGAGCCAAGTAG 865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97640060025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5