BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312936
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20080.1 | Symbols: SYTB, ATSYTB, NTMC2TYPE1.2, NTMC2T1.2, S... 2671 0.0
> AT1G20080.1 | Symbols: SYTB, ATSYTB, NTMC2TYPE1.2, NTMC2T1.2,
SYT2 | Calcium-dependent lipid-binding (CaLB domain) family
protein | chr1:6962132-6965045 FORWARD LENGTH=1851
Length=1851
Score = 2671 bits (1446), Expect = 0.0
Identities = 1560/1615 (97%), Gaps = 8/1615 (0%)
Strand=Plus/Plus
Query 1 ATGGGAATAATCAGCACAATATTGGGTGTGATTGGTTTTGGATTTGGAACAACGATCGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 ATGGGAATAATCAGCACAATATTGGGTGTGATTGGTTTTGGATTTGGAACAACGATCGGA 164
Query 61 ATCGTCATTGGTTACTACTTGTTCATCTATTTCCAGTCTACTGA---T---GATCCTGAG 114
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 165 ATCGTCATTGGTTACTACTTGTTCATCTATTTCCAGTCTACTGATGTTGAGGATCCTGAG 224
Query 115 ATCAAGCCACTGGTGGAGTTAGATTCAGAGACTATAGCAAAAATGTTCCCTGAAATACCT 174
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 225 ATCAAGCCATTGGTGGAGTTAGATTCAGAGACTATAGCAACAATGTTCCCTGAAATACCT 284
Query 175 TTGTGGGTGAAAAATCCTGATTTTGATCGTATTGACTGGCTTAACAAGCTCATTGGCCAT 234
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 285 ATGTGGGTGAAAAATCCTGATTTTGATCGTATTGACTGGCTTAACAAGCTTATTGGCCAT 344
Query 235 ATGTGGCCTTACT-TGGACAAAGCTATTTGTAAGATGGCCAAGTCAATTGCCAAACCTAT 293
||||||||||| | ||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 345 ATGTGGCCTTA-TATGGACAAAGCTATCTGTAAGATGGCCAAGTCAATAGCCAAACCCAT 403
Query 294 TATCGCTGAGCAAATTCCAAACTACAAAATCGATTCAGTTGAATTTGAAATGCTCACTTT 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 TATCGCTGAGCAAATTCCAAACTACAAAATCGATTCAGTTGAATTTGAAATGCTCACTTT 463
Query 354 GGGTTCATTACCACCAAGTTTCCAAGGAATGAAAGTTTATGCAACTGATGACAAAGAAAT 413
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 464 GGGTTCATTACCACCAAGTTTCCAAGGAATGAAAGTATATGCAACTGATGACAAAGAAAT 523
Query 414 AATAATGGAGTTGTCAGTGAAATGGGCAGGGAACCCTAATATCATTGTTGTAGCCAAAGC 473
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 TATCATGGAGTTGTCAGTGAAATGGGCAGGGAACCCTAATATCATTGTTGTAGCCAAAGC 583
Query 474 ATTTGGGTTAAAAGCTACCGTTCAAGTGGTTGATTTGCAAGTTTACGCAACTCCAAGGAT 533
|||||||||||||||||| ||||| ||| ||||||||||||||||||| |||||||||||
Sbjct 584 ATTTGGGTTAAAAGCTACTGTTCAGGTGATTGATTTGCAAGTTTACGCTACTCCAAGGAT 643
Query 534 TACTCTGAAGCCTTTGGTCCCATCTTTCCCCTGTTTTGCCAACATATTTGTCTCTCTTAT 593
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 644 TACTCTGAAGCCTTTGGTTCCATCATTCCCCTGTTTTGCCAACATATTTGTCTCTCTTAT 703
Query 594 GGATAAGCCACAAGTCGATTTTGGACTGAAGTTGCTTGGTGCAGATGTAATGGCGATTCC 653
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 704 GGATAAGCCACAAGTCGATTTTGGACTGAAGTTACTAGGTGCAGATGTAATGGCGATTCC 763
Query 654 TGGCTTATACCGATTTGTCCAGGAGCTCATTAAAGATCAGGTTGCAAATATGTACCTATG 713
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 764 TGGCTTATACCGATTTGTCCAGGAAATCATTAAAGATCAGGTTGCAAACATGTACCTATG 823
Query 714 GCCAAAGACTTTGAATGTTCAGATAATGGATCCTTCTAAAGCTATGAAGAAACCTGTTGG 773
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 824 GCCAAAGACTTTGAATGTTCAAATAATGGATCCTTCTAAAGCTATGAAGAAACCTGTTGG 883
Query 774 ATTGCTTAGTGTGAAGGTCATAAAGGCAATAAAGCTTAAGAAGAAAGATCTTCTGGGTGG 833
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 884 ATTGCTTAGTGTGAAGGTCATAAAGGCAATAAAGCTTAAGAAGAAGGATCTTCTGGGTGG 943
Query 834 ATCAGATCCTTATGTGAAATTAACACTCTCTGGAGACAAGGTTCCTGGTAAAAAGACAGT 893
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 944 ATCAGATCCTTATGTGAAATTAACACTCTCTGGAGACAAGGTTCCTGGTAAGAAGACAGT 1003
Query 894 TGTTAAACACAGTAATCTGAATCCTGAATGGAACGAAGAATTCGATTTGGTTGTTAAAGA 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 TGTTAAACACAGTAATCTGAATCCTGAATGGAACGAAGAATTCGATTTGGTTGTTAAAGA 1063
Query 954 ACCAGAGAGCCAAGAACTACAGCTCATTGTTTATGACTGGGAACAGGTTGGTAAACATGA 1013
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 ACCAGAGAGCCAAGAGCTACAGCTCATTGTTTATGACTGGGAACAGGTTGGTAAACATGA 1123
Query 1014 TAAGATAGGAATGAATGTGATTCAACTCAAAGACCTTACACCAGAGGAGCCAAAACTCAT 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 TAAGATAGGAATGAATGTGATTCAACTCAAAGACCTTACACCAGAGGAGCCAAAACTCAT 1183
Query 1074 GACACTTGAGCTCTTAAAATCCATGGAACCAAACGAGCCAGTTAGTGAGAAATCGCGTGG 1133
|||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1184 GACACTCGAGCTCTTAAAATCCATGGAACCAAAAGAGCCAGTTAGCGAGAAATCGCGTGG 1243
Query 1134 ACAGCTCGTTGTGGAGGTCGAATATAAACCTTTTAAGGATGATGAAATTCCAGAGAACCT 1193
||||||||| || || ||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1244 ACAGCTCGTGGTTGAAGTCGAATATAAACCTTTTAAGGATGATGATATTCCAGAGAACAT 1303
Query 1194 TGATGATCCAAATGCAGTAGAGAAAGCACCAGAAGGCACACCTTCTAGTGGTGGTTTGCT 1253
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1304 TGATGATCCAAATGCAGTAGAGAAAGCACCAGAAGGCACACCTTCTACTGGTGGCTTGCT 1363
Query 1254 TGTGGTGATAGTTCACGAAGCTGAAGATCTAGAAGGCAAATATCACACTAATCCTTCTGT 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 TGTGGTGATAGTTCACGAAGCTGAAGATCTAGAAGGCAAATATCACACTAATCCTTCTGT 1423
Query 1314 TCGTTTGCTATTCAGAGGGGAAGAGCGTAAAACAAAGCGTGTGAAGAAAAACAGAGAACC 1373
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1424 TCGTTTGCTATTCAGAGGAGAAGAGCGTAAGACAAAGCGTGTGAAGAAAAACAGAGAACC 1483
Query 1374 GAGATGGGATGAAGATTTTCAGTTCCCAGTAGATGAGCCTCCCATAAACGATAAGCTTCA 1433
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1484 GAGATGGGATGAAGATTTTCAGTTCCCATTAGATGAGCCTCCCATAAACGATAAGCTACA 1543
Query 1434 CGTTGAAGTCATAAGTTCTTCTTCAAGATTACTTCATCCCAAGGAAACTCTTGGTTACGT 1493
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1544 CGTTGAAGTCATAAGTTCTTCTTCAAGACTAATTCATCCCAAGGAAACTCTTGGTTACGT 1603
Query 1494 TGTGATAAACCTTGGTGATGTTGTGAGTAATCGGAGAATCAATGATAAGTATCATCTGAT 1553
|||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1604 GGTGATAAATCTTGGGGATGTTGTGAGTAATCGGAGAATCAACGATAAGTATCATCTGAT 1663
Query 1554 TGATTCCAAGAATGGTCGGATTCAGATTGAGCTTCAGTGGAGAACTTCTTCTTGA 1608
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1664 TGATTCCAAGAATGGTCGTATTCAGATTGAGCTTCAGTGGAGAAATTCTTCTTGA 1718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79417262190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5