BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312946
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20220.1 | Symbols: | Alba DNA/RNA-binding protein | chr1:7... 1415 0.0
AT1G20225.1 | Symbols: | Thioredoxin superfamily protein | chr... 987 0.0
AT1G76010.1 | Symbols: | Alba DNA/RNA-binding protein | chr1:2... 532 3e-150
> AT1G20220.1 | Symbols: | Alba DNA/RNA-binding protein | chr1:7004879-7007651
REVERSE LENGTH=1387
Length=1387
Score = 1415 bits (766), Expect = 0.0
Identities = 902/964 (94%), Gaps = 24/964 (2%)
Strand=Plus/Plus
Query 636 GATGGATAAGTATCAGAGAGTGGAGAAGCCGAAGGCGGATACGCCGATTGCTGAGAATGA 695
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 228 GATGGATAAGTATCAGAGAGTTGAGAAGCCGAAGGCGGATACGCCGATTGCTGAGAATGA 287
Query 696 GATTCGTATCACCAGTATGGGTAGGGCACGAAACTACATCACCTATGCGATGGCTCTTCT 755
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 288 GATTCGTATCACCAGTATGGGTAGGGCACGGAACTACATCACCTATGCGATGGCTCTTCT 347
Query 756 TCAGGAAAACAAATCGAATGAAGTTATTTTCAAGGCTATGGGAAGAGCTATCAACAAGAG 815
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 348 TCAGGAAAACAAATCGAATGAAGTTATCTTCAAGGCTATGGGAAGAGCTATCAACAAGAG 407
Query 816 TGTGAACATAGTTGAGCTGATTAAGAGAAGGATTCCTGGTCTTCATCAGATCTCATCTAT 875
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 408 TGTGACCATAGTTGAGCTGATTAAGAGAAGGATTCCTGGTCTTCATCAGATCACATCTAT 467
Query 876 TGGATCCACGGCCATAACAGATACCTGGGAACCTACAGAGGAAGGCCTTCTTCCAATTGA 935
|||||| |||| ||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 468 TGGATCAACGGACATTACAGATACCTGGGAACCTACAGAGGAAGGCCTTCAAACAATTGA 527
Query 936 GACCACAAGGCATGTGTCGATGATAACCATAACACTTTCGAAGGAGGAGTTGAACACATC 995
|||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 528 GACCACGAGGCATGTGTCGATGATAACCATAACACTTTCCAAGGAGCAGTTGAACACATC 587
Query 996 CTCGGTTGGGTACCAGTGTCCTATTCCTATTGAGATGGTGAAGCCATTCGCTGAGGTTGA 1055
||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||
Sbjct 588 CTCAGTTGGGTACCAGTGTCCGATTCCTATTGAGATGGTGAAGCCATTGGCTGAGATTGA 647
Query 1056 TTACgaaggacaagagggatctcctagaggcagaggaggaaga-g-gc-agaggaggaag 1112
|||||||| ||||| ||||||||||||||||||||||||||| | | |||||||||||
Sbjct 648 CTACGAAGGGCAAGACGGATCTCCTAGAGGCAGAGGAGGAAGAAGAGGTAGAGGAGGAAG 707
Query 1113 aggaagaggaaggggaagaggcggcagaggaaATGGATATGTGAATGCTGAGTATGATGA 1172
|||||| |||||||||||||| || |||||||||||| || ||||| ||||||||||||
Sbjct 708 AGGAAGGGGAAGGGGAAGAGGTGGTAGAGGAAATGGACCTGCGAATGTTGAGTATGATGA 767
Query 1173 TGGAGGAAGGGGAAGAGGTGGCAGAGGAAATGGATATGTGAACAATGAGTATGATGATGG 1232
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 768 TGGAGGAAGGGGAAGAGGTGGCAGAGGAAACGGATATGTGAACAATGAGTATGATGATGG 827
Query 1233 AGGAAGGGGAAGAGGCGGCAGAGGAAGCGGATATGTGAACAATGAGTATAATGATGGAGG 1292
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 828 AGGAAGGGGAAGAGGCGGCAGAGGAAGTGGATATGTGAACAATGAGTATAATGATGGAGG 887
Query 1293 TATGGAGCAGGACCGGTCATATGGCAGAGGACGAGGGCGTGGGAGAGGAGGAGGACGTGG 1352
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 888 TATGGAGCAGGACCGGTCATATGGCAGAGGACGCGGGCGTGGGAGAGGAGGTGGACGTGG 947
Query 1353 TGGTCGAGGAAGAGGAGGGTACAATGGCCCTCCACCTTACTATGAAGCTCAACCTTACTA 1412
|||||||||||||||||| ||||||||||| || | || | | ||||||||
Sbjct 948 TGGTCGAGGAAGAGGAGGTTACAATGGCCC-CC-C---AC-------C--A-CCTTACTA 992
Query 1413 TGAAGCTCAACAAGATGGAG-A--CTATGGA-A-A-CAATGCTGCTCCTCCAGCAGACCA 1466
|||||||||||||||||||| | ||||||| | | ||||| ||||||||||||||||||
Sbjct 993 TGAAGCTCAACAAGATGGAGGAGACTATGGATACAACAATGTTGCTCCTCCAGCAGACCA 1052
Query 1467 TGGATATGATGGTCCTCCGCCTCAGGGCCGTGGACGTGGCCGTGGAAGGGGAGGTCGTGG 1526
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1053 TGGATATGATGGTCCTCCGCCTCAGGGACGTGGACGTGGCCGTGGAAGGGGAGGTCGTGG 1112
Query 1527 AAGAGGAGGAGGCCGTGGTGGATTCAACAGATCAAATGGAGCACCTATTCAGGCTGCTGC 1586
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1113 AAGAGGAGGAGGCCGTGGTGGATTCAACAGATCAAATGGAGCACCTATCCAGGCTGCTGC 1172
Query 1587 TTGA 1590
|||
Sbjct 1173 ATGA 1176
Score = 174 bits (94), Expect = 2e-42
Identities = 110/118 (93%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1118 gaggaaggggaagaggcggcagaggaaATGGATATGTGAATGCTGAGTATGATGATGGAG 1177
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 770 GAGGAAGGGGAAGAGGTGGCAGAGGAAACGGATATGTGAACAATGAGTATGATGATGGAG 829
Query 1178 GAAGGGGAAGAGGTGGCAGAGGAAATGGATATGTGAACAATGAGTATGATGATGGAGG 1235
||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 830 GAAGGGGAAGAGGCGGCAGAGGAAGTGGATATGTGAACAATGAGTATAATGATGGAGG 887
Score = 159 bits (86), Expect = 6e-38
Identities = 106/116 (91%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 1177 GGAAGGGGAAGAGGTGGCAGAGGAAATGGATATGTGAACAATGAGTATGATGATGGAGGA 1236
||||||||||||||||| |||||||||||| || ||| |||||||||||||||||||
Sbjct 715 GGAAGGGGAAGAGGTGGTAGAGGAAATGGACCTGCGAATGTTGAGTATGATGATGGAGGA 774
Query 1237 AGGGGAAGAGGCGGCAGAGGAAGCGGATATGTGAACAATGAGTATAATGATGGAGG 1292
||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 775 AGGGGAAGAGGTGGCAGAGGAAACGGATATGTGAACAATGAGTATGATGATGGAGG 830
> AT1G20225.1 | Symbols: | Thioredoxin superfamily protein | chr1:7007756-7009333
REVERSE LENGTH=927
Length=927
Score = 987 bits (534), Expect = 0.0
Identities = 603/637 (95%), Gaps = 2/637 (0%)
Strand=Plus/Plus
Query 1 ATGATGATTCGATCGGCGTTAGTGTTCGTTGTCTTCTTCGTCGGAATAGTCGTACAAGCT 60
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 16 ATGATGATTCGAACGGCGTTAGTGTTCGTTGTCTTCTTCGTCGGAACAGTCGTACAAGCG 75
Query 61 CAGCTCATACCTCCGGCGAGGCGTGATGGATTCGTGTATCCACCGGGTCGGAAAATTAAC 120
||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 76 CAGCTGATACCTCCGGCGAGGCGTGATGGATTTTTGTATCCACCGGGTCGGAAAATCGAC 135
Query 121 CCGGATACGATACTTATCGAGGCGTATTTTGACCCGGTTTGTCCGGATTGTAGAGACGCT 180
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 136 CGGGATACGATACTTATCGAGGCGTATATTGACCCGGTTTGTCCGGATTGTAGAGACGCT 195
Query 181 TGGGAGCCACTAAAGCTAGCGATTGATCACTATGGATCTCGCGTTGCTCTTGTTCTTCAT 240
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 TGGGAGCCGCTAAAGCTAGCGATTGATCACTATGGATCTCGCGTTGCTCTTGTTCTTCAC 255
Query 241 CTCATTCCTTTACCCTTCCATGACAATGCATTTGTAGCGTCTCGGGCTTTACACATTGTT 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 256 CTCATTCCTTTACCCTTCCATGACAATGCATTTGTAGCATCTCGGGCTTTACACATCGTT 315
Query 301 GATACCTTAAACGCCAACGCCACGTTTAATTTGCTGGAAGGGATCTTTAAGCATCAGGCA 360
||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| ||
Sbjct 316 GATACCTTAAACGCCAATGCCACGTTCAATTTGCTGGAAGGGATCTTCAAGCATCAGACA 375
Query 361 TTGTTTTACAACTCGCAAACACAACTCATGTCAAGACCTGCAGTTGTGGAT-AATTTAAT 419
||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 376 TTGTTCTACAACTCGCAAACACAACTCATGTCAAGACCTGCAGTTGTGGAAGAATT-AAT 434
Query 420 CAAGCTCGGAACAGTTACATTGGGAAATTCATATCATTCTCCTCTGATATCTGGCTTCAG 479
|||||| ||||||||||| || ||||| ||||||||||||||| ||| ||||||||||||
Sbjct 435 CAAGCTTGGAACAGTTACGTTAGGAAACTCATATCATTCTCCTTTGAAATCTGGCTTCAG 494
Query 480 CAACTCAAAATCTGATCTTGCTACTAGAGTTTCCTTCAAGTATAGCGTTTCAAGAGGAGT 539
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 495 CAACTCAAAATCTGATCTTGCCACTAGAGTTTCCTTCAAGTATAGCGTCTCAAGAGGAGT 554
Query 540 CTCAGCGACACCAACCTTCTACGTGAATGGGTTCGAGCTGCCCGGTGCTGGTTCTCCTAA 599
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 555 CTCCGCGACACCAACCTTCTACGTGAATGGATTCGAGCTGCCTGGTGCTGGTTCTCCCAA 614
Query 600 AGATTATGAAGGATGGAGAGACACCATTGATCCTCTG 636
|||||||||||||||||||||||||||||||||||||
Sbjct 615 AGATTATGAAGGATGGAGAGACACCATTGATCCTCTG 651
> AT1G76010.1 | Symbols: | Alba DNA/RNA-binding protein | chr1:28528077-28530790
REVERSE LENGTH=1636
Length=1636
Score = 532 bits (288), Expect = 3e-150
Identities = 469/554 (85%), Gaps = 22/554 (4%)
Strand=Plus/Plus
Query 636 GATGGATAAGTATCAGA-GAGTGGAGAAGCCGAAGGCGGATACGCCGATTGCTGAGAATG 694
||||||||||||||| | |||||| ||||||||| |||||||||||||||| || |||||
Sbjct 155 GATGGATAAGTATCA-ACGAGTGGTGAAGCCGAAAGCGGATACGCCGATTGATGCGAATG 213
Query 695 AGATTCGTATCACCAGT-ATGGGTAGGGCACGAAACTACATCACCTATGCGATGGCTCTT 753
||||||||||||| ||| | || |||||||||||||||||||||||||||||| |||||
Sbjct 214 AGATTCGTATCACTAGTCA-AGGCAGGGCACGAAACTACATCACCTATGCGATGACTCTT 272
Query 754 CTTCAGGA-AAACAAATCGAA-TGAAGTTATTTTCAAGGCTATGGGAAGAGCTATCAACA 811
|||||||| ||| || || ||||||| | |||||||| |||||||||||||||||||
Sbjct 273 CTTCAGGATAAAGGG-TC-AACTGAAGTTGTATTCAAGGCAATGGGAAGAGCTATCAACA 330
Query 812 AGAGTGTGAACATAGTTGAGCTGATTAAGAGAAGGATTCCTGGTCTTCATCAGATCTCAT 871
||| ||||| ||| || |||||||||||||||||||| |||| ||||||||||| | |||
Sbjct 331 AGACTGTGACCATTGTAGAGCTGATTAAGAGAAGGATCCCTGATCTTCATCAGAACACAT 390
Query 872 CTATTGGATCCACGGCCATAACAGATACCTGGGAACCTACAGAGGAAGGCCTTCTTCCAA 931
||||||||||||| | ||| ||||| || |||||||| ||||||||||||||||| ||
Sbjct 391 CTATTGGATCCACAGACATCACAGACACATGGGAACCAACAGAGGAAGGCCTTCTACCT- 449
Query 932 TTG-AGACCACAAGGCATGTGTCGATGATAACCATAACACTTTCGAAGGAG-GAG-TTGA 988
||| |||| |||||||||||||| ||||||||||| || || || ||| | ||| || |
Sbjct 450 TTGGAGACTACAAGGCATGTGTCAATGATAACCATTACCCTATCCAAG-ATTGAGCTT-A 507
Query 989 ACACATCCTCGGTTGGGTACCAGTGTCCTATTCCTATTGAGATGGTGAAGCCATTCG-CT 1047
| || ||||| |||||||||||||| || |||||||||||| ||||||||||| | | |
Sbjct 508 ATACCTCCTCTGTTGGGTACCAGTGCCCAATTCCTATTGAGTTGGTGAAGCCAATGGGC- 566
Query 1048 GAGGTTGATTACgaaggacaagagggatctcctagaggcagagg-agg--aagaggcaga 1104
|| ||||||| ||||||| |||||| || ||| | |||||||| ||| |||||| | |
Sbjct 567 GATATTGATTATGAAGGACGAGAGGGTTCACCTGGTGGCAGAGGGAGGGGAAGAGG-A-A 624
Query 1105 ggaggaagaggaagaggaaggggaagaggcggcagaggaaATGGATATGTGAATGCTGAG 1164
| |||||| |||||||||||||| |||| ||||||||||||| |||||||| | ||||
Sbjct 625 G-AGGAAGGGGAAGAGGAAGGGGGCGAGGTGGCAGAGGAAATGCTTATGTGAACGTTGAG 683
Query 1165 TATGATGATGGAGG 1178
|||| ||||||||
Sbjct 684 CATGAAGATGGAGG 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78513652380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5