BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312968
Length=1839
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20530.1 | Symbols: | Protein of unknown function (DUF630 a... 2793 0.0
> AT1G20530.1 | Symbols: | Protein of unknown function (DUF630
and DUF632) | chr1:7108370-7110377 REVERSE LENGTH=1845
Length=1845
Score = 2793 bits (1512), Expect = 0.0
Identities = 1741/1851 (94%), Gaps = 18/1851 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTGCTCCCCCTCAAAGCTCGACGGTTTACCGGCCGTCTCTCTATGCCGTGACCGC 60
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGGTTGCTCCCCCTCCAAGCTCGACGGTTTACCGGCCGTATCTCTATGCCGTGACCGC 60
Query 61 TGCAACTCACTAGAAGACACTCTCCGGCGAAGCTACGCCTTAGCCGACGCTCACTCAGCT 120
|||| |||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGCAGCTCACTCGAAGATACGCTCCGGCGAAGCTACGCCTTAGCCGACGCTCACTCAGCT 120
Query 121 TATCTCCTCTCTCTAAACACCGTCGGTCCTGCTCTTCATAGATTCTTCCAACAAGCCGTC 180
|||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 121 TATCTCCTTTCTCTGAACACCGTCGGTCCAGCTCTCCATAGATTCTTCCAACATGCCGTC 180
Query 181 GAGTCTCCACCAGATGTTGAATCCGAAGCCGACCAATCCCCGGAGACGTATTCGCCGGAA 240
|||||||| || ||||||||||||||||| ||| |||| |||||||||||||| ||||||
Sbjct 181 GAGTCTCCGCCGGATGTTGAATCCGAAGCTGACGAATCACCGGAGACGTATTCTCCGGAA 240
Query 241 TCCTCTT-CTCCATCTCACTCCGTTACCAGTTCAGATTCCGATTCGCCTCCCAAATTCGA 299
|||| || || | ||||||| ||||||||||| |||||||||| ||||||||| |||||
Sbjct 241 TCCTGTTCCT-CGGCTCACTCGGTTACCAGTTCTGATTCCGATTTGCCTCCCAAGTTCGA 299
Query 300 TTCGGATTGTGAGGAAGAAGATGAAGGTACGAATTGCGATCTTTTCAGCTGTCCAAAA-C 358
||||||||||||||||| | ||||||||||||||||||||| || ||| || ||||| |
Sbjct 300 TTCGGATTGTGAGGAAG--G-TGAAGGTACGAATTGCGATCTCTTAAGCGGTTCAAAACC 356
Query 359 TCGAATCACTAAATCTTAATCATGACTCGTTTTACTCCCGGAGATACGAATCCGGCACCA 418
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 357 T-GAATCTCTAAATCTTAATCATGACTCGTTCTACTCCCGGAGATACGAATCCGGCACCA 415
Query 419 TAACGCCGCCTCCACCGCCGCCGGCTCCGAGTAATTACGCTTGGGATTTTATCAATTTCT 478
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TAACGCCGCCTCCTCCACCGCCGGCTCCGAGTAATTACGCTTGGGATTTTATCAATTTCT 475
Query 479 TCGAGAACTATGAGTTTCCGTACATTACGAATGCCAAAGATTTGAAAGATAGAGAGACCA 538
|||||| ||||||| ||||||||| |||| ||| ||| |||||||| |||||||||||||
Sbjct 476 TCGAGAGCTATGAGCTTCCGTACACTACGGATGTCAATGATTTGAAGGATAGAGAGACCA 535
Query 539 CTCGTTTTCATGAAGAAGATAAGTTGACGAAGAAGAAGATTACTGTGAGCC-aaa--at- 594
||| || |||||||||||||||||||| ||||||||||||||||||||||| ||| ||
Sbjct 536 CTCCTTCTCATGAAGAAGATAAGTTGAAGAAGAAGAAGATTACTGTGAGCCAAAACGATG 595
Query 595 -----attaaaataaaagaagagaagaaaactctgagaatctcaaagaaaaataggaaga 649
|||||| || |||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 596 AGAAGATTAAAGTAGAAGAAGAGAAAAAAACTCTGAGAATCTCAGAGAAAAATAGGAAGC 655
Query 650 GTGCTCCTAAAGAATCAAAGAATCATAAAGTTTCATCAGATTTCTCTGAAGTCACAAAGC 709
|||||||||||||||||||| |||| ||||||||||||||||| |||||||| |||||||
Sbjct 656 GTGCTCCTAAAGAATCAAAGGATCAAAAAGTTTCATCAGATTTATCTGAAGTAACAAAGC 715
Query 710 AATTGCAAGAAATGTTCAAGAAAGCTTCAGAATCAGGGAATGATGTTTCGAAGATGTTCG 769
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 716 AATTGCAGGAAATGTTCAAGAAAGCTTCAGAATCAGGGAATGATGTTTCGAAGATGTTTG 775
Query 770 ACACTTCCAGATTCAGATACTACCAGAAAAGCTCTGTTTATCAATGTAATGTTCGAGTTC 829
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 776 ACACTTCCAGATTCAGATACTACCAGAAAAGCTCTGTTTATCAATGTAATGTTCGAATTC 835
Query 830 TTCTTCCTTCTTCAAACATTCTCTACACGAAGAAGGTGATGACTCCATTTGATCCCAAAC 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TTCTTCCTTCTTCAAACATTCTCTACACGAAGAAGGTGATGACTCCATTTGATCCCAAAC 895
Query 890 CAGTGGAAGAATCTGATTTCAATAATCTTTCATCTACTCTGAAGAAACTATTT-ATGTGG 948
|||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 896 CAGTGGAAGAATCTAATTTCAATAATCTTTCATCTACTCTGAAGAAACT-TTTCATGTGG 954
Query 949 GAGAAGAAACTGTACCAAGAAGTAAAGGCTGAGGAGAAACTCCGAACTTCTCACATGAAG 1008
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 955 GAGAAGAAACTGTACCAAGAAGTAAAGGCTGAGGAGAAACTCCGAACATCTCACATGAAG 1014
Query 1009 AACTACAAACAACTGAGGAGATTGGAAGCAAAAAGTGCAGATCTAAGCAAAGTTGAAGTT 1068
|||||||||| | |||||||||||||||||||||||||||||||||||||| | |||| |
Sbjct 1015 AACTACAAACTATTGAGGAGATTGGAAGCAAAAAGTGCAGATCTAAGCAAAATCGAAGCT 1074
Query 1069 ATTCGTTCTTCGGTTCAGTGTTTGTCTACAAGAATGAGAGTCTCTATCCATAAGATAAAC 1128
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1075 ATTCGTTCTTCGATTCAGTGTTTGTCTACAAGAATGAGAGTTTCTATCCATAAGATAAAC 1134
Query 1129 AACATTTGTCTGACGATAAACAAGTTACGCGATGAAGAGCTCTGGTCCCAAATGAAAGAA 1188
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1135 AACATTTGTCTGACGATAAACAAGTTACGCGATGAAGAGCTCTGGTTCCAAATGAAAGAG 1194
Query 1189 TTGATCCACAGGTTGTCTGTGATGTGGAGCTCTATGCTAGAATGTCACAGGAGACAATCT 1248
||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||
Sbjct 1195 TTGATCCACAGGTTGTCTGAGATGTGGAACTCTATGCTAGAATGTCACAGTAGACAATCT 1254
Query 1249 AAAGTGATCGCAGAGGCTAAGAAGCTTGATAAGATGACAATAAAGGAGAATCTAGACTTA 1308
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 AAAGTAATTGCAGAGGCTAAGAAGCTTGATAAGATGACAATAAAGGAGAATCTAGACTTA 1314
Query 1309 TCTCAGCTTGAGCTTGCTATGGAATTGAAACTGGAGTTGAGGAACTGGAGCCTAAGCCTG 1368
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1315 TCTCAGCTTGAGCTTGCTATGGAATTGAAACTGGAGTTGAGGAACTGGAGTCTAAGCATG 1374
Query 1369 TCCAACTGGATAGACGCTCAGGCTCAGTATGTTAAAGCTTTGAACAGTTGGCTAATGCGA 1428
|| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1375 TCGAACTGGATAGATGCTCAGGCTCAGTATGTTAAAGCCTTGAACAATTGGCTAATGCGA 1434
Query 1429 TATTTAAAGCAAGAACCTCAAGTACCAACACCAGATCTCTCAGAAGAGCCACCATTGTTT 1488
| |||||| || |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1435 TGTTTAAAACAGGAACCTCAAGAACCAACACCAGATCTCTCAGAAGAGCCACCATTGTTT 1494
Query 1489 GGTGCTATTAACACTTGGTCACAAACCCTTGAGAGATCACACGGAGAGAAGGAGTTTACG 1548
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1495 GGTGCTATTAACACTTGGTCACAAAACCTTGAGATATCACACGGAGAGAAGGAGTTTACA 1554
Query 1549 GAAGCGGTTTACACGATTTTGATGCATGTAAACCGTCAGGTTGAGAAACAGAGGATGGAA 1608
|||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||
Sbjct 1555 GAAGCGGTTTACACGATTTTGATGCACGTAAACCATCAGGTGGAGAAACAGAGGATGGAA 1614
Query 1609 TTGGAAGAGCAGAGGAATGTTAATGGTAGCGTAAAGGATATAGAGAGGAAGCTCATGATG 1668
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 1615 TTGGAAGAGCAGAGGAATGTTAATGGCAGCGTAAAGGATATAGAAAGGAAGCTTATGATG 1674
Query 1669 TTAGAGAAGGAAGAGCAGAAGATGCAGAGGAAGATGAAGACAGTACCATCTGTTGAATTA 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1675 TTAGAGAAGGAAGAGCAGAAGATGCAGAGGAAGATGAAGACAGTACCATCTGTTGCATTA 1734
Query 1729 GTGGGGAGTTTAAATCTGAAGTCTAACATGGAACAGATATTCAAATCTATGGAGAAATTA 1788
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1735 ATGGGGAGTTTAAATCTGAAGTCTAACATGGAACAGATATTCAAATCGATGGAGAAATTA 1794
Query 1789 GCTACAAACTCAAAGCAGACTTATGAGGAACTTGACTTGATGTGCACGTAA 1839
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 GCTACAAACTCAAAGCAGACTTATGAGGAACTTGACTTGATGTGCACGTAA 1845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91013588085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5