BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312981
Length=594
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20710.1 | Symbols: WOX10 | WUSCHEL related homeobox 10 | ch... 843 0.0
> AT1G20710.1 | Symbols: WOX10 | WUSCHEL related homeobox 10 |
chr1:7184485-7185267 FORWARD LENGTH=594
Length=594
Score = 843 bits (456), Expect = 0.0
Identities = 552/598 (92%), Gaps = 8/598 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCAAGAGAGCCTAAACGGTACGTTTGATGA-TAGAGTAATGACGGAGGAGCAAAT 59
||||||||||||||||||||||||| || || | | ||||||||||||||| || |||||
Sbjct 1 ATGGAGCAAGAGAGCCTAAACGGTAGGTATGGT-AGTAGAGTAATGACGGATGAACAAAT 59
Query 60 GGAGGCTCTCCGTAAGCAAATCGCCATTTACGCAGTTCTTTGTGACCAGCTCGTCTTCCT 119
|||| |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 60 GGAGACTCTTCGTAAGCAAATCGCCATTTACGCCGTTCTTTGCGACCAGCTCGTCTTCCT 119
Query 120 CCACAATTCTCTTTCTTCTGTCCCACTTCTCTCATCAGGAATGAATTCAATGGGAGGCGG 179
|||||| ||||| ||||||||||| ||||| ||||||||||||||| ||||| |||| |
Sbjct 120 CCACAACTCTCTCTCTTCTGTCCCTCTTCTTTCATCAGGAATGAATCCAATGAGAGG-TG 178
Query 180 A-TACTTTGATCCGATGGTGGCATCGTCAAGCGCTCATGGAATGTCGACTCGGCATCGAT 238
| || |||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 179 AGTATTTTGATCCAATGGTGGCATCGTCAAGCGCTCATGGAATGTCGACTCGGCCTCGAT 238
Query 239 GGACTCCAACGTCAATGCAACTTCAGATTCTCGAGAACATTTACAAGGAAGGAAGTGGAA 298
||||||| ||| ||| ||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 239 GGACTCCTACGACAACGCAACTTCAGATTCTTGAGAACATTTACAAGGAAGGCAGTGGAA 298
Query 299 CCCCAAATCCGCGGAGAATTAAAGAGATCACGATGGAACTGTCTGAACATGGAGAAATCA 358
| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 299 CACCAAATCCGCGGAGGATTAAAGAGATCACGATGGAACTGTCTGAACATGGACAAATCA 358
Query 359 CGGAGAAAAGTGTCTACAATTGGTTTCAAAACCGACGAGCTCGGTCCAAACGAAAGCAAC 418
|||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGGAGAAAAATGTATACCATTGGTTTCAAAACCGACGAGCTCGGTCCAAACGAAAGCAAC 418
Query 419 CTCAGACAACGACAATTACCTCTG-GTCAGGCGGATGATGCGGCCGTGACAACAACTGAT 477
||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 419 CTCCGACAACGACAATTACCTC-GAGTCAGGCGGATGATGCGGCCGTGACAACAACTGAG 477
Query 478 GAGAGAGAGAGTTGTGGAGGA-GATTCTGGAGCGTTTGAGTCTTATGAGCATATACTTTT 536
||||||| ||| ||||||| | |||||||||| |||||||||||||||||||||||| ||
Sbjct 478 GAGAGAGGGAGGTGTGGAG-ATGATTCTGGAGGGTTTGAGTCTTATGAGCATATACTGTT 536
Query 537 CCCGAGTCCTGATTTAGGGATTGAGCATTTGCTGAATAGGGACAAGTTTATAGACTGA 594
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 537 CCCGAGTCCTGATTTAGGGATTGAGCATTTGTTGAATAGGGACAAGTTTATAGACTGA 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28583229643
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5