BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313001
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20925.1 | Symbols: | Auxin efflux carrier family protein |... 1929 0.0
AT1G76520.1 | Symbols: | Auxin efflux carrier family protein |... 649 0.0
> AT1G20925.1 | Symbols: | Auxin efflux carrier family protein
| chr1:7289973-7292507 FORWARD LENGTH=1419
Length=1419
Score = 1929 bits (1044), Expect = 0.0
Identities = 1123/1162 (97%), Gaps = 2/1162 (0%)
Strand=Plus/Plus
Query 1 ATGACGATGAGACTTCTGGATCTGTTCATAACCTCATCGATACCAGTTGCGAAGATTCTG 60
|||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 ATGAGGATGAGGCTTTTGGATCTGTTCATAACCTCATCGATACCAGTTGCGAAGATTCTG 318
Query 61 TTGATAACAGGAATCGGATTTTACTTGGCTCTAGATCAAGTTAACATTCTGAATCAAGAC 120
|||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 319 TTGATAACAGGAATTGGATTTTACTTGGCTCTTGATCAAGTTAACATTCTCAATCACGAT 378
Query 121 GCTAGAAAACAACTCAACAATATAGTTTTCTATGTGTTTAGTCCTTCACTTGTTGCAAGC 180
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 379 GCAAGAAAACAACTCAACAATATAGTTTTCTATGTGTTTAGTCCTTCTCTTGTTGCAAGC 438
Query 181 AGTTTATCTGAGACTATTACATACGAAAGCATGGTGAAAATGTGGTTCATGCCGCTTAAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 439 AGTTTATCTGAGACTATTACATACGAAAGCATGGTGAAAATGTGGTTCATGCCACTTAAT 498
Query 241 GTTTTGCTAACATTCATCATTGGTTCGTTTCTT-GGTTGGATTGTTATCAAAATCACTAA 299
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 499 GTTTTGCTAACATTCATCATTGGTTCGTTT-TTGGGTTGGATTGTTATCAAAATCACTAA 557
Query 300 ACCTCCTTCGCATCTCCGTGGCATCATCGTTGGTTGTTGTGCTGCTGGGAATTTGGGGAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 ACCTCCTTCGCATCTCCGTGGCATCATCGTTGGTTGTTGTGCTGCTGGGAATTTGGGGAA 617
Query 360 TATGCCACTCATTATCATCCCAGCTATTTGTAAAGAAAAGGGAAGTCCTTTTGGAGATCC 419
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 618 TATGCCACTCATTATCATCCCAGCTATATGTAATGAAAAGGGAAGTCCTTTTGGAGATCC 677
Query 420 TGAGTCTTGTGAGAAATATGGACTTGGTTATATTGCACTCTCTATGGCGATTGGAGCCAT 479
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 TGAGTCTTGTGAGAAATTTGGACTTGGTTATATTGCACTCTCTATGGCGATTGGAGCCAT 737
Query 480 TTACATATGGACGTACGTATACAATCTTATGCGGATGCTAGCTAATCCTGGTGGAGAAAC 539
|||||||||||| || |||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 738 TTACATATGGACTTATGTATACAATCTTATGCGGATGCTAGCAAATCCTGCTGGAGAAAC 797
Query 540 CGCGATAAACAGTACCTCATCTACAATGCCACTGATTTCTCCCAAAGTCGAAGTTGGGGA 599
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 798 CGCAATAAACAGTACCTCGTCTACAATGCCACTGATTTCTCCCAAAGTCGAAGTTGCGGA 857
Query 600 GCAGGTTGGGACTTGGAGCAAGGTCAAGCAAAGAGTGTCCTCGGTAGCAGAGAAAATCAA 659
||||||||||||||| |||||||||| |||||||||| ||| |||||||||||||||||
Sbjct 858 ACAGGTTGGGACTTGGGGCAAGGTCAAACAAAGAGTGTGCTCTGTAGCAGAGAAAATCAA 917
Query 660 TCTACGAACAATATTTGCTCCTTCAACCATTGCAGCGCTTATCGCGCTTGCGGTTGGGTT 719
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 918 TCTACGAACAATATTTGCTCCTTCAACTATTGCAGCGCTTATCGCGCTTGCGGTTGGGTT 977
Query 720 AAATCCTTTACTACGGAAGCTACTAGTCGGTAACACAGCTCCACTTCGAGTGATTGAGGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 AAATCCTTTACTACGGAAGCTACTAGTCGGTAACACAGCTCCACTTCGAGTGATTGAGGA 1037
Query 780 CTCTGTATCTCTATTGGGGGATGGGGCGATTCCTGTTCTGACTCTCATTGTAGGAGGAAA 839
||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 1038 CTCAGTATCTCTATTGGGGGACGGGGCGATTCCTGTTCTGACTCTGATTGTTGGAGGAAA 1097
Query 840 CCTTCTCAATGGTCTGAGAGGTTCAGGAATGAACAAGTCAGTCATAATGGGTGTGGTGGT 899
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1098 CCTTCTCAATGGTCTGAGAGGTTCAGGAATAAACAAGTCAGTCATAATGGGTGTGGTGGT 1157
Query 900 TGTGCGTTACTTGTTGCTGCCAATATTAGGCGTTTTCATAGTACGAGGAGCGCATTACTT 959
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1158 TGTGCGTTACTTGTTGCTGCCAATATTAGGAGTTTTCATAGTACGAGGAGCGCATTACTT 1217
Query 960 GGGTTTGGTTACATCTGAACCGCTTTACCAGTTTGTTCTTCTGCTTCAGTATGTCGTTCC 1019
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 GGGTTTGGTTACATCCGAACCGCTTTACCAGTTTGTTCTTCTGCTTCAGTATGTCGTTCC 1277
Query 1020 CCCAGCAATGAATCTTGGTACAATCACTCAACTATTCGGATCAGGAGAAAGTGAATGCTC 1079
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 CCCAGCGATGAATCTTGGTACAATCACTCAACTATTCGGATCAGGAGAAAGTGAATGCTC 1337
Query 1080 TGTGATTCTCTTCTGGAGTTATGTCTTGGCTTCAGTTTCTCTCACTGTCTGGCCAACATT 1139
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1338 TGTGATTCTATTCTGGAGTTATGCCTTGGCTTCAGTTTCTCTCACTGTCTGGCCAACATT 1397
Query 1140 CTTCATGTGGCTCGTAGCCTGA 1161
||||||||||||||||||||||
Sbjct 1398 CTTCATGTGGCTCGTAGCCTGA 1419
> AT1G76520.1 | Symbols: | Auxin efflux carrier family protein
| chr1:28715078-28717416 FORWARD LENGTH=1519
Length=1519
Score = 649 bits (351), Expect = 0.0
Identities = 924/1191 (78%), Gaps = 77/1191 (6%)
Strand=Plus/Plus
Query 13 CTTCTGGATCTGTTCATAACCTCATCGATACCAGTTG-CGAAGATTCTGTTGATAACAGG 71
||| |||| ||||||||||| ||||| | |||||| | | |||||||||||||||||
Sbjct 229 CTTTTGGAGCTGTTCATAACTTCATCAAAACCAGTCGTTG-AGATTCTGTTGATAACATC 287
Query 72 AATCGGATTTTACT-TGGCTCTAGATCAAGTTAA-CATTC-TGAATCAAGACGCTAGAAA 128
| |||||||||| | ||||||| ||| ||| || | ||| || ||| || ||| | ||
Sbjct 288 AGTCGGATTTTA-TATGGCTCTCGATGGAGTCAATC-TTCTTG-GTCATGATGCTCGTAA 344
Query 129 ACAACTCAACAATATAGTTTTCTATGTGTTTAGTCCTTCACTTGTTGCAAGCAGTTTATC 188
| | || ||||| || || |||||||||||||||||||| ||| ||| |||| ||||| |
Sbjct 345 ATATCTGAACAACATTGTCTTCTATGTGTTTAGTCCTTCGCTTATTGGAAGCCGTTTAGC 404
Query 189 TGAGACTATTACATACGAAAGCATGGTGAAAATGTGGTTCATGCCGCTTAATGTTTTGCT 248
||| | | |||||||||||||| |||| |||||||||||||||||| | |||||| ||||
Sbjct 405 TGATAGTGTTACATACGAAAGCTTGGTCAAAATGTGGTTCATGCCGGTGAATGTTCTGCT 464
Query 249 AACATTCATCATTGGTTCGTTTCTTGGTTGGATTGTTATCAAAATCACTAAACCTCCTTC 308
||||||||||||||||| || ||||| ||||||||||| |||||||| ||||||||
Sbjct 465 TACATTCATCATTGGTTCATTACTTGGCTGGATTGTTATTGTCATCACTAAGCCTCCTTC 524
Query 309 GCATCTCCGTGG-CATCA-TCGTTGGTTGTTGTGCTGCTGGGAATTTGGGGAATATGCCA 366
|| || ||||| | ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 525 ACACCTTCGTGGTC-TCATTC-TTGGTTGTTGTGCTGCTGGGAATTTGGGGAATATGCCA 582
Query 367 CTCATTATCATCCCAGCTATTTGTAAAGAAAAGGGAAGTCCTTTTGGAGATCCTGAGTCT 426
|| ||||| ||||||||| ||||||||||||| ||| |||| ||||||||||||||| |
Sbjct 583 CTGATTATAATCCCAGCTGTTTGTAAAGAAAAAGGAGGTCCCTTTGGAGATCCTGAGAGT 642
Query 427 TGTGAGAAATATGGACTTGGTTATATTGCACTCTCTATGGCGATTGGAGCCATTTACATA 486
|| ||||||||||| | |||||| |||| ||||| ||||| || ||| | |||||||||
Sbjct 643 TGCCAGAAATATGGAATGGGTTATGTTGCTCTCTCCATGGCTATGGGATCTATTTACATA 702
Query 487 TGGACGTACGTATACAATCTTATGCG-GATGCTAGCTAA-TC-CTGGTGGAGAAACCG-C 542
||||| || ||||||||||||||||| | ||||| | || || | || || || || |
Sbjct 703 TGGACTTATGTATACAATCTTATGCGTG-TGCTATCGAACTCTCCCGTTGA-AACCCCTC 760
Query 543 -----GATAAA-C-AG-TACCTCATCTACAATG--CCACTGATTTCTCCCAAAGTCGAAG 592
| | || | | ||| || |||||| | || || |||||| |||| | ||||
Sbjct 761 CCTCTGTTGAATCCAACTACGACAGCTACAAAGTTCCCCTTATTTCTTCCAAGGAAGAAG 820
Query 593 TTGGGGAGCA---GGTTGGGACTTGG-AGCAAGGTCAAGCAAAGAGTG-TC-CTCGGTAG 646
| || || ||||| ||| | ||| |||||| ||| || | | | ||
Sbjct 821 AAAACAACCAAAAGGCTGGGAGGTGGGAAAAAG-TCAAGCGGAGATTGGTTTCACTGT-- 877
Query 647 CAGAGAAAA-TCAATCT-ACGAACAATATTTGCTCCTTCAACCATTGCAGCGCTTATCGC 704
|| | |||| |||| || | || |||| |||||||| ||||| ||||| ||| | || ||
Sbjct 878 CACA-AAAAGTCAACCTTAAGA-CAATTTTTGCTCCATCAACTATTGCTGCGATGATTGC 935
Query 705 GCTTGCGGTTGGGTTAA--A-TCCTTTACTACGGAAGCTACTAGTCGGTAACACA-GCTC 760
|||| | | ||| | | | ||||||| | |||||||| || |||| | | | ||||
Sbjct 936 ACTTGTGATCGGGCTCATTACTCCTTTA--A-GGAAGCTAATAATCGGCA-CGGAAGCTC 991
Query 761 CACTTCGAGTGATTGAGGACTCTGTATCTCTATTGGGGGATGGGGC-GATTCCTGTTCTG 819
| || || ||| || | ||||| ||| ||||| |||| |||||||| | |||||| ||
Sbjct 992 CTCTCCGGGTGCTTCAAGACTCAGTAACTCTAGTGGGAGATGGGGCAG-TTCCTGCAATG 1050
Query 820 ACTC-TCATTGTAGGAGGAAACCTTCTCAATGGTCTGAG-AGGTTCAGGAATGAACAA-G 876
|| | | ||| ||||||||||||| ||||| ||| |||| || |||||||||||| || |
Sbjct 1051 AC-CATGATTATAGGAGGAAACCTACTCAAAGGTTTGAGGAG-TTCAGGAATGAA-AATG 1107
Query 877 TC-AGTCATAATGGGTGTGGTGGTTGTGCGTTAC-TTGTTGCTGCCAATATTAG-GC-GT 932
|| ||| || || || || |||||| ||||||| || || ||||| ||| || | ||
Sbjct 1108 TCCAGT-ATTATCGGCGTCTTGGTTGCGCGTTACGTT-TTACTGCC--TATGAGCGGTGT 1163
Query 933 TTTCATAGTACGAGGAGCGCATTACTTGGGTTTGGTTACATCTGAACCGCTT-TACCAGT 991
||| || ||| ||||||| || | |||| ||| |||||||| || || ||| ||||| |
Sbjct 1164 TTTAATCGTAAGAGGAGCATATAAGTTGGATTTAGTTACATCAGAGCC-CTTATACCAAT 1222
Query 992 TTGTTCTTCTGCTTCAGTATG-TCGTTCCC-CCAGCAATGAATCTTGGTACAATCACTCA 1049
| |||||||| ||||| |||| | || ||| ||||| |||||||| |||||||| |||||
Sbjct 1223 TCGTTCTTCTTCTTCAATATGCT-GT-CCCACCAGCCATGAATCTAGGTACAATTACTCA 1280
Query 1050 ACTATTCGGATCAGGAGAAAGTGAATGCTCTGTGATTCT-CTTCTGGAGTTATGTCTT-G 1107
|||| ||| | || || ||||||||||| |||||| | || ||||| ||| |||| |
Sbjct 1281 GTTATTTGGAACTGGGGAGAGTGAATGCTCAGTGATTATGCT-CTGGACTTAC-TCTTTG 1338
Query 1108 GCTTCAGTTT-CTCTCACTGTCTGGCCAACATTCTTCATGTGGCTCGTAGC 1157
||||| | || | |||||||| ||||||||||||||||||||||| |||||
Sbjct 1339 GCTTC-GATTGCACTCACTGTTTGGCCAACATTCTTCATGTGGCTTGTAGC 1388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5