BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313015
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21090.1 | Symbols: | Cupredoxin superfamily protein | chr1... 1048 0.0
> AT1G21090.1 | Symbols: | Cupredoxin superfamily protein | chr1:7384629-7386558
FORWARD LENGTH=1313
Length=1313
Score = 1048 bits (567), Expect = 0.0
Identities = 655/697 (94%), Gaps = 7/697 (1%)
Strand=Plus/Plus
Query 11 tcttcttctacttcttttccttcctctct-ttcttctctcgtccttctttttccgcctct 69
|||||||||||||||||| |||||||||| || |||||||| |||||| |||||||| |
Sbjct 260 TCTTCTTCTACTTCTTTTGCTTCCTCTCTCTT-TTCTCTCGCCCTTCTCTTTCCGCCACG 318
Query 70 tttctcgtcgacggtgtctctgtctGGAAAACCCCCACTGTTCATGTCGGCGACTCTGTT 129
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 319 TTTCTCGTCGACGGTGTCTCTGTCTGGAAATCCCCCACTGTTCATACCGGCGACTCTGTT 378
Query 130 ATTTTCAGACATAAGTACGGATACGATCTCTACATCTTCAGAAACAAAGATGCATTCAAT 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 ATTTTCAGACATAAGTACGGATACGATCTCTACATCTTCAGAAACAAAGATGCATTCAAT 438
Query 190 GTCTGCGACTTTACACAAGCCACTCTTCTTACAAAACCTAATTCCACTTCCTTCTCGTGG 249
|||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 439 GTCTGCAACTTTACTCAAGCCACTCTTCTTACTAAACCTAATTCCACTTCCTTCACGTGG 498
Query 250 TATCCATCAAGAACAGGCTCTTACTACTTTTCCTTCACAAACAACACATCTCTTCCCAGA 309
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 499 TATCCATCAAGAACAGGCTCTTACTACTTTTCCTTCACAAACAACACATCTCTTCCCAAA 558
Query 310 ACTTGCCAACTCAACCAGAAGCTCACAGTCCAAGTCATCCTCTCCGCGGCATCACTGCCG 369
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 559 ACATGCCAACTCAACCAGAAGCTCACAGTCCAAGTCATCCTCGCCGCGGCATCACCGCCA 618
Query 370 TCGCAACCACCGGCAAAC-GCCCCTGTTCCGGTTTCTGAAGGAGGAGTGATCTCATCTCC 428
||||||||||| |||| | ||||||||||||||||| |||||||||||||||||||||||
Sbjct 619 TCGCAACCACCAGCAA-CTGCCCCTGTTCCGGTTTCGGAAGGAGGAGTGATCTCATCTCC 677
Query 429 TTCCTCCTACCCTTGGCCATTAGGTCCTAGAGAAGGCTCAGCTTTCTCTCCGGGACCATC 488
||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 678 TTCTTCTTACCCTTGGCCATTAGGTCCTAGAGAAGGTTCAGCTTTCTCTCCGGGACCATC 737
Query 489 TCCATCAGAGATCACGTCTGTGACAGTCCCCGGAAAAGACGGAGTTCCGTTCATCAACAG 548
||||||||||||||||| ||||||||||| || |||||||||||||| |||||||||||
Sbjct 738 CCCATCAGAGATCACGTCAGTGACAGTCCCTGGTAAAGACGGAGTTCCATTCATCAACAG 797
Query 549 TAATCCAGCGGTTCCTCTTCCCACCGGAGAAGTCGACTCTACTTCCATTAATCCTTTACC 608
|||||| || ||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 798 TAATCCGGCAGTTCCTCTTCCTACCGGAGATGTCGACTCTACTTCCATTAACCCTTTACC 857
Query 609 TACTTCCACTAATTCAGCTCATCAGGTGATGATGATGACATTAACGGTGAAGCTAGGTTT 668
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 AACTTCCACTAATTCAGCTCATCAGGTGATGATGATGACATTAACGGTGAAGCTAGGTTT 917
Query 669 GTGTTGTGTAGCCATGTTT-TTC--CTTCTTCTGTAG 702
||||||||||||||||||| || ||| ||||||||
Sbjct 918 GTGTTGTGTAGCCATGTTTCTTTTTCTTGTTCTGTAG 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5