BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313028
Length=762
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21350.3 | Symbols: | Thioredoxin superfamily protein | chr... 1110 0.0
> AT1G21350.3 | Symbols: | Thioredoxin superfamily protein | chr1:7476942-7479042
REVERSE LENGTH=1014
Length=1014
Score = 1110 bits (601), Expect = 0.0
Identities = 715/768 (93%), Gaps = 15/768 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGCCTCCACCGCCGTAACCACCGTGACATACGGAGCTTCATATCA-ACTTCCTTC 59
|||||||||||||||| |||||||||||||||| |||||||||||| | | |||||||||
Sbjct 31 ATGGCTGCCTCCACCGTCGTAACCACCGTGACACACGGAGCTTCATCT-ATACTTCCTTC 89
Query 60 ACGAACCGCATTAGCAATCAATTCCCGGAGACTTTCTAT-ATTCTCGCCGTCAAAAAGGT 118
|||||| ||||||||| || ||||||||| ||||| | |||||||||||| ||||
Sbjct 90 ACGAACTGCATTAGCAGTCTCTTCCCGGAGGTTTTCT-TCATTCTCGCCGTC---GAGGT 145
Query 119 TAGACCTCAGTAATCTGCGGCGGAGAGTCAATGCACCACCGCCAAGTGGCG-C-CGTGGT 176
| ||| |||||||||||||||||||||||||||||||| |||| | |||| | ||||||
Sbjct 146 TGGACTTCAGTAATCTGCGGCGGAGAGTCAATGCACCATCGCC--GAGGCGCCTCGTGGT 203
Query 177 TCGAGCCGCTAGAACTGAGTCAGCCGGAGTAAAATTAGGAGCTAGAGCTCCCAATTTTGA 236
||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 204 TCGCGCCGCTAGAACTGAGTCAGCCGGAGTAAAACTGGGAGCTAGAGCTCCCAATTTTGA 263
Query 237 GCTTCAAGAGCCGCTCACTGGAAACTTATGGAAATTAGAAGACTTTGAACTGTATCCATC 296
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 264 GCTTCCGGAGCCGCTCACTGGAAACTTATGGAAATTAGAAGATTTTGAACTGTATCCGTC 323
Query 297 TCTACTGGTAATGTTCATCTGCAATCATTGCCCGTTTGTGATTCACTTGAAGAAAGACAT 356
||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 324 TCTACTGGTAATGTTCATCTGCAATCATTGCCCGTTTGTGATTCATTTAAAAAAAGACAT 383
Query 357 TGTAAAGCTCTGCAATTTCTATATGAAGAAAGGTCTTGCTGTTGTTGCAATATCTTCAAA 416
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 TGTAAAGCTATGCAATTTCTATATGAAGAAAGGTCTTGCTGTTGTTGCAATATCTTCAAA 443
Query 417 TTCTGTTGTAACTCATCCTCAGGATGGGCCTGAGTTCATGGCAGAGGATGCAAAAGCTTT 476
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 444 TTCTGTGGTAACTCATCCTCAGGATGGGCCTGAGTTCATGGCAGAGGATGCAAAAGTTTT 503
Query 477 CAAATACCAATTTCCTTACTTATATGATGAGTCACAAGAGGTTGCCAGAGAATTTGGAGC 536
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 504 CAAATACCCATTTCCTTACTTATATGATGAGTCACAAGAGGTTGCAAGAGAATTTGGAGC 563
Query 537 TGTTTGTACCCCTGAGTTTTTCTTGTTTAAGAAGGATGGTCGTAGACCATTTGAGCTGGT 596
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 564 TGTTTGTACACCTGAGTTTTTCTTGTATAAGAAGGATGGTCGTAGACCATTTGAGCTGGT 623
Query 597 CTATCATGGCCAGTTTGATGATTCCCGGCCTAGCAATAACAT-ACCAGTAACTGGGAGGG 655
||||||||| || |||||||||||||||||||||| |||| | ||||||||| |||||||
Sbjct 624 CTATCATGGTCAATTTGATGATTCCCGGCCTAGCAGTAAC-TCACCAGTAACCGGGAGGG 682
Query 656 ATCTAAGCCTGGCGATTGATCTTGCCCTTAGCTGTCAACCAATACCATCAAATCAAAAGC 715
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 683 ATCTAAGCCTGGCGATTGATCTTTCCCTTAGCTGTCAACCAATACCATCAAATCAAAAGC 742
Query 716 CAAGTGTTGGTTGCAGCATAAAGTGGCATCCC-GAAACAGAGTCGTGA 762
|||||||||||||||||||||||||||| ||| |||||| |||| |||
Sbjct 743 CAAGTGTTGGTTGCAGCATAAAGTGGCA-CCCAGAAACAAAGTCATGA 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37022566339
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5