BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313035
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21430.1 | Symbols: YUC11 | Flavin-binding monooxygenase fam... 1842 0.0
> AT1G21430.1 | Symbols: YUC11 | Flavin-binding monooxygenase family
protein | chr1:7500845-7502186 FORWARD LENGTH=1176
Length=1176
Score = 1842 bits (997), Expect = 0.0
Identities = 1118/1177 (95%), Gaps = 5/1177 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAAGAGATCAAGATTCTGGTTCTGATTATCGGTGCAGGACCAGCCGGGTTAGCA 60
||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGAGAAAGAAATCAAGATTCTGGTTTTGATTATCGGTGCAGGACCAGCCGGTTTAGCA 60
Query 61 ACATCAGCTTGTCTTAACCGGTTAAACATACCAAACATAGTAGTGGAAAGAGATGATTGC 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 61 ACATCAGCTTGTCTTAACCGGTTGAACATACCAAACATAGTAGTGGAAAGAGATGTTTGC 120
Query 121 AGTGCCTCTCTGTGGAAAAGAAGGTCTTACGATCGTCTCAAGCTTCACCTCGCAAAGCAA 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 AGTGCCTCTCTGTGGAAAAGAAGGTCTTACGATCGTCTCAAGCTCCACCTCGCAAAGCAA 180
Query 181 TTCTGTCAACTCCCTTACATGCCATTCCCCTCAAACGCTCCTACCTTCGTCTCCAAGCTA 240
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 TTCTGTCAACTCCCTCACATGCCATTCCCCTCAAACACTCCTACCTTCGTCTCCAAGCTA 240
Query 241 GGGTTCATCAATTACCTTGACGAATACGCCACACGTTTCAACGTAACCCCTAGGTACAAC 300
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 GGTTTCATCAATTACCTTGACGAATACGCCACACGTTTCAACGTAAACCCTAGGTACAAC 300
Query 301 CGGAATGTCAAATCCGCCTACTTCAAAGATGGTCAGTGGATTGTGAAGGTGGTAAACAAA 360
||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 301 CGGAACGTCAAATCCGCGTACTTCAAAGATGGTCAATGGATCGTGAAGGTGGTGAACAAA 360
Query 361 ACTACGGCGTTAATAGAAGTCTACTCGGCGAAGTTTATGGTTGCTGCGACGGGGGAGAAT 420
|| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 361 ACCACGGCGTTGATAGAAGTTTACTCGGCGAAGTTTATGGTTGCTGCGACGGGAGAGAAT 420
Query 421 GGCGAAGGTGTGATTCCAGAGATTCCGGGGCTTGTAGAGAGCTTTCAAGGAGAGTATTTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 GGCGAAGGTGTGATTCCAGAGATTCCGGGGCTTGTAGAGAGCTTTCAAGGAAAGTATTTG 480
Query 481 CACTCAAGTGAGTACAAGAACGGCGAGAAGTTCGCCGGAAAAGATGTTTTGGTCGTCGGA 540
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 481 CACTCAAGTGAGTACAAGAACGGAGAGAAGTTCGCTGGAAAAGATGTTTTGGTCGTCGGA 540
Query 541 TGTGGAAATTCCGGCATGGAGATTGCTTATGATCTGTCTAAGTGCAACGCTAAGGTCTCC 600
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 541 TGTGGAAATTCTGGCATGGAGATTGCTTATGATCTATCTAAGTGCAACGCTAATGTCTCC 600
Query 601 ATCGTTGTTCGTAGCCCGGTGCACGTGTTGACGAGATGGATCGTAAGGATAGGAATGTCG 660
|||||||||||||||| |||||||||||| |||||||| |||||| ||||||||||||||
Sbjct 601 ATCGTTGTTCGTAGCCAGGTGCACGTGTTAACGAGATGTATCGTACGGATAGGAATGTCG 660
Query 661 TTGCTCAGGTTTTTCCCGGTAAAATTAGTTGACCGTTTGTGTCTATTACTAGCGGAGCTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTGCTCAGGTTTTTCCCGGTAAAATTAGTTGACCGTTTGTGTCTATTACTAGCGGAGCTG 720
Query 721 AGCTTTGGGAATACTTTGAGATATGGGCTTGTAAGACCCAAGAATGGCCCATT-CATGAA 779
|| ||| ||||||||| |||||||||||||||||||||||| ||||||||||| | ||||
Sbjct 721 AGGTTTCGGAATACTTCGAGATATGGGCTTGTAAGACCCAATAATGGCCCATTTC-TGAA 779
Query 780 TAAGCTAATCACCGGCCGGTCACCTACCATTGACGTCGGCTGCGTCGGAGAGATAAAGTC 839
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 780 CAAGCTAATCACCGGCCGGTCAGCTACCATTGACGTCGGCTGCGTCGGAGAGATAAAGTC 839
Query 840 CGGCAAGATTCAGGTTGTGACGTCTATTAAACGTATAGAAGGGAAGAGAGTTGAATTCGT 899
|||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||||| |
Sbjct 840 CGGCAAGATTCAGGTTGTGACGTCGATTAAGCGTATAGAAGGGAAGACAGTAGAATTCAT 899
Query 900 CGATGGGAACACCAAAAATGTGGACTCCATTGTCTTCGCAACTGGTTACAAAAGCAGCGT 959
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CGATGGAAACACCAAAAATGTGGACTCCATTGTCTTCGCAACTGGTTACAAAAGCAGCGT 959
Query 960 TACAAAATGGCTTAAGGTCGATGATGGAGATCTGTTCAACGAGAAGGGGATGCCGAAACG 1019
| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 960 TTCAAAATGGCTTGAGGTCGATGATGGAGATCTGTTCAACGAGAATGGGATGCCGAAACG 1019
Query 1020 CGAGTTCCCGGATCACTGGAAGGGGAAGAATGGTTTGTATAGTGTTGGGTTTGGGAGACA 1079
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||
Sbjct 1020 CGAGTTCCCGGATCACTGGAAGGGGAAGAATGGTTTGTATAGTGCTGGCTTTGGGAAACA 1079
Query 1080 AGGCTTGGCTGGTATTTCAAGAGATGCTCAAAACGTTGCTAGAGACATTGCTTCTCTGGT 1139
||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||
Sbjct 1080 AGGCTTGGCTGGTATTTCAAGAGATGCTCGGAACATTGCTAGAGACATTGATTCTCTGGT 1139
Query 1140 TTGTCAGAGAAGTA--A-GAACAAGCTTTCCAAATAA 1173
|||| |||||| | | |||||||||||||||||||
Sbjct 1140 TTGTGGGAGAAGCAGCAAGAACAAGCTTTCCAAATAA 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57580025115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5