BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg313041 Length=1086 Score E Sequences producing significant alignments: (Bits) Value AT1G21490.1 | Symbols: | pseudogene, hypothetical protein | ch... 1247 0.0 > AT1G21490.1 | Symbols: | pseudogene, hypothetical protein | chr1:7527079-7528202 REVERSE LENGTH=1124 Length=1124 Score = 1247 bits (675), Expect = 0.0 Identities = 975/1115 (87%), Gaps = 39/1115 (3%) Strand=Plus/Plus Query 1 ATGTTATC-AGATCTACCATTTGATTTGGTAGATGAAATACTTTCTAGGGTTCCAACAAA 59 |||||||| | ||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 4 ATGTTATCTA-ATCTACCATATGATTTGATAGATGAAATACTTTCTAGGGTTCCAACAAA 62 Query 60 ATTTCTCGTACGACTCCGATCTACTTGCAAACGATGGAATTCTCTATTTGACAATCATAG 119 || |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 63 ATCTCTCATACGACTCCGATCTACTTGCAAACGATGGAATTCTCTATTTGACGATCATGG 122 Query 120 ATTTTCCAAGAAACACTTTGGTAATGCCATCAAACAAAGTATGTTTATCTTATT-CTCTG 178 |||||| ||||||||||||| ||||||||| ||||||| ||||||||||||||| || || Sbjct 123 ATTTTCTAAGAAACACTTTGATAATGCCATGAAACAAAATATGTTTATCTTATTCCT-TG 181 Query 179 ATTTGAAATTTTTTACAATTAGTTGTGAACTCCAAAAACCCGATTG----TTACAACGTT 234 ||||||| |||||||| |||||||||||||||||||||| ||||| |||||||||| Sbjct 182 ATTTGAATTTTTTTACGATTAGTTGTGAACTCCAAAAACGGGATTGTACCTTACAACGTT 241 Query 235 AGTCGTTGTAAAATTAGTCTAAAAGAATGTATTTGCAAAGGAGAATGTAAAGTATTTGAA 294 | | |||||||| ||| ||||| |||||||||||| ||| | ||||| |||| |||||| Sbjct 242 ACTAGTTGTAAACTTAATCTAACAGAATGTATTTGTAAAAAAAAATGTGAAGTGTTTGAA 301 Query 295 ATTCTTCACTGCGACGGTTTACTCTTAGGCCTCACAA-ACTGTTTTGAACTTATAGTCTG 353 ||||||| ||||||||||||||||| |||||||||| | ||||||||| |||||||||| Sbjct 302 GTTCTTCATTGCGACGGTTTACTCTTCGGCCTCACAAGA-TGTTTTGAAATTATAGTCTG 360 Query 354 GAACCCATGTTTAAAGCAAACAAAGTTGATTGAACCACACTTCCATAAACTACATACT-C 412 |||||||||||||||||||||||||| |||||||| |||| | |||||| ||| |||| | Sbjct 361 GAACCCATGTTTAAAGCAAACAAAGTGGATTGAACGACACATACATAAAGTACGTACTAC 420 Query 413 -CA-ACTCCTGGATATGCTTTTGGGTGCGATAAAAAATACGGTGATCGTCGATACAAGAT 470 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TAATACTCCTGGATATGCTTTTGGGTGCGATAAAAAATACGGTGATCGTCGATACAAGAT 480 Query 471 CTTATTGTTTCTAGTATC----TGGATATTCCCGTAAATTTTGTAAGAAATATTTAGAGG 526 ||| ||||||| || | | ||| ||||| ||||||| ||| |||||||||||||| Sbjct 481 CTTGTTGTTTCCAGCAGCCAGCTGGC-ATTCCTGTAAATTCTGTTTGAAATATTTAGAGG 539 Query 527 TTGAAATATTTGATTTTACGTCTAACTCTTGGAGAGTTCTTAACGTTAAAATCGATTTTC 586 ||||||||| ||| ||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 540 TTGAAATATATGACTTTACGTCTAACTCTTGGAGAGTTCTTAACGTTGAAATTGATTTTC 599 Query 587 TGCTTGTTTTTCCTACTCGTTGGGTATCCTTGGAA-GGAAATTCTTATTGGATTGGTGCA 645 | |||| |||||||||||||||||||||||| || || ||||||||||||||||||||| Sbjct 600 TTCTTGAATTTCCTACTCGTTGGGTATCCTTG-AATGGGAATTCTTATTGGATTGGTGCA 658 Query 646 GATGAAAATACGCATGAAGGTTTCATTGTGAGATTTGATTTTTCAAATGAGATGTTCGGA 705 ||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| ||| Sbjct 659 GATGAAAATACGCATGAAGGTGTCATTGTGACATTTGATTTTTCAGCTGAGATGTTTGGA 718 Query 706 CGTCTGTCTTTGCCTTTTTTGGCATATCCTTGTGACGAGCATCTTTCTTTGT-CGGTTAA 764 ||||| ||||||||||||||||||||||||||||| || ||||||||| ||| || |||| Sbjct 719 CGTCTTTCTTTGCCTTTTTTGGCATATCCTTGTGAAGATCATCTTTCTATGTTCG-TTAA 777 Query 765 AAATGATCGAATTTCGATATTGCACCAAACGTCA-CATTCATATTCTATAGAAATTTGGA 823 ||||||| ||||||||||||| || |||||| | ||| |||||||| | |||||||||| Sbjct 778 AAATGATAGAATTTCGATATTACATCAAACG-CGTCATCCATATTCTGTGGAAATTTGGA 836 Query 824 TGACGGGATCTGTGATAGACGGACAAGAATTGTCTTGGAGCAAATTCATGAGAGTTGATG 883 ||||||||||||||||||| |||||| || |||||||||||||| |||||||| |||||| Sbjct 837 TGACGGGATCTGTGATAGATGGACAAAAAGTGTCTTGGAGCAAACTCATGAGAATTGATG 896 Query 884 ATGAAAACTTTGATATTCGGTTCATAAATCCC-AATTTTTTCATTTATGATGAAGAGAAT 942 ||||||||||||||||||||||| | | || ||||| |||||| | || |||||||| Sbjct 897 CTGAAAACTTTGATATTCGGTTCA-ACCTGCCTAATTTCTTCATTCAGGACGAAGAGAAC 955 Query 943 AAAATGGTTGTATTTTCTGATGAAAAAAGCAGAA----AT-GAGTATAGAGTT-T--AT- 993 ||| | |||||||||| |||| ||||||| || || |||| || ||| | | Sbjct 956 AAAGTCGTTGTATTTTGTGAT-AAAAAAGAAGGGGTTCATAGAGTTTAC-GTTATTGAAG 1013 Query 994 -C-ATAAATATACGGAAGTTTATGTTGAAGAAGTCGAAGATTATAAAGAGCCTATCATCT 1051 | |||||| |||||||||||||| | || ||||||| |||||||||||||| |||||| Sbjct 1014 ACTATAAATGTACGGAAGTTTATGCTAAAAAAGTCGACCATTATAAAGAGCCTGTCATCT 1073 Query 1052 ACAATTATGTTCCCAGTTTAGTTCATATTCGCTAG 1086 | ||||||||||||||||| ||||||||||||||| Sbjct 1074 ATAATTATGTTCCCAGTTTGGTTCATATTCGCTAG 1108 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53212577700 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5