BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313041
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21490.1 | Symbols: | pseudogene, hypothetical protein | ch... 1247 0.0
> AT1G21490.1 | Symbols: | pseudogene, hypothetical protein |
chr1:7527079-7528202 REVERSE LENGTH=1124
Length=1124
Score = 1247 bits (675), Expect = 0.0
Identities = 975/1115 (87%), Gaps = 39/1115 (3%)
Strand=Plus/Plus
Query 1 ATGTTATC-AGATCTACCATTTGATTTGGTAGATGAAATACTTTCTAGGGTTCCAACAAA 59
|||||||| | ||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 4 ATGTTATCTA-ATCTACCATATGATTTGATAGATGAAATACTTTCTAGGGTTCCAACAAA 62
Query 60 ATTTCTCGTACGACTCCGATCTACTTGCAAACGATGGAATTCTCTATTTGACAATCATAG 119
|| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 63 ATCTCTCATACGACTCCGATCTACTTGCAAACGATGGAATTCTCTATTTGACGATCATGG 122
Query 120 ATTTTCCAAGAAACACTTTGGTAATGCCATCAAACAAAGTATGTTTATCTTATT-CTCTG 178
|||||| ||||||||||||| ||||||||| ||||||| ||||||||||||||| || ||
Sbjct 123 ATTTTCTAAGAAACACTTTGATAATGCCATGAAACAAAATATGTTTATCTTATTCCT-TG 181
Query 179 ATTTGAAATTTTTTACAATTAGTTGTGAACTCCAAAAACCCGATTG----TTACAACGTT 234
||||||| |||||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct 182 ATTTGAATTTTTTTACGATTAGTTGTGAACTCCAAAAACGGGATTGTACCTTACAACGTT 241
Query 235 AGTCGTTGTAAAATTAGTCTAAAAGAATGTATTTGCAAAGGAGAATGTAAAGTATTTGAA 294
| | |||||||| ||| ||||| |||||||||||| ||| | ||||| |||| ||||||
Sbjct 242 ACTAGTTGTAAACTTAATCTAACAGAATGTATTTGTAAAAAAAAATGTGAAGTGTTTGAA 301
Query 295 ATTCTTCACTGCGACGGTTTACTCTTAGGCCTCACAA-ACTGTTTTGAACTTATAGTCTG 353
||||||| ||||||||||||||||| |||||||||| | ||||||||| ||||||||||
Sbjct 302 GTTCTTCATTGCGACGGTTTACTCTTCGGCCTCACAAGA-TGTTTTGAAATTATAGTCTG 360
Query 354 GAACCCATGTTTAAAGCAAACAAAGTTGATTGAACCACACTTCCATAAACTACATACT-C 412
|||||||||||||||||||||||||| |||||||| |||| | |||||| ||| |||| |
Sbjct 361 GAACCCATGTTTAAAGCAAACAAAGTGGATTGAACGACACATACATAAAGTACGTACTAC 420
Query 413 -CA-ACTCCTGGATATGCTTTTGGGTGCGATAAAAAATACGGTGATCGTCGATACAAGAT 470
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TAATACTCCTGGATATGCTTTTGGGTGCGATAAAAAATACGGTGATCGTCGATACAAGAT 480
Query 471 CTTATTGTTTCTAGTATC----TGGATATTCCCGTAAATTTTGTAAGAAATATTTAGAGG 526
||| ||||||| || | | ||| ||||| ||||||| ||| ||||||||||||||
Sbjct 481 CTTGTTGTTTCCAGCAGCCAGCTGGC-ATTCCTGTAAATTCTGTTTGAAATATTTAGAGG 539
Query 527 TTGAAATATTTGATTTTACGTCTAACTCTTGGAGAGTTCTTAACGTTAAAATCGATTTTC 586
||||||||| ||| ||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 540 TTGAAATATATGACTTTACGTCTAACTCTTGGAGAGTTCTTAACGTTGAAATTGATTTTC 599
Query 587 TGCTTGTTTTTCCTACTCGTTGGGTATCCTTGGAA-GGAAATTCTTATTGGATTGGTGCA 645
| |||| |||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 600 TTCTTGAATTTCCTACTCGTTGGGTATCCTTG-AATGGGAATTCTTATTGGATTGGTGCA 658
Query 646 GATGAAAATACGCATGAAGGTTTCATTGTGAGATTTGATTTTTCAAATGAGATGTTCGGA 705
||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| |||
Sbjct 659 GATGAAAATACGCATGAAGGTGTCATTGTGACATTTGATTTTTCAGCTGAGATGTTTGGA 718
Query 706 CGTCTGTCTTTGCCTTTTTTGGCATATCCTTGTGACGAGCATCTTTCTTTGT-CGGTTAA 764
||||| ||||||||||||||||||||||||||||| || ||||||||| ||| || ||||
Sbjct 719 CGTCTTTCTTTGCCTTTTTTGGCATATCCTTGTGAAGATCATCTTTCTATGTTCG-TTAA 777
Query 765 AAATGATCGAATTTCGATATTGCACCAAACGTCA-CATTCATATTCTATAGAAATTTGGA 823
||||||| ||||||||||||| || |||||| | ||| |||||||| | ||||||||||
Sbjct 778 AAATGATAGAATTTCGATATTACATCAAACG-CGTCATCCATATTCTGTGGAAATTTGGA 836
Query 824 TGACGGGATCTGTGATAGACGGACAAGAATTGTCTTGGAGCAAATTCATGAGAGTTGATG 883
||||||||||||||||||| |||||| || |||||||||||||| |||||||| ||||||
Sbjct 837 TGACGGGATCTGTGATAGATGGACAAAAAGTGTCTTGGAGCAAACTCATGAGAATTGATG 896
Query 884 ATGAAAACTTTGATATTCGGTTCATAAATCCC-AATTTTTTCATTTATGATGAAGAGAAT 942
||||||||||||||||||||||| | | || ||||| |||||| | || ||||||||
Sbjct 897 CTGAAAACTTTGATATTCGGTTCA-ACCTGCCTAATTTCTTCATTCAGGACGAAGAGAAC 955
Query 943 AAAATGGTTGTATTTTCTGATGAAAAAAGCAGAA----AT-GAGTATAGAGTT-T--AT- 993
||| | |||||||||| |||| ||||||| || || |||| || ||| | |
Sbjct 956 AAAGTCGTTGTATTTTGTGAT-AAAAAAGAAGGGGTTCATAGAGTTTAC-GTTATTGAAG 1013
Query 994 -C-ATAAATATACGGAAGTTTATGTTGAAGAAGTCGAAGATTATAAAGAGCCTATCATCT 1051
| |||||| |||||||||||||| | || ||||||| |||||||||||||| ||||||
Sbjct 1014 ACTATAAATGTACGGAAGTTTATGCTAAAAAAGTCGACCATTATAAAGAGCCTGTCATCT 1073
Query 1052 ACAATTATGTTCCCAGTTTAGTTCATATTCGCTAG 1086
| ||||||||||||||||| |||||||||||||||
Sbjct 1074 ATAATTATGTTCCCAGTTTGGTTCATATTCGCTAG 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212577700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5