BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg313065

Length=699
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G21722.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   946    0.0  


> AT1G21722.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G78922.1); 
Has 47 Blast hits to 47 proteins in 13 species: Archae 
- 0; Bacteria - 0; Metazoa - 1; Fungi - 1; Plants - 42; Viruses 
- 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:7628456-7629252 
FORWARD LENGTH=702
Length=702

 Score =  946 bits (512),  Expect = 0.0
 Identities = 599/641 (93%), Gaps = 5/641 (1%)
 Strand=Plus/Plus

Query  1    ATGGGTAACGTGTTGGACTCATTCTTCACCGGTTTCTCACATTCTATCGGAAACTTCTTT  60
            |||||||||||  ||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct  1    ATGGGTAACGTAATGGACTCATTCTTCACCGGATTCTCTCATTCTATCGGAAACTTCTTT  60

Query  61   GGTTCTCCACTTGACTTTCTGTCTGGAAAATCTTGCAGTTCGGTTTGTCCATCACCGTGG  120
            |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct  61   GGTTCTCCACTTGACTTTTTATCTGGAAAATCTTGCAGTTCGGTTTGTCCATCACCGTGG  120

Query  121  GATTTCATATGCTTCGTTGAGAATTTCTGCGTGGCTAATCTTGC-AAAAGCTGCCTTAAT  179
            ||||||||||||| |||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct  121  GATTTCATATGCTACGTTGAGAATTTCTGCGTGGCTAATCTTGCGAAAA-CCGCCTTAAT  179

Query  180  CCTAATCTTATCCTACTTCTTTCTTTTCTTCATCTACATGTTATACAAAGTTGGGTTTTG  239
            |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||
Sbjct  180  CCTAATCTTATCCTACTTCTTTCTATTCTTCATCTACATGCTATACAAAGTTGGTTTTTG  239

Query  240  GCATTGTATCATCCACGGTTTCTGCAGACTCCTCTGGGCTTTAGTCTCTTGCTGGTTCTA  299
            ||||||||||||||||||||||| || |||||| |||| ||| |||||||| ||||||||
Sbjct  240  GCATTGTATCATCCACGGTTTCTTCAAACTCCTATGGGTTTTGGTCTCTTGTTGGTTCTA  299

Query  300  CATGCTTAGCTATTGCTGTAGTTTCTTCTGCTATGATCTGCTACACTCTAAACGTAGAAG  359
            ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  CATGCTTGGCTATTGTTGTAGTTTCTTCTGCTATGATCTGCTACACTCTAAACGTAGAAG  359

Query  360  AAGACGCAGACACCACAGATATATAGAGGAAGCTTatgatgataatagtgataacgatga  419
            ||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct  360  AAGACGCAGACACAACAGATATATAGAGGAAGATTATGATGATAATAGTGATGACGATGA  419

Query  420  tgatgatgatgGCGATTATGGGTCGTTCACATACCATAGATCGAGGCGAGAATGCAGAAG  479
            ||||| ||||   ||| ||||||||||||| ||||||||||||| |||||||||||||| 
Sbjct  420  TGATGTTGAT---GATGATGGGTCGTTCACGTACCATAGATCGAAGCGAGAATGCAGAAA  476

Query  480  AGAAGAGCGTCTTAGAAAGTCTTTGAGACCGAGGAGCCATCGTGTTAGAGTTGGTGTGAG  539
            |||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct  477  AGAAGAACGTCTTAGAAAGTCTCTGAGACCGAGGAACCATCGTGTTAGAGTTGGTGTGAG  536

Query  540  GAAAGACCATCGTTCTGACTCGGGTTTGAGCCAACATGCTGATGGAAGTAGTCCTATTCA  599
            |||||||||||||||||||||||||||||||||||||||||||||  ||||||| || ||
Sbjct  537  GAAAGACCATCGTTCTGACTCGGGTTTGAGCCAACATGCTGATGGTGGTAGTCCGATACA  596

Query  600  TGGTGTTAGAGTGAGCAGAGAGTCTAAGTTTACACGGAAGG  640
            ||||||||||||||| ||||||||||||||  |||||||||
Sbjct  597  TGGTGTTAGAGTGAGTAGAGAGTCTAAGTTCGCACGGAAGG  637



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33857815078


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5