BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg313074

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G21830.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...  1027    0.0  


> AT1G21830.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); 
BEST Arabidopsis thaliana protein match is: unknown protein 
(TAIR:AT1G44608.1); Has 49 Blast hits to 49 proteins 
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr1:7661118-7662608 REVERSE LENGTH=1019
Length=1019

 Score = 1027 bits (556),  Expect = 0.0
 Identities = 600/621 (97%), Gaps = 3/621 (0%)
 Strand=Plus/Plus

Query  1    ATGGATATGTACAAAGATGATAGCTCACCATACTGTTATTTCCATCCAAAGGAAGAGTAT  60
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  88   ATGGATATGTACAAAGATGATAGCTCACCATACTGTTATTTCCATCCAAAAGAAGAGTAT  147

Query  61   GTTGGAGTTTGTCCTCTCTGTTTGAACGAGAGGCTTCTTGTTTTAGCTTCAAAACAGAGA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  148  GTTGGAGTTTGTCCTCTCTGTTTGAACGAGAGGCTTCTTGTTTTAGCTTCAAAACAGAGA  207

Query  121  TCATCAAGAACCAAACACTCTTCCTCTTCACCAATCATCAGCCTCCCTAAGATCTTCGCC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  208  TCATCAAGAACCAAACACTCTTCCTCTTCACCAATCATCAGCCTCCCTAAGATATTCGCC  267

Query  181  TTGAGCTCTCTCCTCAGTCGCCTCGATCTCCGTCACCGGAAATTCCATCCCTCCTCCGAT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  268  TTGAGCTCTCTCCTCAGTCGCCTCGATCTCCGTCACCGGAAATTCCATCCCTCCTCCGAT  327

Query  241  CTTGACGTCTCCACAAGCCAAGAAGATTCTTTTATATCGATAAAATTCGAAAACGATGGA  300
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct  328  CTTGACGTCTCCACAAGCCAAGAAGATTCCTTTATATCGATAAAATTCGAAAACGACGGA  387

Query  301  AACGCGTCGTGGGAGAAGAAAGCAGTAGTGACGAAGGTTTGTGTAGACAACAAGAACAAC  360
            |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct  388  AACGCGTCGTGGGAAAAGAAAGCAGTAGTGACAAAGGTTTGTGTAGACAACAACAACAAC  447

Query  361  A-CA-A-CAAACTCAACATGCAAGAAGCAGCAATCTCCTATAACGAGCAATACCAGTATC  417
            | || | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  448  AACACAACAAACTCAACATGCAAGAAGCAGCAATCTCCTATAACGAGCAATACCAGTATC  507

Query  418  GTAGAGCACAATAGTGCCAAGTCATCGCTTAGGTGGCGCAAACGTATTGGGCATCTCTTC  477
            |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||
Sbjct  508  GTAGAGCACAATAGTGCCAAGTCATCGCTTAGATGGCGCAAGCGTATTGGTCATCTATTC  567

Query  478  CACGTCATCAAACTCAGATCAGGATCATCCACGTCGTCTTGCCACGTGGCACCATCCAAG  537
            |||||||||||||||| ||||||||| |||||||| |||||||| ||||||||||| |||
Sbjct  568  CACGTCATCAAACTCAAATCAGGATCGTCCACGTCTTCTTGCCATGTGGCACCATCTAAG  627

Query  538  GTCGAAGGAGCCAAAGTGAGGAAACAGGGTTGGATGGTGAGGACCTTAACCAGAAGAAAA  597
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  628  GTCGAAGGAACCAAAGTGAGGAAACAGGGTTGGATGGTGAGGACCTTAACCAGAAAAAAA  687

Query  598  TCCAGGAAAAGTAAAAGTTGA  618
            |||||||||||||||||||||
Sbjct  688  TCCAGGAAAAGTAAAAGTTGA  708



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29788849171


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5