BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313077
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21850.1 | Symbols: sks8 | SKU5 similar 8 | chr1:7667803-767... 2604 0.0
AT1G21860.1 | Symbols: sks7 | SKU5 similar 7 | chr1:7671028-767... 1914 0.0
AT1G76160.1 | Symbols: sks5 | SKU5 similar 5 | chr1:28577942-28... 1022 0.0
> AT1G21850.1 | Symbols: sks8 | SKU5 similar 8 | chr1:7667803-7670530
REVERSE LENGTH=1656
Length=1656
Score = 2604 bits (1410), Expect = 0.0
Identities = 1551/1620 (96%), Gaps = 6/1620 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGTCAAAAGCGTGAACACCACGGCGATGATACTTGGTCTATTGTTTCTAATCAGC 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGAGGTCAAAAGCGTGAACACCACGGCGATGATACTTGGTCTATTTTTTCTAATCAGC 60
Query 61 TTCGTCGCTGCGGAAGATCCGTATAGATTCTTCGAATGGCACGTAACATACGGCAACATA 120
||||||||||||||||||||||||| ||||||||||||||||||||| || || ||||||
Sbjct 61 TTCGTCGCTGCGGAAGATCCGTATAAATTCTTCGAATGGCACGTAACTTATGGTAACATA 120
Query 121 TCTCCTCTCAACGTTGCACAACAGGGTATATTGATCAATGGGAAGTTCCCAGGACCGGAT 180
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTCCGCTCAAGGTTGCACAACAGGGTATATTGATCAATGGGAAGTTCCCAGGACCGGAC 180
Query 181 ATCGTCTCTGTTACCAATGATAATCTCATCATTAACGTATTTAACCATCTCGACGAATCT 240
|||| | |||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 181 ATCGCCGCTGTTACCAATGATAATCTCATCATTAACGTATTCAACCATCTCGACGAACCT 240
Query 241 TTCCTTATATCATGGAGCGGGATTCGAAATTGGAGGAATTCATACCAGGACGGAGTGTAC 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 TTCCTTATATCATGGAGCGGGATTCGAAACTGGAGGAATTCATACCAGGACGGAGTGTAC 300
Query 301 GGAACGACGTGCCCAATCCCGCCGGGAAAAAACTACACCTACGTTCTTCAGGTTAAAGAT 360
|| |||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 301 GGGACGACGTGTCCAATCCCGCCGGGGAAAAACTACACCTACGCTCTTCAGGTTAAAGAT 360
Query 361 CAGATTGGAAGTTTCTACTACTTCCCCTCTCTCGGCTTTCACAAAGCCGCCGGTGGATTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAGATTGGAAGTTTCTACTACTTCCCCTCTCTCGGCTTTCACAAAGCCGCCGGTGGATTT 420
Query 421 GGAGCTATTCGTATCTCCAGCCGCCCCAAAATCCCCGTTCCATTCCCAGCTCCCGCTGAT 480
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
Sbjct 421 GGAGCTATTCGTATCTCCAGCCGCCCCAGAATCCCCGTTCCATTCCCAGCCCCCGCTGGT 480
Query 481 GATTACACCGTTCTCATCGGTGACTGGTACAAAACCAACCACAAGGACTTGAGAGCACAA 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GATTACACCGTTCTCATCGGTGACTGGTACAAAACCAACCATAAGGACTTGAGAGCACAA 540
Query 541 CTCGATAATGGTGGAAAGCTTCCTTTACCAGATGGAATTCTCATCAATGGTCGCGGTAGT 600
||||||||||||||||||||||| || || |||||||||||||||||||| |||||||||
Sbjct 541 CTCGATAATGGTGGAAAGCTTCCATTCCCGGATGGAATTCTCATCAATGGGCGCGGTAGT 600
Query 601 GGCGCCACCCTCAACATTGAACCAGGTAAGACTTATAGACTGAGGATATCAAATGTTGGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGCGCCACCCTCAACATTGAACCAGGTAAGACTTATAGACTGAGGATATCAAATGTTGGA 660
Query 661 TTGCAAAACTCTCTCAACTTCCAAATCCAAAACCACATGATGAAGTTAGTTGAGGTCGAA 720
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 661 TTGCAAAACTCTCTCAACTTCCGAATCCAAAACCACAAGATGAAGTTAGTTGAGGTCGAA 720
Query 721 GGGACACACACTATTCAGACTCCATTCTCTACGCTTGATGTCCACGTCGGTCAATCTTAC 780
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 721 GGGACACACACTATTCAGACTCCATTCTCTTCGCTTGATGTTCACGTCGGTCAATCTTAC 780
Query 781 TCGGTCCTTATAACAGCTGACCAGCCTGCAAAAGATTATTATATTGTGGTCTCTAGTAGG 840
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 781 TCGGTCCTTATAACAGCTGACCAGCCTGCAAAAGATTATTACATTGTGGTCTCTAGTAGG 840
Query 841 TTTACCTCCAAGATCCTTATCACCACCGGTGTTCTTCATTACAGTAATTCTGCTGGACCT 900
|||||||| ||||||||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 841 TTTACCTCGAAGATCCTTATTACCGCTGGTGTTCTTCATTACAGTAATTCTGCTGGACCT 900
Query 901 GTTTCTGGACCTATTCCAGATGGACCAACTCAGTTGC-CATGGTCTTTTGACCAAGCACG 959
|||||||||||||||||||| | ||||| |||||||| | ||||||||||||||||||||
Sbjct 901 GTTTCTGGACCTATTCCAGAAGCACCAATTCAGTTGCGC-TGGTCTTTTGACCAAGCACG 959
Query 960 AGCCATCAAGACCAACCTTACAGCGAGTGGACCAAGGCCAAACCCTCAAGGTTCATACCA 1019
||||||||||||||||||| ||||||||||||| ||||||||||| |||||| |||||||
Sbjct 960 AGCCATCAAGACCAACCTTGCAGCGAGTGGACCTAGGCCAAACCCACAAGGTACATACCA 1019
Query 1020 CTATGGCAAGATAAATA-TCACTCGAACAATCAGACTTGCTAACTCTGCTGGAAATATCA 1078
||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1020 CTATGGCAAGATAAA-AGTCACTCGAACAATCAAACTTGCTAGCTCTGCTGGAAATATCA 1078
Query 1079 AAGGCAAGCAACGATACGCAGTGAATAGTGCATCATTTTACCCAGCAGACACCCCTTTGA 1138
| ||||||||||||||||| ||||||||||||||||| |||||| ||||||| |||||||
Sbjct 1079 ATGGCAAGCAACGATACGCGGTGAATAGTGCATCATTCTACCCAACAGACACACCTTTGA 1138
Query 1139 AACTAGCGGACTACTTCAAAATTGCCGGTGTATACAATCCTGGAAGCATACCTGATCAGT 1198
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1139 AACTAGCGGACTACTTCAAAATTGCCGGTGTATACAACCCTGGAAGCATACCTGATCAGC 1198
Query 1199 CCACATATGGAGCAATATTCCCTGTTACATCAGTAATGCAAACTGATTACAAAACTTTTG 1258
||||| |||||||||||| |||||| ||||| || |||||||||||||||||| ||||||
Sbjct 1199 CCACACATGGAGCAATATACCCTGTCACATCTGTTATGCAAACTGATTACAAAGCTTTTG 1258
Query 1259 TGGAGATTGTTTTCGAGAACTGGGAAGATATTGTCCAGACCTGGCACCTTGACGGTTACT 1318
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1259 TGGAGATTGTTTTCGAGAATTGGGAAGATATTGTCCAGACCTGGCACCTCGACGGTTACT 1318
Query 1319 CTTTCTACGTGGTTGGAATGGAACTTGGGAAGTGGAGTGCTGCCAGTAGAAAAGTCTACA 1378
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CTTTCTTCGTGGTTGGGATGGAACTTGGGAAGTGGAGTGCTGCCAGTAGAAAAGTCTACA 1378
Query 1379 ATCTAAACGACGCAGTCTCACGGTGCACTGTTCAGGTGTATCCCAA-ATCATGGACTGCC 1437
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1379 ATCTAAACGACGCAGTCTCACGGTGCACTGTTCAGGTGTATCC-AAGATCATGGACTGCC 1437
Query 1438 ATATACGTATCACTGGACAATGTAGGAATGTGGAACCTAAGATCAGAGTTATGGGAAAGA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 ATATACGTATCACTGGACAATGTAGGAATGTGGAACCTAAGATCAGAGTTATGGGAAAGA 1497
Query 1498 CAATACCTGGGACAACAGTTCTACATGCGTGTTTACACAACCTCCACTTCCCTCAGAGAT 1557
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1498 CAATACCTGGGACAACAGTTTTACATGCGTGTTTACACACCCTCCACTTCCCTCAGAGAT 1557
Query 1558 GAATACTTGATCCCGAAGAACGCTCTTCTCTGCGGCAGGGCCACTGGCCACCACACCACG 1617
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GAGTACTTGATCCCGAAGAACGCTCTTCTCTGCGGCAGGGCCACTGGCCACCACACCACG 1617
> AT1G21860.1 | Symbols: sks7 | SKU5 similar 7 | chr1:7671028-7674215
REVERSE LENGTH=1617
Length=1617
Score = 1914 bits (1036), Expect = 0.0
Identities = 1425/1613 (88%), Gaps = 26/1613 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGTCAAAAGCGTGAACACCACGGCGATGAT-ACTTGGTCTATTGTTTCTAATCAG 59
||| ||||||||||| ||||||| | ||||||||| || ||||||||||||||||||
Sbjct 1 ATGAAGGTCAAAAGCATGAACACTAGGGCGATGATAAC-CACTCTATTGTTTCTAATCAG 59
Query 60 CTTCGTCGC-T-GCGGAAGATCCGTATAGATTCTTCGAATGGCACGTAACATACGGCAAC 117
| ||| | | | || |||||||| || ||||||||||||||||||||||| || ||||||
Sbjct 60 CCTCG-C-CTTCGCTGAAGATCCATACAGATTCTTCGAATGGCACGTAACCTATGGCAAC 117
Query 118 ATATCTCCTCTCAACGTTGCACAACAGGGTATATTGATCAATGGGAAGTTCCCAGGACCG 177
||||||||||| ||||| ||||||||||||||||| || |||||||| ||||||||
Sbjct 118 ATATCTCCTCTTGGTGTTGCGCAACAGGGTATATTGATTAACGGGAAGTTTCCAGGACCA 177
Query 178 GATATCGTCTCTGTTACCAATGATAATCTCATCATTAACGTATTTAACCATCTCGACGAA 237
|| ||| ||||| |||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 178 GACATCATCTCTATTACCAATGACAATCTCATCATTAACGTATTCAACCATCTCGACGAA 237
Query 238 TCTTTCCTTATATCATGGAGCGGGATTCGAAATTGGAGGAATTCATACCAGGACGGAGTG 297
|||||||| | || |||| ||||||||||||||||| ||||| | |||||| |||||
Sbjct 238 CCTTTCCTTTTGTCTTGGAACGGGATTCGAAATTGGAAAAATTCGTTCCAGGATGGAGTC 297
Query 298 TACGGAACGACGTGCCCAATCCCGCCGGGAAAAAACTACACCTACGTTCTTCAGGTTAAA 357
|||||||||| |||||||||||| ||||| || |||||||| |||| |||||||||||||
Sbjct 298 TACGGAACGATGTGCCCAATCCCACCGGGGAAGAACTACACTTACGCTCTTCAGGTTAAA 357
Query 358 GATCAGATTGGAAGTTTCTACTACTTCCCCTCTCTCGGCTTTCACAAAGCCGCCGGTGGA 417
|||||||| |||||||||||||||||||||||||| || ||||||||||| ||||| |||
Sbjct 358 GATCAGATCGGAAGTTTCTACTACTTCCCCTCTCTAGGATTTCACAAAGCTGCCGGCGGA 417
Query 418 TTTGGAGCTATTCGTATCTCCAGCCGCCCCA-AAATCCCCGTTCCATT-CCCAGCTCCCG 475
|| |||| ||| |||||||||||||| || |||||||| || || |||| |||| |
Sbjct 418 TTCGGAGGTATCCGTATCTCCAGCCG-TGCATTGATCCCCGTCCCCTTCCCCA-CTCCGG 475
Query 476 CTGATGATTACAC-CGTTCTCA-TCGGTGACTGGTACAAAACCAACCACAAGGACTTG-A 532
| ||||||||||| | | || | | || |||||||||||||||||||||||||||||| |
Sbjct 476 CCGATGATTACACTC-TCCT-AGTAGGCGACTGGTACAAAACCAACCACAAGGACTTGAA 533
Query 533 GAGCACAACTCGATAATGGTGGAAAGCTTCCTTTACCAGATGGAATTCTCATCAATGGTC 592
| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 534 G-GCACAACTCGATAATGGTGGAAAACTTCCTTTACCAGATGGAATTCTCATAAATGGTC 592
Query 593 GCGGTAGTGGCGCCACCCTCAACATTGAACCAGGTAAGACTTATAGACTGAGGATATCAA 652
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GTAGTAGTGGCGCCACTCTCAACATTGAACCAGGTAAGACTTATAGACTGAGGATATCAA 652
Query 653 ATGTTGGATTGCAAAACTCTCTCAACTTCCAAATCCAAAACCACATGATGAAGTTAGTTG 712
|||||||||| || ||||| |||||||||| |||||||||||| | ||||||||| ||||
Sbjct 653 ATGTTGGATTACAGAACTCCCTCAACTTCCGAATCCAAAACCATACGATGAAGTTGGTTG 712
Query 713 AGGTCGAAGGGACACACACTATTCAGACTCCATTCTCTACGCTTGATGTCCACGTCGGTC 772
|||||||||||| | |||||||||||| || |||||| |||||||||| ||||| ||||
Sbjct 713 AGGTCGAAGGGAGATACACTATTCAGAATCTTTTCTCTTCGCTTGATGTTCACGTTGGTC 772
Query 773 AATCTTACTCGGTCCTTATAACAGCTGACCAGCCTGCAAAAGATTATTATATTGTGGTCT 832
||||||||||||||||||||||||| || |||||||||||||||||||| |||| ||||
Sbjct 773 AATCTTACTCGGTCCTTATAACAGCCGATCAGCCTGCAAAAGATTATTACGTTGTCGTCT 832
Query 833 CTAGTAGGTTTACCTCCAAGATCCTTA-TCACCACCGGTGTTCTTCATTACAGTAATTCT 891
||||||||||||| || ||||| || | | || || || |||||||||||||||||||||
Sbjct 833 CTAGTAGGTTTACATCAAAGATACTCACT-ACTACTGGAGTTCTTCATTACAGTAATTCT 891
Query 892 GCTGGACCTGTTTCTGGACCTATTCCAGATGGACCAACTCAGTT--GCCATGGTCTTTTG 949
| || |||||||||||||||||||||||||||||||| | |||| || |||||||||
Sbjct 892 GTTGCACCTGTTTCTGGACCTATTCCAGATGGACCAATTAAGTTAAGC--TGGTCTTTTA 949
Query 950 ACCAAGCACGAGCCATCAAGACCAACCTTACAGCGAGTGGACCAAGGCCAAACCCTCAAG 1009
||||||| ||||| |||| ||||||||||||||| || ||||||||||||||||| ||||
Sbjct 950 ACCAAGCTCGAGCTATCAGGACCAACCTTACAGCAAGCGGACCAAGGCCAAACCCACAAG 1009
Query 1010 GTTCATACCACTATGGCAAGATAAATATCACTCGAACAATCAGACTTGCTAACTCTGCT- 1068
||||||||| |||||| |||||| ||||| ||||| ||||||||||||||| | ||
Sbjct 1010 GTTCATACCGCTATGGTGTGATAAACATCACCCGAACGATCAGACTTGCTAACAAT-CTT 1068
Query 1069 GGAAATATCAAAGGCAAGCAACGATACGCAGTGAATAGTGCATCATTTTACCCAGCAGAC 1128
||| |||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1069 GGACATATTGAAGGCAAGCAACGATACGCCGTGAACAGTGCATCATTTTACCCAGCAGAC 1128
Query 1129 ACCCCTTTGAAACTAGCGGACTACTTCAAAATTGCCGGTGTATACAATCCTGGAAGCATA 1188
|||||||||||||||| ||| ||||||||||||| |||||||||||| |||||||| |||
Sbjct 1129 ACCCCTTTGAAACTAGTGGATTACTTCAAAATTGACGGTGTATACAAGCCTGGAAGTATA 1188
Query 1189 CCTGATCAGTCCACATATGGAGCAATATTCCCTGTTACATCAGTAATGCAAACTGATTAC 1248
|||| ||| ||||| ||||||||||||||||| ||||| ||||||||| |||||| |
Sbjct 1189 TCTGACCAGCCCACAAATGGAGCAATATTCCCTACCACATCTGTAATGCAAGCTGATTTC 1248
Query 1249 AAAACTTTTGTGGA-GATTGTTTTCGAGAACTGGGAAGATATTGTCCAGACCTGGCACCT 1307
| | | |||||||| | || |||||||||| | ||||||||||||||||| |||||||||
Sbjct 1249 AGAGCCTTTGTGGAAG-TTATTTTCGAGAATTCGGAAGATATTGTCCAGAGCTGGCACCT 1307
Query 1308 TGACGGTTACTCTTTCTACGTGGTTGGAATGGAACTTGGGAAGTGGAGTGCTGCCAGTAG 1367
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1308 CGACGGTTACTCTTTCTACGTTGTTGGAATGGAACTTGGGAAGTGGAGTCCTGCCAGTAG 1367
Query 1368 AAAAGTCTACAATCTAAACGACGCAGTCTCACGGTGCACTGTTCAGGTGTATCCCAAATC 1427
||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| | |||
Sbjct 1368 AAAAGTCTACAATCTAAACGACGCAATCTTACGGTGCACTATTCAGGTGTATCCGAGATC 1427
Query 1428 ATGGACTGCCATATACGTATCACTGGACAATGTAGGAATGTGGAACCTAAGATCAGAGTT 1487
|||||||||||||||| || ||||||||||||||||||||||||| | ||||||||| |
Sbjct 1428 ATGGACTGCCATATACATAGCACTGGACAATGTAGGAATGTGGAATATGAGATCAGAGAT 1487
Query 1488 ATGGGAAAGACAATACCTGGGACAACAGTTCTACATGCGTGTTTACACAACCTCCACTTC 1547
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1488 ATGGGAAAGACAATACTTGGGACAACAGTTCTACATGCGTGTTTACACAACCTCTACTTC 1547
Query 1548 CCTCAGAGATGAATACTTGATCCCGAAGAACGCTCTTCTCTGCGGCAGGGCCA 1600
||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 1548 TCTCAGAGATGAATACTTGATCCCTAAGAACGCTCTTCTGTGTGGCAGGGCCA 1600
> AT1G76160.1 | Symbols: sks5 | SKU5 similar 5 | chr1:28577942-28581133
REVERSE LENGTH=2008
Length=2008
Score = 1022 bits (553), Expect = 0.0
Identities = 1243/1573 (79%), Gaps = 59/1573 (4%)
Strand=Plus/Plus
Query 63 CGTCGCTGCGGAAGATCCGTATAGATTCTTCGAATGGCACGTAACATACGGCAACATAT- 121
|||| | || ||||||||||| |||||||| |||||| || |||| |||||| | ||||
Sbjct 173 CGTCACGGCTGAAGATCCGTACAGATTCTTTGAATGGAACATAACTTACGGCGATATATA 232
Query 122 CTCCTCTCAACGTT-GCACAACAGGGTATATTGATCAATGGGAAGTTCCCAGGACCGGAT 180
| || ||| ||| || ||||||||||| |||||||| ||| ||| || ||||||||
Sbjct 233 C-CCACTCGGTGTTCGC-CAACAGGGTATTTTGATCAACGGGGCGTTTCCGGGACCGGAC 290
Query 181 A-TCGTCTCTGTTACCAATGATAATCTCATCATTAACGTATTTAACCA-TCTCGACGAAT 238
| || | || ||||| ||||| ||||||||||| ||||| | || | |||||||||
Sbjct 291 ATTCAT-TCGGTTACTAATGACAATCTCATCATCAACGTCTACAA-TAGCCTCGACGAAC 348
Query 239 CTTTCCTTATATCATGGAGCGGGATTCGAA-ATTGGAGGAATTCATACCAGGACGGAGTG 297
|||||||| | ||||||| || |||| || | ||||||| || | | || ||||||
Sbjct 349 CTTTCCTTCTTTCATGGAATGGAATTC-AACAGAGGAGGAACTCTTTCGTTGATGGAGTG 407
Query 298 TACGGAACGACGTGCCCAATCCCGCCGGGAAAAAACTACACCTACGTTCTTCAGGTTAAA 357
|| |||||||| ||||||||||||||||| || |||||||| ||| |||||||| | ||
Sbjct 408 TATGGAACGACATGCCCAATCCCGCCGGGGAAGAACTACACTTACATTCTTCAGATGAAG 467
Query 358 GATCAGATTGGAAGTTTCTACTACTTCCCCTCTCTCGGCTTTCACAAAGCCGCCGGTGGA 417
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 468 GATCAGATCGGAAGTTTTTACTACTTCCCTTCTCTCGGCTTTCACAAAGCCGCCGGTGGA 527
Query 418 TTTGGAG-CTATTCGTATC-TCCAGCCGCCCCAAAATCCCCGTTCCATTCCCAGCTCCCG 475
||||| | | ||||||||| || || || || | |||||| || || ||||| | |||||
Sbjct 528 TTTGGTGGC-ATTCGTATCCTC-AGTCGTCCTAGAATCCCGGTCCCTTTCCCTGATCCCG 585
Query 476 CTG-ATGATTAC-ACCGTTCTCATCGGTGACTGGTACAAAACCAACCACAAGGACTTGAG 533
| | | ||| || || || || ||||| |||||||||||| | ||||||| ||| |||||
Sbjct 586 CCGGA-GAT-ACCACTGTCCTTATCGGAGACTGGTACAAAGCAAACCACACGGATTTGAG 643
Query 534 AGCACAACTCGATAATGGTG-GAAAGCTTCCTTTACCAGATGGAATTCTCATCAATGGTC 592
|||||| || ||||||||| ||| ||||||||||||||| || || |||||||||||||
Sbjct 644 AGCACAGCTTGATAATGGTAAGAA-GCTTCCTTTACCAGACGGCATCCTCATCAATGGTC 702
Query 593 GCGGTAGTGGCGCCACCCTCAACATTGAACCAGGTAAGACTTATAGACTGAGGATATCAA 652
| ||||| || || || || |||||| ||||||||| || || | || ||||| |
Sbjct 703 GTTCAAGTGGTGCAACTCTTAATGTTGAACAAGGTAAGACATACAGGTTTAGAATATCCA 762
Query 653 ATGTTGGATTGCAAAACTCTCTCAACTTCCAAATCCAAAACCACATGATGAA-GTTAGTT 711
|||| || || ||| ||||||||||||||| || ||| |||| | |||||| || ||
Sbjct 763 ATGTAGGGTTACAAGACTCTCTCAACTTCCGCATTCAAGACCATAAGATGAAAGTG-GTG 821
Query 712 GAGGTCGAAGGGACACACACTATTCAGACTCCATTCTCTACGCTTGATGTCCACGTCGGT 771
|| |||||||| ||||||||| |||||||| | |||||| | || ||||| || || ||
Sbjct 822 GAAGTCGAAGGAACACACACTCTTCAGACTACTTTCTCTTCACTAGATGTTCATGTTGGA 881
Query 772 CAATCTTACTCGGTCCTTATAACAGCTGACCAGCCTGCAAAAGATTATTATATTGTGGTC 831
||||||||||| |||||| |||| || |||||| || || |||||||| | || |||
Sbjct 882 CAATCTTACTCAGTCCTTGTAACCGCGGACCAGACTCCACGGGATTATTACGTGGTCGTC 941
Query 832 TCTAGTAGGTTTACCTCCAA-GATCCTTA-TCACCACCGGTGTTCTTC--ATTACAGTAA 887
||| | |||||||||| || | |||||| | ||||| ||| || ||| || |||||||
Sbjct 942 TCTTCTCGGTTTACCTCAAATG-TCCTTACT-ACCACGGGTATT-TTCCGAT-ACAGTAA 997
Query 888 TTCTGCTGGACCTGTTTCTGGACCTATTCCAGATGGACCAAC--T-CAGTT-GCCATGGT 943
||||||||| |||||||||||||||||| | |||||| || | || | | | ||||
Sbjct 998 TTCTGCTGGTGGTGTTTCTGGACCTATTCCTGGTGGACCTACCATTCAAATCGAC-TGGT 1056
Query 944 CTTTTGA-CCAAGCACGAGCCATCAAGACCAACCTTACAGCGAGTGGACCAAGGCCAAAC 1002
| || || ||| || |||||||||| ||| |||||| ||||||| ||||||||||||||
Sbjct 1057 CCTT-GAACCAGGCTCGAGCCATCAGGACTAACCTTTCAGCGAGCGGACCAAGGCCAAAT 1115
Query 1003 CCTCAAGGTTCATACCACTATGGCAAGATAAATA-TCACTCGAACAATCAGACTTGCTAA 1061
|| ||||| || |||||||| || | |||||| | | || |||| |||||||||||||
Sbjct 1116 CCACAAGGATCGTACCACTACGGTATGATAAACACT-ACAAGAACGATCAGACTTGCTAG 1174
Query 1062 CTCTGCTGGAAATATCAAAGGCAAGCAACGATACGCAGTGAATAGTG-CATCATTTTA-C 1119
||||||||| | | | || |||||||||||||| ||||| |||| | ||||| | |
Sbjct 1175 CTCTGCTGGTCAGGTTGATGGGAAGCAACGATACGCTGTGAACAGTGTC-TCATTCAAAC 1233
Query 1120 CCAGCAGACACCCCTTTGAAACTAGCGGACTACTTCAAAATTGCCGGTGTATACA-ATCC 1178
|| |||||||| ||| ||||| | |||||||||||||| |||| |||||| |||| |
Sbjct 1234 CC-GCAGACACTCCTCTGAAAATCGCGGACTACTTCAAGATTGACGGTGTTTACAGAAG- 1291
Query 1179 TGGAAGCATACC-TGATCAGTCCACATA-TGGAGCAATATTCC-CTGTTACATCAGTAAT 1235
||||||||||| | | || |||| | ||||| ||||| || | | ||||| || ||
Sbjct 1292 TGGAAGCATACAGT-ACCAACCCAC-TGGTGGAGGAATATACCTC-GACACATCTGTTAT 1348
Query 1236 GCAAACTGATTACAAAACTTTTGTGGAGATTGTTTTCGAGAACTGGGAAGATATTGTCCA 1295
|||| |||||||| ||| |||||||||||| ||||||| || | || |||||||||||
Sbjct 1349 GCAAGTTGATTACAGAACCTTTGTGGAGATTATTTTCGAAAATTCTGAGGATATTGTCCA 1408
Query 1296 GACCTGGCACCTTGACGGTTACTCTTTCTACGTGGTTGGAATGGAACTTGGGA-AGTGGA 1354
|| |||||| ||||| ||||||||||||| || ||||||||||| ||| | ||||||
Sbjct 1409 GAGCTGGCATCTTGATGGTTACTCTTTCTGGGTTGTTGGAATGGATGGTGG-ACAGTGGA 1467
Query 1355 GTGCTGCCAGTAGAAAAGTCTACAATCTAAACGACGCAGTCTCACGGTGCACTGTTCAGG 1414
|| | | ||||| || | || || ||| ||| |||||| | || ||||| |||||||
Sbjct 1468 GTCCAGATAGTAGGAACGAGTATAACCTACGCGATGCAGTCGCTCGCTGCACCGTTCAGG 1527
Query 1415 TGTATCCCAAA-TCATGGACTGCCATATACG-TATCACTGGACAATGTAGGAATGTGGAA 1472
| || ||||| |||||||| || |||| | || |||| ||||| ||||||||||||||
Sbjct 1528 TATA-CCCAAGCTCATGGACGGCTATATT-GATAGCACTCGACAACGTAGGAATGTGGAA 1585
Query 1473 CCTAAGATCAGAGTTATGGGAAAGACAATACCTGGGACAACAGTTCTACATGCGTGTTTA 1532
|||||||| ||||| |||| || |||||| | |||||||| || || | ||||| ||
Sbjct 1586 TCTAAGATCCGAGTTCTGGGCGAGGCAATACTTAGGACAACAATTGTATTTACGTGTGTA 1645
Query 1533 CACAACCTCCACTTCCCTCAGAGATGAATACTTGA-TCCCGAAGAACGCTCTTCTCTGCG 1591
|||| |||| ||||| |||||||||||||| | | |||| |||||||||||||||||||
Sbjct 1646 CACACCCTCAACTTCTCTCAGAGATGAATA-TCCAATCCCCAAGAACGCTCTTCTCTGCG 1704
Query 1592 GCAGGGCCACTGG 1604
| || |||| |||
Sbjct 1705 GGAGAGCCAGTGG 1717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80622075270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5