BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313079
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21870.1 | Symbols: GONST5 | golgi nucleotide sugar transpor... 1591 0.0
AT1G77610.1 | Symbols: | EamA-like transporter family protein ... 1127 0.0
> AT1G21870.1 | Symbols: GONST5 | golgi nucleotide sugar transporter
5 | chr1:7678208-7679697 FORWARD LENGTH=1026
Length=1026
Score = 1591 bits (861), Expect = 0.0
Identities = 973/1028 (95%), Gaps = 4/1028 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAAGGAAGTCTGTGGCATCAATGGAGTATGTTCAGATCTCTGTTATCGATTCTT 60
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGAAGGAAGTCTGTGGCGTCAATGGACTATGTTCAGATCTCTGTTATCGATTCTT 60
Query 61 CAATGGTGGGGTTTTAATGTTACTGTTATCATCATGAACAAATGGATCTTTCAGAAACTG 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAATGGTGGGGTTTTAACGTTACTGTTATCATCATGAACAAATGGATCTTTCAGAAACTG 120
Query 121 GATTTCAAATTTCCATTGTCAGTTTCATGTGTTCATTTCATATGTTCATCGATTGGAGCT 180
|||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 GATTTCAAGTTTCCATTATCAGTTTCATGTGTTCATTTCATATGTTCGTCGATTGGAGCA 180
Query 181 TACATTGTGATCAAAGTCTTGAAGATTAAACCTTTGATTGTGGTTGATCCTGAAGATCGT 240
||||||||||| |||||||| ||| ||||||||||||||||||||||||| |||||| |
Sbjct 181 TACATTGTGATTAAAGTCTTAAAGCTTAAACCTTTGATTGTGGTTGATCCAGAAGATAGG 240
Query 241 TGGAGGAGGATTTTTCCAATGTCATTTGTCTTTTGTATCAACATTGTGTTGGGGAACATC 300
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 241 TGGAGGAGGATTTTTCCAATGTCATTTGTGTTCTGTATCAACATTGTGTTGGGGAATATT 300
Query 301 AGTCTTAGATACATTCCTGTCTCTTTTATGCAGACTATCAAATCTTTTACTCCGGCAACA 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 301 AGTCTTAGATACATTCCTGTCTCTTTTATGCAGACTATCAAATCTTTAACTCCTGCAACA 360
Query 361 ACAGTGGTGTTACAGTGGTTGGTATGGAGGAAATATTTTGAATGGCGTATTTGGGCGTCG 420
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 ACAGTTGTGTTACAGTGGTTGGTATGGAGGAAATATTTTGATTGGCGTATTTGGGCGTCA 420
Query 421 TTGGTGCCTATTGTTGGAGGGATTCTTCTGACTTCTATTACAGAACTTAGCTTTAATGTG 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 TTGGTGCCTATTGTTGGAGGGATTCTTCTTACTTCTATTACAGAACTTAGCTTTAATGTG 480
Query 481 TTTGGATTCTGTGCTGCTTTGTTTGGATGTTTAGCTACCTCTACAAAGACCATTCTTGCG 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTGGATTCTGTGCTGCTTTGTTTGGATGTTTAGCTACCTCTACAAAGACCATTCTTGCA 540
Query 541 GAATCTCTTCTTCATGGATACAAATTTGACAGCATAAACACGGTATACTATATGGCGCCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAATCTCTTCTTCATGGATACAAATTTGACAGCATAAACACGGTATACTATATGGCGCCT 600
Query 601 TTTGCGACCATGATTCTCGGATTACCAGCATTTCTACTTGAA-GGCAATGGAATTTTGAA 659
|| ||||||||||||||||| ||||| |||||| |||| ||| || |||||||||||| |
Sbjct 601 TTCGCGACCATGATTCTCGGGTTACCTGCATTTTTACTAGAAAGG-AATGGAATTTTGGA 659
Query 660 TTGGTTTGAAGCACACCCGTCTCCATGGTCGGCTCTCATCATTATTTTCAGCTCGGGTGT 719
||||||||||||||| || |||||||||||||||||||| ||| |||||| ||| |||||
Sbjct 660 TTGGTTTGAAGCACATCCATCTCCATGGTCGGCTCTCATAATTCTTTTCAACTCAGGTGT 719
Query 720 TCTAGCTTTCTGTCTTAACTTCTCCATCTTCTATGTCATTCACTCCACAACGGCAGTCAC 779
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 720 TCTAGCTTTCTGTCTTAACTTCTCCATCTTCTATGTCATTCAATCCACAACAGCAGTCAC 779
Query 780 ATTCAATGTAGCTGGAAACCTTAAGGTTGCAGTAGCTGTGTTGGTATCATGGATGATATT 839
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 780 ATTCAATGTAGCTGGAAACCTTAAGGTTGCAGTAGCTGTGTTTGTTTCATGGATGATATT 839
Query 840 -CAAAAACCCGATATCACCGATGAATGCTGTTGGATGCGGAATCACACTTGTGGGCTGCA 898
| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 840 TCGAAA-CCCGATATCACCGATGAATGCTGTTGGCTGCGGAATCACACTTGTGGGCTGCA 898
Query 899 CCTTTTATGGTTATGTAAGGCACATGCTTTCTCAGCAACAACCAGGAACTCCCAGGACTC 958
||||||| || |||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct 899 CCTTTTACGGATATGTAAGACACATGCTTTCTCAGCAACAACCCGGAACTCCTAGGACTC 958
Query 959 CTCGTAACCCAAGGAACAAGATGGAACTGATTCCTCTTGTTAATGATAAACTAGAGAGTA 1018
|||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 959 CTCGTACCCCAAGGAACAAGATGGAACTGATCCCTCTTGTTAATGATAAACTCGAGAGTA 1018
Query 1019 AAGTTTGA 1026
|| |||||
Sbjct 1019 AAATTTGA 1026
> AT1G77610.1 | Symbols: | EamA-like transporter family protein
| chr1:29165210-29167773 FORWARD LENGTH=1577
Length=1577
Score = 1127 bits (610), Expect = 0.0
Identities = 880/1009 (87%), Gaps = 23/1009 (2%)
Strand=Plus/Plus
Query 31 AGTATGTTCAGATCTCTGTTATCGATTCTTCAATGGTGGGGTTTTAATGTTACTGTTATC 90
||||||||||||||||| ||| |||||||||| ||||||||||| |||||||| || |||
Sbjct 292 AGTATGTTCAGATCTCTATTAGCGATTCTTCAGTGGTGGGGTTTCAATGTTACCGTCATC 351
Query 91 ATCATGAACAAATGGATCTTTCAGAAACTGGATTTCAAATTTCCATTGTCAGTTTCATGT 150
||||||||||||||||||||||||||||||||||| || |||||| | || |||||||||
Sbjct 352 ATCATGAACAAATGGATCTTTCAGAAACTGGATTTTAAGTTTCCACTATCGGTTTCATGT 411
Query 151 GTTCATTTCATATGTTCATCGATTGGAGCTTACATTGTGATCAAAGT-CTTGAAGATTAA 209
||||| ||||||||||| ||||||||||||||||| || |||||||| || ||| ||||
Sbjct 412 GTTCACTTCATATGTTCGTCGATTGGAGCTTACATCGTTATCAAAGTTCTC-AAGCTTAA 470
Query 210 ACCTTTGATTGTGGTTGATCCTGAAGATCGTTGGAGGAGGATTTTTCCAATGTCATTT-G 268
||| |||||||| || |||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 471 ACCATTGATTGTTGTCGATCCTGAAGATCGATGGAGGAGGATTTTTCCAATGTC-TTTCG 529
Query 269 TCTTTTGTATCAACATTGTGTTGGGGAACATCAGTCTTAGATACATTCCTGTCTCTTTTA 328
| ||||||||||||||||| ||||| || |||||||| | |||||||| || || ||||
Sbjct 530 TGTTTTGTATCAACATTGTCTTGGGAAATGTCAGTCTTCGTTACATTCCGGTTTCGTTTA 589
Query 329 TGCAGACTATCAAATCTTTTACTCCGGCAACAACAGTGGTGTTACAGTGGTTGGTATGGA 388
||||||| || || ||||| ||||| || || ||||| |||||||||||| |||||||||
Sbjct 590 TGCAGACGATTAAGTCTTTCACTCCAGCTACTACAGTTGTGTTACAGTGGCTGGTATGGA 649
Query 389 GGAAATATTTTGAATGGCGTATTTGGGCGTCGT-TGGTGCCTATTGTTGGAGGGATTCTT 447
||||||| ||||| ||||||||||||||||| | | |||||||||||||| || ||||||
Sbjct 650 GGAAATACTTTGACTGGCGTATTTGGGCGTC-TCTCGTGCCTATTGTTGGTGGAATTCTT 708
Query 448 CTGACTTCTATTACAGAACTTAGCTTTAATGTGTTTGGATTCTGTGCTGCTTTGTTTGGA 507
||||| ||| | || |||||||| ||||| ||||||||||||||||||| ||||||||
Sbjct 709 CTGACATCTGTGACTGAACTTAGTTTTAACATGTTTGGATTCTGTGCTGCCCTGTTTGGA 768
Query 508 TGTTTAGCTACCTCTACAAAGACCATTCTTGCGGAATCTCTTCTTCATGGATACAAATTT 567
||||||||||| || |||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 769 TGTTTAGCTACTTCCACAAAGACCATTCTAGCCGAATCTCTTCTTCATGGTTACAAATTT 828
Query 568 GACAGCATAAACACGGTATACTATATGGCGCCTTTTGCGACCATGATTCTCGG-ATTACC 626
|||||||||||||| || |||||||||||||||||||| |||||||||||||| || |||
Sbjct 829 GACAGCATAAACACCGTTTACTATATGGCGCCTTTTGCCACCATGATTCTCGGGAT-ACC 887
Query 627 AGCATT-TCTACTTGAAGGCAATGGAATTTTGAATTGGTTTGAAGCACACCC-GTCTCCA 684
||| || | |||| ||||||| ||||||||||| ||||||||||||||||| | ||||
Sbjct 888 AGCGTTAT-TACTGGAAGGCAGTGGAATTTTGAGCTGGTTTGAAGCACACCCTG-CTCCC 945
Query 685 TGGTCGGCTCTCATCATTATTTTCAGCTCGGGTGTTCTAGCTTTCTGTCTTAACTTCTCC 744
||||| || ||||||||||| |||| || ||||||||||| |||||||| |||||||||
Sbjct 946 TGGTCAGCCCTCATCATTATACTCAGTTCTGGTGTTCTAGCCTTCTGTCTCAACTTCTCC 1005
Query 745 ATCTTCTATGTCATTCACTCCACAACGGCAGTCACATTCAATGTAGCTGGAAACCTTAAG 804
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 1006 ATCTTCTATGTCATTCACTCCACAACTGCAGTCACATTCAACGTGGCTGGAAACCTTAAG 1065
Query 805 GTTGCAGTAGCTGTGTTGGTATCATGGATGATATTCAAAAACCCGATATCACCGATGAAT 864
|||||||| ||||| |||| |||||| |||||||| ||||| |||||| ||||||
Sbjct 1066 GTTGCAGTGGCTGTAATGGTCTCATGGTTGATATTCCGTAACCCAATATCATATATGAAT 1125
Query 865 GCTGTTGGATGCGGAATCACACTTGTGGGCTGCACCTTTTATGGTTATGTAAGGCACATG 924
||||||||||||||||| || |||||||||||||| |||||||| ||||| ||||| |||
Sbjct 1126 GCTGTTGGATGCGGAATTACGCTTGTGGGCTGCACGTTTTATGGATATGTGAGGCATATG 1185
Query 925 CTTTCTCAGCAA-CAACCAGGAACTCCCAGGACTCCTCGTAACCCAAGGAA-CAAGATGG 982
||||| |||||| || || |||||||| ||||||||||||| |||||| || ||||||||
Sbjct 1186 CTTTCACAGCAAACA-CCGGGAACTCCTAGGACTCCTCGTACCCCAAG-AAGCAAGATGG 1243
Query 983 AACTGA-TTCCTCTTGTTAAT---GATAAACTAGAGAGT-AAAGTTTGA 1026
|| | | |||| ||||||||| |||||||| || || ||||| |||
Sbjct 1244 AATT-ACTTCCACTTGTTAATAATGATAAACTCGA-AGGCAAAGTCTGA 1290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5