BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313081
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21890.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1796 0.0
> AT1G21890.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr1:7682584-7685662 REVERSE LENGTH=1475
Length=1475
Score = 1796 bits (972), Expect = 0.0
Identities = 1090/1147 (95%), Gaps = 8/1147 (1%)
Strand=Plus/Plus
Query 1 ATGTGGG-GAGGGTTAATGAATAGTGTAAAACCATACTTAGCAATGATATCTATGCAATT 59
||| ||| ||||||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 82 ATG-GGGAGAGGGTTAATGAATAGTTTGAAACCATACTTAGCAATGATATCTATGCAGTT 140
Query 60 TGGTTATGCCGGTATGTACATAATTACCATGGTCTCTCTTAAGCATGGCATGAACCATTA 119
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 141 TGGTTATGCCGGTATGTACATAATCACCATGGTCTCTCTTAAGCATGGCATGAACCATTA 200
Query 120 CGTCCTAGCCGTTTATCGCCATGCAATTGCCACTGCCGTCATCGCTCCGTTTGCTCTTTT 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 201 CGTCCTAGCCGTTTATCGCCATGCAATTGCCACTGCCGTCATCGCTCCATTTGCTCTTTT 260
Query 180 TCATGAAAGGAAAATAAGGCCCAAGATGACATTCCGAATATTTCTCCAAATTGCGCTGCT 239
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 261 CCATGAAAGGAAAATAAGGCCCAAGATGACGTTCCGAATATTCCTCCAAATTGCGCTGCT 320
Query 240 CGGTTTTATTGAGCCGGTGCTGGATCAGAACCTCTACTACGTCGGGATGACTTACACGTC 299
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 321 CGGTTTTATTGAGCCGGTGCTTGATCAGAACCTCTACTACGTCGGGATGACTTACACGTC 380
Query 300 AGCAACTTTCGCTTCGGCTACCGCTAATGTCCTTCCGGCCATCACCTTCGTCTTGGCCAT 359
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 381 AGCAACTTTCGCTTCTGCTACTGCTAATGTCCTTCCGGCCATCACCTTCGTCTTGGCCAT 440
Query 360 TATTTTCAGATTAGAGAGCGTGAACTTTAAGAAGGTACGAAGCATAGCCAAAGTTGTAGG 419
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 TATTTTCAGGTTAGAAAGCGTGAACTTTAAGAAGGTACGAAGCATAGCCAAAGTTGTAGG 500
Query 420 AACGGTGATCACAGTCTCCGGAGCACTTCTCATGACTCTCTACAAAGGTCCAATAATTGA 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 501 AACGGTGATCACAGTCTCCGGAGCACTTCTCATGACTCTCTACAAGGGTCCAATAGTTGA 560
Query 480 CTTTATAAGATTCGGCGGTGGCGGAGGAGGAAGCAGTGACGGTGC------CTCCCGCAG 533
|||||| ||||||||||||| ||||||||| | ||||| ||||| |||| | |
Sbjct 561 CTTTATCCGATTCGGCGGTGGAGGAGGAGGAGGTAGTGATGGTGCAGGAGGATCCCACGG 620
Query 534 TGGTGCATCAGCGGCGGCGTTGGACAAACACTGGATTCCGGGAACACTTATGCTGTTGGG 593
||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 621 TGGTGCAGGAGCGGCAGCGATGGACAAACACTGGATTCCGGGAACACTTATGCTGTTGGG 680
Query 594 AAGAACTTTTGGTTGGGCCGGTTTCTTCATCCTACAATCGTTTACACTGAAGAAGTATCC 653
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 681 AAGAACTTTTGGTTGGGCCGGTTTCTTCATCCTACAATCGTTTACACTGAAGCAGTACCC 740
Query 654 AGCTGAGCTGTCACTAACGACGTTAATATGTTTAATGGGAACTTTAGAAGGAACCGCCGT 713
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 741 AGCTGAGCTGTCATTAACGACGTTAATATGTTTAATGGGAACGTTAGAAGGAACCGCTGT 800
Query 714 CTCATTGGTAACGGTACGTGACTTGAGTGCTTGGAAAATCGGCTTCGACTCTAATCTCTT 773
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 TTCATTGGTAACGGTACGTGACTTGAGTGCTTGGAAAATCGGCTTCGACTCTAATCTCTT 860
Query 774 CGCTGCTGCCTACTCCGGGGTGATATGTTCGGGTGTGGCGTATTACGTGCAAGGAGTAGT 833
||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 861 CGCCGCTGCTTACTCCGGGGTGATTTGTTCGGGAGTGGCGTATTACGTGCAAGGAGTAGT 920
Query 834 AATGAGAGAAAGAGGACCAGTTTTTGTTGCGACATTTAATCCACTTTGTGTCGTTATAAC 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 AATGAGAGAAAGAGGACCAGTTTTTGTTGCGACATTTAATCCACTTTGTGTCGTTATAAC 980
Query 894 TGCTGCTCTTGGTGTTGTTGTCTTGTCCGAAAGTATTCATCTCGGAAGTGTGATTGGAAC 953
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 981 TGCTGCTCTTGGTGTTGTTGTCTTGTCTGAAAGCATTCATCTCGGAAGTGTGATTGGAAC 1040
Query 954 GTTATTTATAATCGTGGGCCTATACACTGTTGTATGGGGTAAAGGCAAAGACAAAAGAAT 1013
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 GCTATTTATAATCGTGGGCCTATACACTGTTGTATGGGGTAAAGGCAAAGACAAAAGAAT 1100
Query 1014 GACGGATGATGACGAAAATTGCAAAGGACTTCCGATTAAAACTCCGGTTAAACAGGTAGA 1073
|||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1101 GACGGATGATGACGAAGATTGCAAAGGACTTCCGATTAAAAGTCCGGTTAAACCGGTAGA 1160
Query 1074 TACCGGTAAAGGCTTAGCCGGAGAACTGGAGATGAAACCTAAGGAAGGTCAAGAGACTAA 1133
|||||||||||||||||||| |||||||||||||||| | ||||||||||||||| | ||
Sbjct 1161 TACCGGTAAAGGCTTAGCCGCAGAACTGGAGATGAAATCAAAGGAAGGTCAAGAGGCAAA 1220
Query 1134 GGCTACT 1140
|||||||
Sbjct 1221 GGCTACT 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56676415305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5