BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313100
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22120.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1735 0.0
> AT1G22120.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:7806309-7809632
REVERSE LENGTH=1598
Length=1598
Score = 1735 bits (939), Expect = 0.0
Identities = 1256/1402 (90%), Gaps = 50/1402 (4%)
Strand=Plus/Plus
Query 1 ATGGCTTCAAGCGACGATCTTGAATTTTCGTTTTTGGATTTACCAGAAACTTTTGGTGCT 60
|||||||||| ||||||||||||||||||||| || || ||||||||||||||||||| |
Sbjct 1 ATGGCTTCAAACGACGATCTTGAATTTTCGTTCTTCGACTTACCAGAAACTTTTGGTGTT 60
Query 61 CTTACGGAGTATGTG-GGAAATGCTTCGTTGCTGGTTTCAGAAAATGAACAAAATGACTT 119
|| ||||||| || | ||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 61 CTCACGGAGTGTG-GAGGAAATGCTTCGTTGCTGGTTTCAGAAAATGAACACAATGACCT 119
Query 120 TGTTGGATACATCCCTGTCTCTGCCACCACAAGTAATGT-TTATCCTGCACCACTAATAG 178
||||||||| | ||||||||||||| |||||||| |||| || |||| ||||||||||||
Sbjct 120 TGTTGGATATAACCCTGTCTCTGCCGCCACAAGTGATGTGTT-TCCTTCACCACTAATAG 178
Query 179 AGAATTCAAACACTGATCAAGAGATCGAGACATTGACAAGAAC-T--TCAAGCTTTGATC 235
||||||||||||| |||| | | ||||||||||||||||| | |||||||||||||
Sbjct 179 AGAATTCAAACACCGATC---A-A--GAGACATTGACAAGAACTTCATCAAGCTTTGATC 232
Query 236 AAGAGACAGCCATAGTAGCACACAATCAAAGCTTTCATCAGGAGGACGATTATGCTAAGT 295
|||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||||||
Sbjct 233 AAGAGACAGCCATAGTAGCACACAATCAAAGCTTTCATCAAGATGACGACTATTCTAAGT 292
Query 296 ATTTCAACACCGCCGAAAACTTTAATGACATATCGCCGAGTGTCTTTAGCAATGGCCAAA 355
|||| | ||| || ||||||||||||||||| || ||||||| ||||||||||||||||
Sbjct 293 ATTTGACCACTGCAGAAAACTTTAATGACATGCCGTCGAGTGTATTTAGCAATGGCCAAA 352
Query 356 GAGAAAATGTGTACAGTGGAAATTGTGTCCTAACCTCGAGCAATC-AA--ATG---A-T- 407
||||||||||| ||||||||| || ||||||||| |||||||||| || ||| | |
Sbjct 353 GAGAAAATGTGGACAGTGGAAGTTATGTCCTAACTTCGAGCAATCAAATGATGACTACTG 412
Query 408 G---AC---C-ACTG--G-ACAACATGGACCTCTAGAGCAAAGTTATCAACAACCTTTAT 457
| || | |||| | |||||||||||||| ||||||||||||||||||||||||||
Sbjct 413 GACTACAATCAACTGATGTACAACATGGACCTCCAGAGCAAAGTTATCAACAACCTTTAT 472
Query 458 TGTCTCAAACATTTCCCGATTTCTCTAACGAGCCATATGTTTCAACACTGGTAAGGAGTA 517
||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 473 TGTCTCAGACAATTCCCCATTTCTCTAACCAGCCATATGTTTCAACACTGGTAAGGAGTA 532
Query 518 ATATACAAGAAATGGAG-AGAGCTAATGGACCTACAAATCTCAATCTAATCCAGCATGGC 576
||||||||||| ||| | | |||||||||||||||||||||||||||||| || ||||||
Sbjct 533 ATATACAAGAAGTGGGGCA-AGCTAATGGACCTACAAATCTCAATCTAATTCATCATGGC 591
Query 577 CTTCAAGATCATCACTTCCATCCTTCTTTGTATCAGGAGGAACAATATAATCACACTGAC 636
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||
Sbjct 592 CTTCAAGATCATCACTTTCATCCTTCTTTGTATCAGAAGGAACAATATAATCACACCGAC 651
Query 637 TTACTACTTGAACAACTCGTGCGAATTCATGAAACTGAACATCAAATGCAACTACCAAAA 696
| ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||
Sbjct 652 TCACTACTTGAACAAATCATGCGTATTCATGAAACTGAACATCAAATGCAACTACCAAAG 711
Query 697 TTCTCTAACATGTC---TACCCCAACATCAGTAGGGACATTGCTAAACAATCAAGGCCTA 753
||| | |||||||| ||||||||||||||| |||||| |||||||||||||| |||||
Sbjct 712 TTCACAAACATGTCTAGTACCCCAACATCAGTGGGGACACTGCTAAACAATCAATGCCTA 771
Query 754 ATTCCTTTTGCCTCGACTCCAAATACTAT-ACCGAATCCAGACTCAGGAAACTACTCACC 812
| ||||||||| |||||||||| || | | | || ||||||| ||||||| ||||||||
Sbjct 772 AGTCCTTTTGCATCGACTCCAACTATTTTGA-CGCATCCAGAGACAGGAAATTACTCACC 830
Query 813 ATTTACGCAAAGGTCATATGAGCCTGACTCATTTGCTTATGCCTTCCAGAAATCAAGCTC 872
||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 831 ATTTACGCATAGGTCATATCAGCCTGACTCATTTGCTTATGCCTTCCAAAAATCAAGCTC 890
Query 873 GTTAAACCCTACTCGTCGCCCCCGTGGAAGGCCCAGGAGATTTCAAAGTGTTATGCCTTC 932
||||||||||||||| || |||||||||||||| |||||| ||||||||||||||||| |
Sbjct 891 GTTAAACCCTACTCGCCGGCCCCGTGGAAGGCCGAGGAGAATTCAAAGTGTTATGCCTCC 950
Query 933 AAGTTTGACTATTACTACACCA-AATAACATGTCTTTGGTACCTGCAACTCAAACCCTAT 991
|||||||| ||||| |||||| || ||||||||||| |||||||||| |||||||||||
Sbjct 951 GAGTTTGACAATTACAACACCACAA-AACATGTCTTTAGTACCTGCAATTCAAACCCTAT 1009
Query 992 TAACCCCTCCCAG---GCCTTAT---GCCCAAGATAAGGGAAAACAACATGTTACAGCAA 1045
||| |||||||| ||| ||| |||||||| ||||||||||||||||||||||| |
Sbjct 1010 CAACACCTCCCAGTACGCCCTATCGCGCCCAAGAGAAGGGAAAACAACATGTTACAGCGA 1069
Query 1046 TGCCGTCTTTGAACCCAACTCTCTACAATCAGTATCAAAATTCATACCCAAACTCAATGA 1105
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1070 TGCCGTCTTTGAACCCAACTCTCTACAATCAGTATCAAAATTCATACACAAACTCAATGA 1129
Query 1106 TCCAACAGAGTGGAGGTTTAAGACAACGC-AGTTGTTATGATCAATTTGAAAATGAAGGT 1164
|||||||| ||||||||||||| |||||| | ||||||||||||||||||||||||||||
Sbjct 1130 TCCAACAGGGTGGAGGTTTAAGCCAACGCGA-TTGTTATGATCAATTTGAAAATGAAGGT 1188
Query 1165 TCTTCGTCTAAAATAAGGAG-AGTCATGTTACCGTTTCAAGAAAATAGTATAGCAGATTC 1223
||||||||||||| || ||| | |||||||||||||||||||||| ||||||||||| ||
Sbjct 1189 TCTTCGTCTAAAAGAAAGAGGA-TCATGTTACCGTTTCAAGAAAAAAGTATAGCAGAATC 1247
Query 1224 ATCGAGTGTATCTCTTTGGCAAGATGGAAATAGGCGTTCAAGTGCGGCCAATCACCATGA 1283
|||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1248 GTCGAGTGTATCTCTATGGCAAGATGGAAATAGGCGTTCAAGTGCGGCCAATAACAATGA 1307
Query 1284 AGAAAGGTTAAAAAATGCAGTATACGATCCATTTTATGCAGGTGTTGGATTACCCATTGA 1343
|| |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1308 GGAGAGGTTAGAAAATACAGTATACGATCCATTTTATGCAGGTGTTGGATTACCCCTTGA 1367
Query 1344 TCCTCATTTGAGGTTCTTTTGA 1365
||||||||||||||||||||||
Sbjct 1368 TCCTCATTTGAGGTTCTTTTGA 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67218529755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5