BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313108
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22210.1 | Symbols: TPPC | Haloacid dehalogenase-like hydrol... 1531 0.0
> AT1G22210.1 | Symbols: TPPC | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr1:7841518-7844056 FORWARD
LENGTH=1207
Length=1207
Score = 1531 bits (829), Expect = 0.0
Identities = 941/995 (95%), Gaps = 7/995 (1%)
Strand=Plus/Plus
Query 1 ATGAAGATTACGGATGCTGCGGGAAAGATCGAGACTTTGGTCGATTCATTGAGGGATATG 60
||||||||||||||| | | |||||||||||||||||||| ||||| || |||||||||
Sbjct 1 ATGAAGATTACGGATATTTCCGGAAAGATCGAGACTTTGGTTGATTCCTTAAGGGATATG 60
Query 61 TCCCCGACCCGTGTCAGATCTTCCTCCTCTGATGAACATGTATCCGAGAACGATGACGAG 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 TCCCCGACCCGTGTCAGATCTTCCTTCTCTGATGAACATGTATCCGAGAACGATGACGAG 120
Query 121 AGAAGCTCCTGGATTGCACGTCATCCGTCCGCATTAGATATGTTCG-ACAAAATCATGAC 179
||||||||||||||||| | ||||||||| ||||| |||||||||| || |||||||| |
Sbjct 121 AGAAGCTCCTGGATTGCTCTTCATCCGTCAGCATTGGATATGTTCGAAC-AAATCATG-C 178
Query 180 -TGATGCAGAAGGCAAACAAATTATTATGTTTCTTGACTACGATGGAACTCTCTCACTAA 238
|||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 179 GTGATGCTGAAGGCAAACAAATTATTATGTTTCTTGATTACGACGGAACTCTCTCGCTAA 238
Query 239 TCACTGAAGATCACGACAAAGCTTACATAACCGACGAGATGCGAGAAGTTGTAAAGGAAG 298
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 239 TCACTGAAGATCACGACAGAGCCTACATAACCGACGAGATGCGAGAAGTTGTAAAGGAAG 298
Query 299 TGGCTACGTATTTCAAGACTGCGATCATCAGCGGACGAAGTACTGACAAAGTACAGAGTT 358
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 299 TGGCTACATATTTCAAGACAGCGATCATCAGCGGACGAAGCACTGACAAAGTACAGAGTT 358
Query 359 TTGTGAAACTCACTGGAATTCACTACGCCGGTAGCCACGGCATGGACATTAAGGGTCCGA 418
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 359 TTGTGAAACTCACTGGTATTCACTACGCTGGGAGCCACGGCATGGACATTAAGGGTCCGA 418
Query 419 CAAATACCGATCAGAGTAACCAAGGAGAAGTGATGTTTCAACCTGCAAGTGACTATTTAC 478
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 419 CAAATACCGATCAGAGTAACCAAGAAGAAGTGATGTTTCAACCTGCAAGTGACTATTTAC 478
Query 479 CGATGATTGACGAGGTGGTTAACGTTTTAAAGGAAAAGACAAAATTTATCCCTGGAGCTA 538
|||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||
Sbjct 479 CGATGATTGACGAGGTGGTTAATGTTTTGAAGGAAAAGACAAAATCTATCCCTGGAGCTA 538
Query 539 CGGTCGAGCACAACAAGTTTTGTCTAACAGTACATTTTCGTCGCGTTGATGAAACGGGAT 598
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 539 CGGTCGAGCACAACAAGTTTTGTCTAACAGTACATTTTCGTCGGGTCGATGAAACGGGAT 598
Query 599 GGGCTGCACTAGCCGAGCAAGTGAGATTGGTTCTCATTGATTATCCCAAATTGAGACTGA 658
|||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 599 GGGCTGCATTAGCTGAGCAAGTGAGATTGGTTCTCATTGATTATCCGAAATTGAGACTGA 658
Query 659 CACAAGGCAGAAAGGTGTTAGAACTCCGACCTTCCATCAAATGGGACAAGGGAAAGGCTC 718
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CACAAGGCAGAAAGGTCTTAGAACTCCGACCTTCCATCAAATGGGACAAGGGAAAGGCTC 718
Query 719 TTGAATTTTTGCTAAAGTCATTAGGGATAGCTGAATCTAAAGATGTTTTACCGGTGTACA 778
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 719 TCGAATTTTTGCTAAACTCATTAGGGATAGCAGAATCTAAAGATGTTTTACCGGTTTACA 778
Query 779 TTGGAGATGACCGTACTGATGAAGATGCATTTAAGGTTTTATGTGAAAGGGGACAAGGTT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTGGAGATGACCGTACTGATGAAGATGCATTTAAGGTTTTATGTGAAAGGGGACAAGGTT 838
Query 839 TTGGGATTGTCGTCTCAAAAACTCTTAAGGAAACCTACGCCTCCTACTCTCTTCAAGACC 898
|||||||| |||||||||||||| |||||||||| |||||||| ||||||||||||||||
Sbjct 839 TTGGGATTATCGTCTCAAAAACTATTAAGGAAACGTACGCCTCTTACTCTCTTCAAGACC 898
Query 899 CATCTCAGGTTAAAGAATTTCTGGAGCGTTTGGTAAAGTGGAAGAAACAAACACTTGGAG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CATCTCAGGTTAAAGAATTTCTGGAGCGTTTGGTAAAGTGGAAGAAACAAACACTTGGAG 958
Query 959 AAGAAGAAGAAG---TGATTCATACGATAGATTGA 990
|| ||||||||| || |||||| || | |||||
Sbjct 959 AATAAGAAGAAGAACTGGTTCATAAGAGATATTGA 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48475951855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5