BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313117
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22300.1 | Symbols: GRF10, 14-3-3EPSILON, GF14 EPSILON | gen... 1264 0.0
> AT1G22300.1 | Symbols: GRF10, 14-3-3EPSILON, GF14 EPSILON | general
regulatory factor 10 | chr1:7878769-7881219 REVERSE LENGTH=1258
Length=1258
Score = 1264 bits (684), Expect = 0.0
Identities = 734/759 (97%), Gaps = 0/759 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAATGAGAGGGAAAAGCAGGTTTACTTGGCTAAGCTCTCTGAGCAAACCGAAAGA 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 117 ATGGAGAATGAGAGGGAAAAGCAGGTTTACTTGGCTAAGCTCTCCGAGCAAACCGAAAGA 176
Query 61 TACGATGAAATGGTGGAGGCGATGAAGAAAGTTGCTCAGCTTGATGTGGAGCTAACTGTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TACGATGAAATGGTGGAGGCGATGAAGAAAGTTGCTCAGCTTGATGTGGAGCTAACTGTG 236
Query 121 GAGGAGAGAAATCTTGTTTCTGTGGGGTACAAGAATGTGATTGGTGCAAGGAGAGCTTCA 180
|| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 237 GAAGAGAGGAATCTTGTATCTGTAGGGTACAAGAATGTGATTGGTGCAAGGAGAGCATCA 296
Query 181 TGGAGAATACTATCCTCCATTGAGCAGAAGGAAGAGTCCAAGGGAAATGAGGAAAATGTC 240
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 297 TGGAGAATACTATCTTCCATTGAGCAGAAGGAAGAGTCCAAGGGAAATGATGAAAATGTC 356
Query 241 AAGAGGCTTAAGACTTATCGAAAGAGGGTTGAAGATGAGCTTGCCAAAGTTTGTAATGAC 300
||||||||||||| |||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 357 AAGAGGCTTAAGAATTATCGTAAGAGAGTTGAAGATGAGCTTGCTAAAGTTTGTAATGAC 416
Query 301 ATCTTGTCCGTCATCGATAAGCATCTCATTCCATCGTCTAACGCTGTGGAGTCAACTGTC 360
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ATCTTGTCTGTCATTGATAAGCATCTCATTCCATCGTCTAACGCTGTGGAGTCAACTGTC 476
Query 361 TTTTTCTACAAAATGAAAGGAGATTACTATCGCTATCTGGCAGAGTTCAGTTCTGGTACT 420
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 477 TTTTTCTACAAAATGAAAGGAGATTACTATCGCTATCTTGCGGAGTTCAGTTCTGGTGCT 536
Query 421 GAACGCAAGGAAGCTGCAGATCAGTCTCTTGAAGCATATAAGGCTGCTGTTGCTGCTGCA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GAACGCAAGGAAGCTGCAGATCAGTCTCTTGAAGCATATAAGGCTGCTGTTGCTGCTGCA 596
Query 481 GAGACTGGTTTGGCACCCACACATCCAGTTAGACTTGGCTTGGCATTGAACTTTTCAGTT 540
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 597 GAGAATGGTTTGGCACCCACACATCCAGTTAGACTTGGCTTGGCGTTGAACTTTTCAGTT 656
Query 541 TTCTACTATGAGATCTTGAACTCTCCCGAAAGCGCATGCCAATTGGCTAAGCAAGCATTC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TTCTACTATGAGATCTTGAACTCTCCCGAAAGCGCATGCCAATTGGCTAAGCAAGCATTC 716
Query 601 GATGATGCAATTGCTGAACTTGACAGCCTCAACGAGGATTCATACAAGGACAGCACTCTT 660
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 717 GATGATGCAATTGCTGAACTTGACAGCCTCAACGAGGAATCATACAAAGACAGCACTCTT 776
Query 661 ATTATGCAGCTACTTAGAGACAATCTCACCTTGTGGACTTCAGACCTCAATGAGGAAGGA 720
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 777 ATTATGCAGCTACTTAGAGACAATCTCACCTTGTGGACTTCAGACCTTAATGAGGAAGGA 836
Query 721 GATGAGCGATCCAAAGGTGCTGATGAGCCTCAAGAAGAG 759
|||||| || ||||||||||||||||||||||||| |||
Sbjct 837 GATGAGAGAACCAAAGGTGCTGATGAGCCTCAAGATGAG 875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37173268780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5