BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313119
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1363 0.0
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 549 2e-155
> AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886542-7889534 FORWARD LENGTH=1320
Length=1320
Score = 1363 bits (738), Expect = 0.0
Identities = 834/880 (95%), Gaps = 8/880 (1%)
Strand=Plus/Plus
Query 1 ATGTCTAATACAAGCTATTACCGATCACCGTTCGGTGACACGACCCACACCAAAGTGTTC 60
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 152 ATGTCTAATACAAGCTATTACCGATCACCGTTCGGAGACACGACTCACACCAAAGTGTTT 211
Query 61 GTTGGAGGTTTAGCATGGGAGACTCCGACCGATGAAATGCGCCGTTACTTCGATCAGTTC 120
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 212 GTAGGAGGTTTAGCATGGGAGACTCCCACCGATGAAATGCGCCGTTACTTTGATCAGTTC 271
Query 121 GGAGAGATTCTTGAAGCCGTCATCATTACCGATAAGACCACCGGAAAATCTAAAGGCTAT 180
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 272 GGAGAGATTCTTGAAGCCGTCATCATTACCGATAAGGCTACCGGAAAATCTAAAGGCTAC 331
Query 181 GGTTTTGTCACGTTTCGAGAGTCCGACTCAGCGACGAGAGCTGTCGCTGATCCGAATCCG 240
|||||||||||||||||||| || || |||||||||||||| ||||||||||||||||||
Sbjct 332 GGTTTTGTCACGTTTCGAGACTCGGATTCAGCGACGAGAGCCGTCGCTGATCCGAATCCG 391
Query 241 GTGATCGATGGACGAAAGGCGAATTGCAATATTGCGTCTTTTGGACGGCCCCGACCATCG 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 392 GTGATCGATGGACGAAAGGCAAATTGCAATATTGCGTCTTTTGGACGGCCCCGACCATCG 451
Query 301 ACGCCTCGAGGACGAGGACAAGGAGGAAGCCCGAGTCAATATCAAGGCGGAGGACAATCA 360
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 452 ACGCCTCGAGGACGAGGACAAGGAGGAAGCCCTAGTCAGTATCAAGGCGGAGGACAATCA 511
Query 361 AGCTACACCGGAATGGCAGCTCCGGTGCAGCAGGCTGCGACTGCCCAGCTCATGTATCCG 420
||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 512 AGCTATACCGGAATGGCTGCTCCGGTGCAGCAGGCTGCGGCTGCCCAGCTCATGTATCCG 571
Query 421 TCATACGGGTACACCTACAATTCTGAATATGGGTACCACCAAGCCCTATACAACGCACAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 TCATACGGGTACACCTACAATTCTGAATATGGGTACCACCAAGCCCTATACAACGCACAG 631
Query 481 CTCCAACAGGCACAATACTATCAACAGCAAATGTACGGAGGAGGAGGAGGAGCAACATCA 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 632 CTCCAACAGGCACAATACTATCAACAGCAAATGTACGGAGGAGGAGGAG---CAACATCA 688
Query 541 CCATCATCATCCAACATCATGCCTTCCCCTTATTACTACCTTCAAGCTCCAAGCCCTAGA 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 689 CCATCATCATCCAACATCATGCCTTCCCCTTATTACTACCTCCAAGCTCCAAGCCCTAGA 748
Query 601 Ccatatcctcatcatcaacaaca--a-cattatcagtatcatcatcatcagcagcaacaa 657
||||||| ||||||||||||||| | || ||||| ||||||| || ||||||||||||
Sbjct 749 CCATATCTTCATCATCAACAACATTATCAATATCACCATCATCAGCAGCAGCAGCAACAA 808
Query 658 cagcaacaacGTTTACCTTCTGCTTCTTCTTACCTAATTTACCCATCCAATATTGAGGCT 717
|| ||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 809 CAACAACAACGTTTACCTTCTGCTTCATCTTACCTAATTTACCCATCCAATGTCGAGGCT 868
Query 718 CCTACGTCC-TCTAATGCCCCTACTTCCCAAGGGCCACTATCTTCTTCCACTGAATCACA 776
||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 CCTAC-TCCATCTAATGTCCCTACTTCCCAAGGGCCACTATCTTCTTCCACTGAATCACA 927
Query 777 CGCACCACAACAAGTATCAGAAGAAGGTGGAGAATTCGATGCAGCGGATGCACCTGAAAG 836
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 928 CGCACCACAACAAGTATCAGAAGAAGGTGGAGAATTCGATCCAACGGATGCACCTGAAAG 987
Query 837 TACAACCACGAACACCAGAGACTTAACGTCGTCTTCATGA 876
||| || ||||||| ||||||||||||||| ||||| |||
Sbjct 988 TACGACTACGAACATCAGAGACTTAACGTCATCTTCTTGA 1027
> AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29446985-29450515 FORWARD LENGTH=1530
Length=1530
Score = 549 bits (297), Expect = 2e-155
Identities = 475/560 (85%), Gaps = 15/560 (3%)
Strand=Plus/Plus
Query 1 ATGTCT-AATACAAGCTATTACCGATCACCGTTCGGTGACACGACCCACACCAAAGTGTT 59
|||||| || |||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 333 ATGTCTCAA-ACAAGCTACTACCGATCACCGTTCGGAGACACGACTTACACCAAAGTGTT 391
Query 60 CGTTGGAGGTTTAGCATGGGAGACTCCGACCGATGAAATGCGCCGTTACTTCGATCAGTT 119
||| ||||| ||||| ||||| ||||| ||||| |||||||| ||||||||||| |||||
Sbjct 392 CGTCGGAGGATTAGCGTGGGAAACTCCTACCGACGAAATGCGTCGTTACTTCGAACAGTT 451
Query 120 CGGAGAGATTCTTGAAGCCGTCATCATTACCGATAAGACCACCGGAAAATCTAAAGGCTA 179
||||||||||||||||||||||||||| |||||||| | |||||| || |||||||||||
Sbjct 452 CGGAGAGATTCTTGAAGCCGTCATCATCACCGATAAAAACACCGGCAAGTCTAAAGGCTA 511
Query 180 TGGTTTTGTCACGTTTCGAGAGTCCGACTCAGCGACGAGAGCTGTCGCTGATCCGAATCC 239
|| || || |||||||| ||||| |||||||| |||||||| ||||||||||| |||||
Sbjct 512 CGGATTCGTGACGTTTCGGGAGTCGGACTCAGCCACGAGAGCCGTCGCTGATCCAAATCC 571
Query 240 GGTGATCGATGGACGAAAGGCGAATTGCAATATTGCGTCTTTTGGACGGCCCCGACCATC 299
||||||||| ||| |||| || ||||| |||||||| |||||||||||||| ||||||||
Sbjct 572 GGTGATCGACGGAAGAAAAGCCAATTGTAATATTGCATCTTTTGGACGGCCTCGACCATC 631
Query 300 GACGCCTCGAGGACGAGGACAAGGAGGAAGCCCGAGTCAATATCAAGGCGGAGGACAATC 359
| |||||||||| ||||||||| |||||| |||||||| || ||| | ||||||| |||
Sbjct 632 GCCGCCTCGAGGTCGAGGACAAACAGGAAGTCCGAGTCAGTACCAAAGTGGAGGACCATC 691
Query 360 AAGCTACACCGGAATGGCAGCTCCGGTGC-AGCAGGCTGC-GACTGCCCAGCTCATGTAT 417
|| ||| ||||| ||||| || || ||| | | |||||| | || ||||||||||||||
Sbjct 692 AACCTATACCGGGATGGCTGCACCACTGCCACC-GGCTGCAG-CTCCCCAGCTCATGTAT 749
Query 418 CCGTCATACGGGTACACCTACAATTCTGA--A-TATGGGTACCACCAAGCCCTATACAAC 474
||||| |||||||||||||| || |||| | | ||||||||||||||| | ||||||
Sbjct 750 CCGTCGTACGGGTACACCTATAACCCTGATCAATTTGGGTACCACCAAGCATTGTACAAC 809
Query 475 GCACAGCTCCAACAGGCACAATACTATCAACAGCAAATGTA-CGGAGG-A-GGAGGAGGA 531
||||| | ||||| |||||||||||||| ||||| | | | | | |||||||||
Sbjct 810 ACACAGTTGCAACAAGCACAATACTATCAGCAGCA---GCAACAGCTTTATGGAGGAGGA 866
Query 532 GCAACATCACCATCATCATC 551
||||||||||||||||||||
Sbjct 867 GCAACATCACCATCATCATC 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42749259097
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5