BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg313132

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G22470.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   691    0.0  


> AT1G22470.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G72240.1); 
Has 1693 Blast hits to 236 proteins in 54 species: Archae 
- 0; Bacteria - 8; Metazoa - 451; Fungi - 116; Plants - 94; 
Viruses - 2; Other Eukaryotes - 1022 (source: NCBI BLink). | 
chr1:7932854-7933390 REVERSE LENGTH=537
Length=537

 Score =  691 bits (374),  Expect = 0.0
 Identities = 418/439 (95%), Gaps = 4/439 (1%)
 Strand=Plus/Plus

Query  1    ATGGCAAACGTTTTCCTCATCAATAGCAGAAACAGAAGATCAATGCGAACAACAACAGAG  60
            |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| 
Sbjct  43   ATGGCAAACGTTTTCCTCATCAGTAGCAGAAACAGAAGATCAATGCGGACAACAACAGAA  102

Query  61   TCAAAACCCAAGAATATTACGGTAAAGAGATCAGATTCATCTTCAGACTACAAGTACTCA  120
            ||||||||||||||| ||||||| |||||||||||||||||||||||||| || ||||||
Sbjct  103  TCAAAACCCAAGAATCTTACGGTGAAGAGATCAGATTCATCTTCAGACTATAACTACTCA  162

Query  121  TGCAAGAAACATCCAAAGCAAAGACAATCTCCTGGAATATGTTCCCTTTGTCTCAACGAG  180
            |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  163  TGCAAGAAACATCCGAAGCACAGACAATCTCCTGGAATATGTTCCCTTTGTCTTAACGAG  222

Query  181  AGTCTCTCCAAGTTGTCTAGTGA-TTTCTATGACTTA-AGTTCAAGCATGAGCTCGTCTT  238
            ||||||||||||||||||||||| ||| |||||| || || |||||||||||||||||||
Sbjct  223  AGTCTCTCCAAGTTGTCTAGTGAGTTT-TATGAC-TATAGCTCAAGCATGAGCTCGTCTT  280

Query  239  CTTTGGCTAAAACGATGTCGTCTTGCTCCTCCGCCTCTTCGGAATCAGAATCAGATTATT  298
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct  281  CTTTGGCTAAAACGATGTCGTCTTGCTCCTCCGCTTCTTCGGAATCAGAATCAGATTTTT  340

Query  299  CTTCGACGGCTATATCTTCTTATTACTCTTCTGTCTCCTCTTGTTTATCTCCTCTGCAAC  358
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  341  CTTCGACGGCGATATCTTCTTATTACTCTTCTGTCTCCTCTTGTTTATCTCCTCTGCAAC  400

Query  359  ATAGATACAGTGAGATCGTTGTTAATAAGAAGAAAAAGAAGCATGTCAAAAAACAAAGCT  418
            ||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct  401  ATAGATACAGTGAGATCGTCGTTAATAAGAAGAAAAAGAAACATGTCAAGAAACAAAGCT  460

Query  419  TCCTCTCTAGATTATTTCT  437
            |||||||||||||||||||
Sbjct  461  TCCTCTCTAGATTATTTCT  479



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26925502792


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5