BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313201
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23270.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 603 7e-172
> AT1G23270.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G31460.1);
Has 901 Blast hits to 142 proteins in 59 species: Archae -
0; Bacteria - 69; Metazoa - 176; Fungi - 29; Plants - 28; Viruses
- 0; Other Eukaryotes - 599 (source: NCBI BLink). | chr1:8259602-8260144
REVERSE LENGTH=543
Length=543
Score = 603 bits (326), Expect = 7e-172
Identities = 487/559 (87%), Gaps = 34/559 (6%)
Strand=Plus/Plus
Query 1 ATGCCAA-TTTTTAATACTGGTAAAGACGATTTAGCTGTGG-CGAATCTGCTTTCACAAG 58
||| ||| ||||| |||||||||||| |||| |||||||| ||| || ||||||||||
Sbjct 1 ATGTCAAGTTTTT-TTACTGGTAAAGATGATTCAGCTGTGGAGGAA-CTTCTTTCACAAG 58
Query 59 CTAAAGATCACTACGTTCTTGAACAAGTCGCCAAAATCAACTGCTCTGGCTTCACCGACG 118
|||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 59 CTAAAGATCAATACGTTCTTGAACAAGTCGCCAAAATCAACTGTTCAGGCTTCACCGACG 118
Query 119 ACTCTGCTCTTCCCTCTAATCACGAAACCCGTTTCCGTCGTCTCAAATCTCTTCCGGTTT 178
|| ||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 119 ACACTGCTCTTCCCACTAATCCCGAAACCCGTTTACGTCGTCTCAAATCTCTTCCGGTTT 178
Query 179 CTCG-ACCTGACTCTGTTTCGTCTTCCTCGAAGAAACTTCTCTCTCAGTCCAAGAGCAAG 237
|||| ||| ||||| |||||||||||| ||||||||| | |||||| |
Sbjct 179 CTCGAACC-GACTCGGTTTCGTCTTCCCCGAAGAAAC-T-TCTCTC--T----------- 222
Query 238 GCAAGCCAGTCCAAGAGCATGGCAAGTTACCCTGAGAAGAAGAACCATGGAAACGTTTCC 297
| | | ||||| |||||||||||| |||||||||||||| | | |||||||||||||
Sbjct 223 -C-A--C--TCCAATAGCATGGCAAGTCACCCTGAGAAGAAGTATCGTGGAAACGTTTCC 276
Query 298 TCTGTTTCTTCTTTTTCGAACCAAGTTGGAAAGTCTTGTCCTTTAGATTCATCTGTTGAG 357
|| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 277 TCAGTTTCTTCTTTTTCCATCCAAGTTGGAAAGTCTTGTCCTTTAGATTCATCTGTTGAG 336
Query 358 GAAACACAGATTTTCTCGAGAACCAAACTTAATCAGAGAGTG-AGTTCACGAGATGGGCT 416
||||||||||||||||||| |||||||| ||||||||| ||| || ||||||| ||||||
Sbjct 337 GAAACACAGATTTTCTCGAAAACCAAACGTAATCAGAGTGTGAAG-TCACGAGGTGGGCT 395
Query 417 TGTAGAATCTTCAGGTTCTAGGAGAATTGGTTCGAGTTCATCGAGATTTTCTTGTGGAAA 476
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 396 TGGAGAATCTTCAGGTTCTAAGAGAATTGGTTCGAGTTCATCGAGATTTTCTTGTGGAAA 455
Query 477 CGTGTCCTCTAGAGAATCGGTTCGAGTTCATCAAGATATTCTCGAGAAGGTAAGATTTCG 536
||||||||||| |||||||||||| || || | ||||||||||||||| || |||
Sbjct 456 CGTGTCCTCTAC-----CGGTTCGAGTTCCTCGAGGTTTTCTCGAGAAGGTAACATCTCG 510
Query 537 ACTACAACACAAACCCTGA 555
||| ||||| |||||||||
Sbjct 511 ACTGCAACAAAAACCCTGA 529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26624097910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5