BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313215
Length=3405
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23450.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3005 0.0
AT1G23460.1 | Symbols: | Pectin lyase-like superfamily protein... 846 0.0
AT1G23470.1 | Symbols: | pseudogene, polygalacturonase (pectin... 257 4e-67
AT1G70500.1 | Symbols: | Pectin lyase-like superfamily protein... 217 7e-55
AT5G19020.1 | Symbols: MEF18 | mitochondrial editing factor 18... 65.8 3e-09
> AT1G23450.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:8324698-8326697 FORWARD LENGTH=2001
Length=2001
Score = 3005 bits (1627), Expect = 0.0
Identities = 1865/1982 (94%), Gaps = 7/1982 (0%)
Strand=Plus/Plus
Query 1 ATGCGAGGGGCTCAAGCTTTATACTTTCTTCGTAGAACAACGACGTTAGCTCAACATTTG 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGCGAGGGGCTCAAGCTTTATACTTTCTTCGTAGAACAACGACTTTAGCTCAACATTTG 60
Query 61 TGTCCTCTTGCACCGCTTATTGTGACGCCTCGTATGGAGTTTAGTTCGTTTCTTGAAGAA 120
||| ||||| ||||| |||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 61 TGTTCTCTTACACCGTTTATTGCGACGCCTCGTATGGATTTTAGTTCGTTTCTTGAAGAG 120
Query 121 AATCCTAGCGACCTCGTTTATACCCATAACCGTAAAATTGATGAATTGATTAAATCCGGG 180
|| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 AACCCTAGCGACCTTGTTTATACCCATAACCGTAGAATTGATGAATTGATTAAATCCGGG 180
Query 181 AACTTGGTATCTGCACATGAAGTGTTCGATGGAATGTCTGTACGAGATGTTGTTACTTAT 240
|||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 181 AACTTGTTATCTGCACATGAAGCGTTCGATGAAATGTCTGTACGAGATGTTGTTACTTAT 240
Query 241 AATCTTCTTATTTCTGGGAATAGTCGAAATGGGTGTTCTTTAAGAGCTATTGAAATTTAT 300
|||||||||||||||||||||||| || |||||||||||||||||||||| ||| | ||
Sbjct 241 AATCTTCTTATTTCTGGGAATAGTAGATATGGGTGTTCTTTAAGAGCTATAGAACTCTAC 300
Query 301 GCGGAGATGGTCTCTTGTGGTCTTAGAGAAAGCGCTTCCACGTTTGCTTCTGTTCTGAGT 360
|||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct 301 GCGGAGATGGTCTCTTGTGGTCTTAGAGAAAGTGCTTCCACGTTTCCTTCGGTTCTGAGT 360
Query 361 GTATGTAGTGATGAATTGTTCTGTAGAGAAGGGATTCAAGTTCATTGTAGGGTGATTTCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 GTATGTAGTGATGAATTGTTCTGTAGAGAAGGGATTCAAGTTCATTGTAGGGTAATTTCT 420
Query 421 CTTGGGTTTGGATGTAATATGTTTGTTAGATCTGCACTTGTGGGTCTTTATGCGTCATTT 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 421 CTTGGGTTTGGATGTAATATGTTTGTTAGGTCTGCACTTGTGGGTCTTTATGCGT-GTTT 479
Query 481 -TGGCTTGTTCATGTTGCTTTGAAGTTGTTTGATGAAATGCCTGAGAGAAATTTAGCTGT 539
|||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 480 GAGGCTTGTTGATGTTGCTTTGAAGTTGTTTGATGAAATGCTTGACAGAAATTTAGCTGT 539
Query 540 TTGCAATTTGCTGTTGAAATGTTTTTGCGAGACCGGAGAGTCCAAGCGATTGTTTGGAGT 599
|||||||||||||||| |||||||||| |||| |||||||||||||||||||||| |||
Sbjct 540 TTGCAATTTGCTGTTGCGATGTTTTTGCCAGACTGGAGAGTCCAAGCGATTGTTTGAAGT 599
Query 600 GTACCGTAGGATGGAACTTGAAGGTGTAGCTAAAAATGGGTTAACTTATTGTTATTTGCT 659
||||| |||||||||||||||||||||||| |||||||||||||| ||||||||| || |
Sbjct 600 GTACCTTAGGATGGAACTTGAAGGTGTAGCAAAAAATGGGTTAACGTATTGTTATATGAT 659
Query 660 CCGCGGTTGTTCTAATGATCAGTTGTTATATGTAGGGAAGCAATTGCATTCCCTAGTGAT 719
||| ||||| ||| |||||| |||| |||||| ||||||||||||||||||| ||||| |
Sbjct 660 CCGTGGTTGCTCTCATGATCGGTTGGTATATGAAGGGAAGCAATTGCATTCCTTAGTGGT 719
Query 720 TAAATCTGGATGGGACATTTCTAATATATTTGTTGCTAATGCGCTTGTGGACTATTACTC 779
||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 720 TAAATCTGGATGGAACATTTCTAATATATTTGTGGCTAATGTGCTTGTGGACTATTACTC 779
Query 780 TGCTTGTGGCGATTTATCCGGTTCTATAAAATCATTCAATGTTGTCCCAGAAAAAGATGT 839
||||||||| ||||||||||||||||| | ||||||||||| |||||||||||| |||||
Sbjct 780 TGCTTGTGGTGATTTATCCGGTTCTATGAGATCATTCAATGCTGTCCCAGAAAAGGATGT 839
Query 840 AATATCGTGGAACTCGATTGTTTCCGTGTGTGCAGATTACGGGTCTGTGCTTGATTCTCT 899
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 840 AATATCGTGGAACTCGATTGTTTCTGTGTGTGCAGATTACGGATCTGTGCTTGATTCTCT 899
Query 900 TGGTTTGTTTAGCAAGATGCAGTTTTGGGGGAAGAGACCTTCGATACGGTCATTCATGTC 959
| ||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||
Sbjct 900 CGATTTGTTTAGCAAGATGCAGTTCTGGGGGAAGAGACCTTCTATACGGCCATTCATGTC 959
Query 960 ATTTCTGAATTTCTGTAGCAGAAACAGTGATATTCAGTCCGGGAAGCAGATCCATTGCTA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATTTCTGAATTTCTGTAGCAGAAACAGTGATATTCAGTCCGGGAAGCAGATCCATTGCTA 1019
Query 1020 TGTTCTCAAAATGGGTTTCGACGTTTCAAGTCTTCTTGTCCAGTCTTCTCTTATCGACAT 1079
||||||||||||||||||||| ||||||||||||| ||| |||||| |||| || |||||
Sbjct 1020 TGTTCTCAAAATGGGTTTCGATGTTTCAAGTCTTCATGTACAGTCTGCTCTCATTGACAT 1079
Query 1080 GTATGGCAAATGCAATGAGATTGAGAGTTCTGTCTTGGC-TTACCAGAGTTTGCCTTGCC 1138
|||||| |||||||||| |||||||| ||||| ||| || ||||||||||||||||||||
Sbjct 1080 GTATGGGAAATGCAATGGGATTGAGAATTCTGCCTT-GCTTTACCAGAGTTTGCCTTGCC 1138
Query 1139 TGACTCTGGAGTGCTGTAACTCGCTGATGACTTCTCTGATGCACTGTGGCATCACAAAAG 1198
||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1139 TGAATCTGGAGTGTTGTAACTCGCTGATGACTTCTCTGATGCACTGTGGGATCACGAAAG 1198
Query 1199 ATATCATTGAGATGTTTGGTTTGATGGTTGATGAAGGAACTGGAATCGACGAAGTCACTC 1258
||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1199 ATATCATCGAGATGTTTGGTTTGATGATTGATGAAGGAACTGGAATCGACGAAGTTACTC 1258
Query 1259 TTTCTACTGTCCTCAAGGCTTTATCACTCTCTTTACCAGAAAGTTTACATAGCTGCACGC 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTTCTACTGTCCTCAAGGCTTTATCACTCTCTTTACCAGAAAGTTTACATAGCTGCACGC 1318
Query 1319 TTGTACATTGTTGTGCCATCAAATCTGGTTATGCAGCTGATGTTGCAGTCTCATGCTCTC 1378
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1319 TTGTACATTGCTGTGCCATCAAATCTGGTTATGCAGCTGATGTTGCAGTCTCGTGCTCTC 1378
Query 1379 TAATTGATACGTATTCAAAGAGCGGTCAGAATGAAGTATCTCGGAAGGTGTTTGATGAGC 1438
| |||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1379 TTATTGATGCGTATACAAAGAGTGGTCAGAATGAAGTATCTCGGAAGGTGTTTGATGAGC 1438
Query 1439 TTGATTCACCTAACATCTTCTGCTTGACTTCGATCATCAATGGCTATGCTAGAAATGGCA 1498
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TTGATACACCTAACATCTTCTGCTTGACTTCGATCATCAATGGCTATGCTAGAAATGGCA 1498
Query 1499 TGGGAAGAGACTGTGTTGAGATGCTGAGAGAGATGGATCAAAAGAATCTCATACCAGACG 1558
|||||| |||||||||| | ||||||||||||||||||| || |||||||||||||||||
Sbjct 1499 TGGGAACAGACTGTGTTAAAATGCTGAGAGAGATGGATCGAATGAATCTCATACCAGACG 1558
Query 1559 AAGTTACAATATTGTCGGTACTATCAGGGTGCAGTCATTCTGGGCTTGTTGAAGAAGGCG 1618
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 AAGTTACAATATTGTCTGTACTATCAGGGTGCAGTCATTCTGGGCTTGTTGAAGAAGGCG 1618
Query 1619 AGCTGGTTTTTGACTCATTGGAATTGAAGTACGGAATTTCTCCAGGAAGGAAACTCTATG 1678
||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1619 AGCTGATTTTTGACTCATTGGAATCGAAGTACGGAATTTCGCCAGGAAGGAAACTCTATG 1678
Query 1679 CATGCTTGGTGGATTTGCTAGGACGTGCTGGTTTGGTGGAAAAAGCCGAAAGGCTACTTC 1738
||||| |||||||||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 1679 CATGCATGGTGGATTTGCTAGGGCGTGCTGGTTTGGTGGAAAAAGCTGAAAGGCTGCTTC 1738
Query 1739 TTCAGGCAC-ATGGAGATGCAGACTGCATCGCGTGGAGCTCACTACTGCAGAGCTGCAGG 1797
||||||||| | ||||||||||||||| | || ||||||||| |||||||||||||||||
Sbjct 1739 TTCAGGCACGA-GGAGATGCAGACTGCGTTGCATGGAGCTCATTACTGCAGAGCTGCAGG 1797
Query 1798 ATCCATAGAAACGAAAGAATAGGAAGAAGAGCAGCAGAGGTCTTGATGGATCTTGAACCT 1857
|||||||||||||||| |||||||||||||||||| || ||||||||| |||||||||||
Sbjct 1798 ATCCATAGAAACGAAACAATAGGAAGAAGAGCAGCGGAAGTCTTGATGAATCTTGAACCT 1857
Query 1858 GAGAATTTCGCTGTTTACATTCAAGTTTCGAAATTTTACTTTGAGATCGGTGATTTTGAA 1917
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1858 GAGAATTTCGCTGTTTACATTCAGGTTTCAAAATTTTACTTTGAGATCGGTGATTTTGAA 1917
Query 1918 ATCTCCAGACAAATCAGAGAGATCGCTGCTTCACGAGAGCTCATGAGGGAGATTGCTT-C 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1918 ATCTCCAGACAAATCAGAGAGATCGCTGCTTCACGAGAGCTCATGAGGGAGATTGGTTAC 1977
Query 1977 AG 1978
||
Sbjct 1978 AG 1979
> AT1G23460.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:8327312-8329622 FORWARD LENGTH=1453
Length=1453
Score = 846 bits (458), Expect = 0.0
Identities = 551/592 (93%), Gaps = 21/592 (4%)
Strand=Plus/Plus
Query 2377 ATTGACGGAACAATAGTGGCACCAGATGAGCCCAGCAATTGGGATTCAAAGTTCCAAAGA 2436
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 452 ATTGACGGAACAATAGTGGCACCAGATGAGCCCAGCAATTGGGACTCAAAGTTCCAGAGA 511
Query 2437 ATTTGGCTCGAGTTTTCAAAACTTAAAGGGGTCGTGTTTCAAGGGAAAGGAGTTATAGAT 2496
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 512 ATTTGGCTCGAGTTTTCAAAGCTCAAAGGGGTCGTGTTTCAAGGGAAAGGAGTTATAGAT 571
Query 2497 GGTTCAGGCAGCAAATGGTGGGCTGCTTCTTGCAAGAAAAACAAG-----T-C-T----- 2544
||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 572 GGTTCAGGCAGCAAATGGTGGGCTGCTTCTTGCAAGAAAAACAAGTCTAATCCTTGCAAA 631
Query 2545 --------AA-TGCACTAACTATAGAATCTAGTTCGGGTGTGAAAGTAAGTGGCTTGACG 2595
|| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 632 AGCGCACCAACTGCACTAACTATAGAATCTAGTTCAGGTGTGAAAGTAAGTGGCTTGACA 691
Query 2596 ATCCAAAACAGCCAGCAGATGAATTTCATCATAGCAAGGTCAGATTCAGTTCGAGTCTCC 2655
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 ATCCAGAACAGCCAGCAGATGAATTTCATCATAGCAAGGTCAGATTCAGTTCGAGTCTCC 751
Query 2656 AAAGTTATGGTCTCTTCTCCAGGAGATAGTCCCAACACTGATGGCATCCATATCACTGGA 2715
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 752 AAGGTTATGGTCTCTTCTCCAGGAGATAGTCCCAACACTGATGGAATCCATATCACTGGA 811
Query 2716 TCTACCAATGTTATCCTTCAAGACTGTAAAATCGGGACAGGGGATGATTGTGTCTCCATT 2775
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 812 TCTACCAATGTTATCCTTCAAGACTGTAAAATCGGCACAGGGGATGATTGTGTCTCGATT 871
Query 2776 GTTAACGCGAGCTCGAATATAAAGATGAAGAACATTTATTGTGGACCTGGACATGGAATC 2835
|| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 872 GTGAATGCCAGCTCGAATATAAAGATGAAGAACATCTATTGTGGACCTGGACATGGAATC 931
Query 2836 AGCATTGGAAGTCTTGGGAAGGATAACACAACAGGCATTGTAACACAAGTTGTGTTGGAC 2895
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 932 AGTATTGGAAGTCTTGGGAAGGATAATACGACAGGCATTGTAACACAAGTTGTGTTGGAC 991
Query 2896 ACTGCCTTATTGAGAGAGACAACTAATGGACTCAGAATCAAAACATATCAGG 2947
||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 992 ACTGCCTTATTGAGAGAAACAACTAATGGACTCAGAATAAAAACATATCAGG 1043
Score = 568 bits (307), Expect = 2e-160
Identities = 347/367 (95%), Gaps = 0/367 (0%)
Strand=Plus/Plus
Query 3039 GATGCAAGATGTTGCAAACCCGATACTCATTGATCAGTTCTACTGTGATTCTCCAACTAC 3098
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 GATGCAAGACGTCGCAAACCCGATACTCATTGATCAGTTCTACTGTGATTCTCCAACTAC 1146
Query 3099 ATGTCAAAACCAGACCTCGGCAGTTAAAATCAGCCAGATAATGTACCGGAACATAACTGG 3158
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1147 ATGTCAAAACCAGACCTCGGCGGTTAAAATCAGCCAGATAATGTACCGGAACATAACCGG 1206
Query 3159 GACAACCAAAAGTGAGAAGGCCATCAAATTTGCGTGCAGCGACACTGTCCCTTGCAGCCA 3218
|||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1207 GACAACCAAAAGTGCGAAAGCCATCAAATTTGCGTGCAGCGACACAGTCCCTTGCAGCCA 1266
Query 3219 CATTGTCCTCAATAATGTTAATCTTGAAGGCAAAGACGGTCAAGTCGAAGCGTACTGTAA 3278
||| |||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1267 CATAGTCCTCAACAATGTGAATCTTGAAGGCAACGACGGTCAAGTCGAAGCTTACTGTAA 1326
Query 3279 CTCAGCTGAAGGATTTGGGTATGGTGTGATTCATCCATCAGCGGATTGTCTCTACTCGCA 3338
||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1327 TTCAGCCGAAGGTTTTGGGTATGGAGTGATTCATCCATCAGCGGACTGTCTCTACTCGCA 1386
Query 3339 CGACGACAAGGGCTTGGACCAGACTCGCAAGTCAGAGGATGCCGAGACTGGCCACGACGA 3398
|||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||
Sbjct 1387 CGACGACAAGGGCTTGGACCAGACTCACAAGTCGGAGGAAGCCGAGACTGGCCACGACGA 1446
Query 3399 GCTTTGA 3405
|||||||
Sbjct 1447 GCTTTGA 1453
Score = 473 bits (256), Expect = 4e-132
Identities = 300/321 (93%), Gaps = 3/321 (1%)
Strand=Plus/Plus
Query 1972 GCTTCAGGGAAAATGGTGTACACCGATCTCGACATCCTTGAGGAGCTTGAGAACTTTGAT 2031
||| ||||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||||
Sbjct 131 GCTGCAGGGAAGATGGTGTACACAGATCTTGACATTCTTGACGAGCTTGAGAACTTTGAT 190
Query 2032 GTATTGTTAGATGATGATGA--A-ACAAAGCTCTTTGATTTGCCTTCATTCACAAGCCGA 2088
||| || ||||||||||||| | ||||||||||| |||| ||| ||||||||||||||
Sbjct 191 GTACTGGTAGATGATGATGATGATACAAAGCTCTTGGATTGGCCATCATTCACAAGCCGG 250
Query 2089 CATTCTGGTAAGAATCTGGTGAATGTGGATACATTCGGTGCAGCTGGAGATGGAGTTTCT 2148
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 251 CATTCTGGTAAAAATCTGGTGAATGTTGATACATTCGGTGCAGCTGGAGATGGAGTTTCT 310
Query 2149 GATGATACTCAGGCATTCATAAGCGCATGGAGCAAAGCCTGCGGTACATCAAAATCTGTG 2208
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 311 GATGATACTCAGGCATTCGTAAGCGCATGGAGCAAAGCCTGCAGTACATCAAAATCTGTG 370
Query 2209 TTTCTGGTTCCAGAAGGACGGCGATATTTAGTAAATGCAACAAAGTTCAATGGTCCATGT 2268
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 371 TTTCTGGTTCCAGAAGGACGTCGATATTTAGTAAACGCAACAAAGTTCAATGGTCCATGT 430
Query 2269 GAACAAAAGTTGATCATTCAG 2289
|||||||||||||||||||||
Sbjct 431 GAACAAAAGTTGATCATTCAG 451
> AT1G23470.1 | Symbols: | pseudogene, polygalacturonase (pectinase),
putative, similar to polygalacturonase (Cucumis sativus)
GI:6624205; contains Pfam profiles PF00461: Signal peptidase
I, PF00295: Polygalacturonase (pectinase); blastp match
of 69% identity and 4.8e-49 P-value to GP|6624205|dbj|BAA88472.1||AB035890
polygalacturonase {Cucumis sativus} | chr1:8331297-8332136
FORWARD LENGTH=840
Length=840
Score = 257 bits (139), Expect = 4e-67
Identities = 250/297 (84%), Gaps = 33/297 (11%)
Strand=Plus/Plus
Query 3109 CAGACCTCGGCAGTTAAAATCAGCCAGATAATGTACCGGAACATAACTGGGACAACCAAA 3168
|||||||| || |||||||||||||| ||||||||||||||| | | |||||||
Sbjct 577 CAGACCTCCGCGGTTAAAATCAGCCATATAATGTACCGGAAC---A-T-----AACCAAA 627
Query 3169 AGTGAGAAGGCCATCAAATTTGCGTGCAGCGACACTGTCCCTTGCAGCCACATTGTCCTC 3228
|||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 628 AGTGCGAAAGCCATCAAATTTGCGTGCAGCGACACAGTCCCTTGCAGCCACATTGTCCTC 687
Query 3229 AATAATGTTAATCTTGAAGGCAAAGACGGTCAAGTCGAAGCGTACTGTAACTCAGCTGAA 3288
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 688 AACAATGTGAATCTTGAAGGCAAAGACGGTCAAGTCGAAGCGTACTGTAATTCAGCTGAA 747
Query 3289 GGATTTGGGTATGGTGTGATTCATCCATCAGCGGATTGTCTCTACTCGCACGACGACAAG 3348
|||||||||||||| || | | | || || | | | ||||| | |||
Sbjct 748 GGATTTGGGTATGGAGTC-T--A-C--TC-GC--A----C---A-----ACGAC-A-AAG 784
Query 3349 GGCTTGGACCAGACTCGCAAGTCAGAGGATGCCGAGACTGGCCACGACGAGCTTTGA 3405
| |||||||||||||| |||||||||||| ||||||||||||||||| |||||||||
Sbjct 785 G-CTTGGACCAGACTCACAAGTCAGAGGAAGCCGAGACTGGCCACGATGAGCTTTGA 840
Score = 183 bits (99), Expect = 7e-45
Identities = 147/168 (88%), Gaps = 11/168 (7%)
Strand=Plus/Plus
Query 2835 CAGCATTGGAAGTCTTGGGAAGGATAACACAACAGGCATTGTAACACAAGTTGTGTTGGA 2894
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 173 CAGCATTGAAAGTCTTGGGAAGGATAACACGACAGGCATTGTAACACAAGTTGTCTTGGA 232
Query 2895 CACTGCCTTATTGAGAGAGACAACTAATGGACTCAGAATCAAAACATATCAGGTAAA-AA 2953
|||||| || |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 233 CACTGCGTTGTTGAGAGAGACAACTAATGGACTCAGAATCAAAACATACCAGGTAAACAA 292
Query 2954 --A---GCTT---CAG-TCTTTAAGAAAAACTTCGATTTGGCTAGATC 2992
| |||| || ||||||| |||| ||||||||||| | ||||
Sbjct 293 CTAAAAGCTTGATCAAATCTTTAATAAAA-CTTCGATTTGGTTTGATC 339
> AT1G70500.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:26566579-26568729 REVERSE LENGTH=1407
Length=1407
Score = 217 bits (117), Expect = 7e-55
Identities = 262/330 (79%), Gaps = 18/330 (5%)
Strand=Plus/Plus
Query 1972 GCTTCAGGGAAAATGGTGTACACCGATCTCGACATCCTTGAGG-AGCTTGAGAACTTTGA 2030
||| |||| |||||| ||| || || || ||||| |||| || ||||||||||| | ||
Sbjct 58 GCTACAGGAAAAATGTTGTTCAAGGAACTTGACATTCTTG-GGAAGCTTGAGAACCTCGA 116
Query 2031 TGTATTGTTA-GATG--A-TGATGA--AACAAAGC-TCTTTGATTTGC-CTTCATTCACA 2082
|||| | | |||| | ||| || | | | |||||||||| | | || || |||
Sbjct 117 TGTA-CCTGAGGATGATATTGAGGATGATGTGACCTTCTTTGATTT-CTCGTCGTTTACA 174
Query 2083 AGCCGACATTCTGGTAAGAATCTGGTGAATGTGGATA-CATTCGGTGCAGCTGGAGATGG 2141
|||| | |||||||||||||||||||||||||||||| | || |||| ||||||||||
Sbjct 175 AGCCAATATTCTGGTAAGAATCTGGTGAATGTGGATAGC-TTTAATGCATCTGGAGATGG 233
Query 2142 AGTTTCTGATGATACTCAGGCATTCATAAGCGCATGGAGCAAAGCCTGCGGTACATCAAA 2201
|||||||||||||||||||||||| ||||| || |||| || |||||| | || ||||
Sbjct 234 AGTTTCTGATGATACTCAGGCATTTATAAGAGCTTGGACCATGGCCTGCTCTGCACCAAA 293
Query 2202 ATCTGTGTTTCT-GGTTCCAGAAGGACGGCGATATTTAGTAAATGCAAC-AAAGTTCAAT 2259
||||| ||| | ||||||| ||||||| | |||||||||||||| || ||| ||| ||
Sbjct 294 CTCTGT-TTTATTGGTTCCACAAGGACGTAGCTATTTAGTAAATGCGACGAAA-TTCGAT 351
Query 2260 GGTCCATGTGAACAAAAGTTGATCATTCAG 2289
||||||||| || |||| ||||||||||||
Sbjct 352 GGTCCATGTCAAGAAAAATTGATCATTCAG 381
> AT5G19020.1 | Symbols: MEF18 | mitochondrial editing factor
18 | chr5:6352771-6354828 REVERSE LENGTH=2058
Length=2058
Score = 65.8 bits (35), Expect = 3e-09
Identities = 52/60 (87%), Gaps = 1/60 (2%)
Strand=Plus/Plus
Query 501 GAAGTTGTTTGATGAAATGCCTGAGAGAAATTTAGCTGTTTGCAATTTGCTGTTGAAATG 560
||||||||||||||||||||||||||||||||||| | ||| || || |||| |||||
Sbjct 684 GAAGTTGTTTGATGAAATGCCTGAGAGAAATTTAGTTACTTGGAACGTGATGTT-AAATG 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 169463933454
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5