BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313224
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23580.1 | Symbols: | Domain of unknown function DUF220 | c... 673 0.0
AT1G23570.2 | Symbols: | Domain of unknown function (DUF220) |... 307 1e-82
AT1G23620.1 | Symbols: | pseudogene, hypothetical protein | ch... 261 8e-69
AT1G23590.1 | Symbols: | Domain of unknown function DUF220 | c... 228 8e-59
AT1G23690.1 | Symbols: | Domain of unknown function DUF220 | c... 204 1e-51
> AT1G23580.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8357446-8358805 REVERSE LENGTH=1002
Length=1002
Score = 673 bits (364), Expect = 0.0
Identities = 454/497 (91%), Gaps = 8/497 (2%)
Strand=Plus/Plus
Query 1 ATGGGTGTATTTTCTGCATTTGGTGCAAGGATCAATCAGAACTCTCAACAGCCTCTTGAG 60
|||||||||||| |||| ||||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 100 ATGGGTGTATTTCCTGCGTTTGGAGCATGGATCAATCAGAATTCTCAACAGCCTCTTGAG 159
Query 61 GCTGATCCCAAGAGCTCTGAAAATGTTGAATCTAAGTCGGTGTCAGAGATGGATAAT-G- 118
| ||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
Sbjct 160 GAAGATCCCAAGAGCTCTGAGCATGTTGAATCTAAGTCGGCATCAGAGATGGATAATGGT 219
Query 119 ---G-TAAGATGAAGAGATATTATGACGAAGATGAGTGGGAGAGGCAAGATCAACTTTGG 174
| ||||||||| | ||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 220 CCTGCTAAGATGAAAAAATACTATGACGAAGATGAGTGGGAGAGGCAAGATAAACTTTGG 279
Query 175 ACAGCTGCAGAGAAGAAGCATCCATGGAAAGTTGCCCCTCCTAAGGTTAAGGTGACAACA 234
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 280 ACAGCTGCAGAGAAGAAGCATCCATGGAAAGATGCCCCTCCTAAGGTTAAGGTGACAACA 339
Query 235 AAAAAGGGTATTTGCCATATACACATAGAATTGACATTGGGGTTGCATCCTGATGGTGTC 294
||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |||
Sbjct 340 AAAAAGGGTATATGCCATATGCACATAGAATTGACATTGGGGTTGCCTCCTGATGGAGTC 399
Query 295 TTCGAACTTTTCACTAATCCACACAACGGACCAAACACCGAACCACTTTTGAAAAGCAAA 354
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 400 TTCGAACTTTTCACTAATCCACATAACGGACCAAACACCGAACCACTTCTGAAAAGCAAA 459
Query 355 TCAAGAAAGGTTTTGAAAGAGGATGGACCGAGCCAGATCGCTAAGGTGGAA-AAAGTTTT 413
||||||||||||||||| || ||||||||||| |||||||| |||||| || |||| | |
Sbjct 460 TCAAGAAAGGTTTTGAAGGACGATGGACCGAGGCAGATCGCGAAGGTG-AAGAAAGCTGT 518
Query 414 GGCCTGGAACTTCAGTGGGAGGTCTTTTTCCGTCCCCATAAGTCTAACTGTCGATGAAAA 473
||||||||||||||||||||||||| || | ||||||||||||||| ||||||||||||
Sbjct 519 GGCCTGGAACTTCAGTGGGAGGTCTATTGCTATCCCCATAAGTCTAATTGTCGATGAAAA 578
Query 474 CCGAAAAGATCTTACAG 490
| ||| |||||||||||
Sbjct 579 CAGAAGAGATCTTACAG 595
Score = 486 bits (263), Expect = 1e-136
Identities = 316/342 (92%), Gaps = 2/342 (1%)
Strand=Plus/Plus
Query 542 TGATGATGATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCACTATACGTAGATTCAG 601
||||| | |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 617 TGATGTTCATGAAAGTATTCGAGGGTAGCTATAAAGTGGAGCCTGTATACGTAGATTCAG 676
Query 602 TACGGTTATGCAAGAACAAGGAGCCGAAGAGTGTAGAAGTATAC-AGAAAATGTAGCGGT 660
|||| ||||||||||||||| |||||||||||||||| | |||| || |||||||| ||
Sbjct 677 TACGCTTATGCAAGAACAAGAAGCCGAAGAGTGTAGATGAATACAAG-AAATGTAGTGGC 735
Query 661 GGACAAGGAAAGATTGCATCGAAAGTGACAATGGACCAATACTTTCAGCCATATCCTCCT 720
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 736 GGACAAGGAAAGATTGCATCGAAAGTGACAATGGACCAATATTTTCAGCCATATCCTCCT 795
Query 721 TTTAATCTGCCGCCACTATCTTGGTTCATTCGTGATATCACCATCAAGAATACCAAAAAT 780
|||||||| |||||| | |||||||||||||||||||||||||||||||||||||| | |
Sbjct 796 TTTAATCTACCGCCATTTTCTTGGTTCATTCGTGATATCACCATCAAGAATACCAAGAGT 855
Query 781 GTGCTAGACAGACTTCAACTTTGGGGTTTCAGTATTCGAAATCCAGGTGTAATCATGTCA 840
|||||||| ||||||||| |||| ||||||||||||||||||| |||||||||||||||
Sbjct 856 GTGCTAGAGAGACTTCAAAGTTGGAGTTTCAGTATTCGAAATCCGGGTGTAATCATGTCA 915
Query 841 ACCAACAAACATGGAAAAACAGAAATTTCTCCTAAACATTAA 882
|||||||||||||||||||||||| ||||||||||||| |||
Sbjct 916 ACCAACAAACATGGAAAAACAGAAGTTTCTCCTAAACAGTAA 957
> AT1G23570.2 | Symbols: | Domain of unknown function (DUF220)
| chr1:8354806-8356364 REVERSE LENGTH=1067
Length=1067
Score = 307 bits (166), Expect = 1e-82
Identities = 268/316 (85%), Gaps = 12/316 (4%)
Strand=Plus/Plus
Query 548 TGATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCACTATACGTAGATTCAGTACGGT 607
|||||||||| ||||| |||||||||| ||||||||||||||| |||||||||| ||| |
Sbjct 410 TGATGAAAGTTTTCGAAGGTAGCTATAGAGTGGAGCCACTATATGTAGATTCAGAACGCT 469
Query 608 TATGCAAGAACAAGGAGCCGAAGAGTGTAGAAGTATACAGAAA-ATGTAGCGGTGGACAA 666
| ||||| |||| ||||||||||||| | || ||||| ||| ||||||||||||||||
Sbjct 470 TGTGCAATAACATGGAGCCGAAGAGTCCGGCAGAATACA-AAAGATGTAGCGGTGGACAA 528
Query 667 GGAAAGATTGCATCGAAA-GTGACAATGGACCAATACTTTCAGCCATATCCTCCTTTTAA 725
|||| ||||||||| ||| ||||||||| ||||||||||| |||||||||||||||||||
Sbjct 529 GGAAGGATTGCATC-AAAGGTGACAATGAACCAATACTTTAAGCCATATCCTCCTTTTAA 587
Query 726 TCTGCCGCCACTATCTTGGTTCATTCGTGATATCACCATCAAGAATACCAAAAATGTGCT 785
|||||||||||||||||||| |||||| | ||||||||||||| ||||||| || |||
Sbjct 588 TCTGCCGCCACTATCTTGGTACATTCGAAAGGTCACCATCAAGAACACCAAAACTGCGCT 647
Query 786 AGACAG-ACTTCAA-CTTTGGGGTTTCAGTATTCGAAATCCAGGTGTAATCA-TGTCAAC 842
|| | ||||||| ||| ||||| | | ||||||||||||||| | | | | |||||
Sbjct 648 -GAAAACACTTCAAACTT-GGGGTATAAACCTTCGAAATCCAGGTGCAGTGACT-TCAAC 704
Query 843 CA-ACAAACATGGAAA 857
| ||||| |||||||
Sbjct 705 -AGACAAATATGGAAA 719
> AT1G23620.1 | Symbols: | pseudogene, hypothetical protein |
chr1:8364662-8366449 REVERSE LENGTH=1788
Length=1788
Score = 261 bits (141), Expect = 8e-69
Identities = 199/227 (88%), Gaps = 3/227 (1%)
Strand=Plus/Plus
Query 542 TGATGATGATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCACTATACGTAGATTCAG 601
||||| | |||||||| ||||| |||| ||||||||||||||||||||| ||||||||||
Sbjct 1416 TGATGTTCATGAAAGTATTCGAAGGTAACTATAAAGTGGAGCCACTATATGTAGATTCAG 1475
Query 602 TACGGTTATGCAAGAACAAGGAGCCGAAGAGTGTAGAAGTATACAGAAA-ATGTAGCGGT 660
|||| || ||||| || |||||||| |||||| | ||| ||||| ||| |||||| ||
Sbjct 1476 TACGCTTGTGCAATAATAAGGAGCCAAAGAGTTTTCAAGAATACA-AAACATGTAGTGGC 1534
Query 661 GGACAAGGAAAGATTGCATCGAAAGTGACAATGGACCAATACTTTCAGCCATATCCTCCT 720
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1535 GGACAAGGAAGGATTGCATCGAAAGTAACAATGGACCAATACTTTCAGCCATATCCTCCT 1594
Query 721 TTTAA-TCTGCCGCCACTATCTTGGTTCATTCGTGATATCACCATCA 766
||||| ||| || ||| | ||||||||||| |||||||| |||||||
Sbjct 1595 TTTAAATCTACCACCATTTTCTTGGTTCATCCGTGATATAACCATCA 1641
> AT1G23590.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8359125-8360645 REVERSE LENGTH=1093
Length=1093
Score = 228 bits (123), Expect = 8e-59
Identities = 192/224 (86%), Gaps = 9/224 (4%)
Strand=Plus/Plus
Query 550 ATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCACTATACGTAGATT-C-AGTACGGT 607
|||||||||||||||||||||||||||||||||||| | || ||||||| | || || |
Sbjct 602 ATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCAATTTATGTAGATTTCGAG--CGCT 659
Query 608 TATGCAAGAACAAGGAGCCGAAGAGTGTAGAAGTATACAGAAAATGTAGCGGTGGACAAG 667
| ||||| | |||||||| |||||| ||||| ||||| ||||||||||||||| ||||
Sbjct 660 TGTGCAATCAGAAGGAGCCAAAGAGTCCAGAAGAATACAAAAAATGTAGCGGTGGGCAAG 719
Query 668 GAAAGATTGCATCGAAAGTGACAATGGACCAA-TACTTTCAGCCATATCCTCCTTTTAAT 726
||||||||||||| |||||||||||||||||| || ||||||||||||||| |||||||
Sbjct 720 GAAAGATTGCATCAAAAGTGACAATGGACCAAATATTTTCAGCCATATCCTATTTTTAAT 779
Query 727 CTGCCGCCACTATCTTGGTTCATTCGT-GATATCACCATCAAGA 769
||||||| | ||||||| ||||||| | | |||||||||||
Sbjct 780 TTGCCGCCG-T-TCTTGGTACATTCGTAGG-ACCACCATCAAGA 820
> AT1G23690.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8377262-8378769 REVERSE LENGTH=1128
Length=1128
Score = 204 bits (110), Expect = 1e-51
Identities = 179/211 (85%), Gaps = 10/211 (5%)
Strand=Plus/Plus
Query 580 GAGCCACTATACGTAGATTCAGTACGGTTATGCAAGAACAAGGA-GCCGAAGAGT-GTAG 637
|||||||||||||||||||||| ||| || |||||| ||| | | |||||||||| | ||
Sbjct 709 GAGCCACTATACGTAGATTCAGAACGCTTGTGCAAGGACA-GAAAGCCGAAGAGTCG-AG 766
Query 638 AAGTATACAGAAA-ATGTAGCGGTGGACAAGGAAAGATTGCATCGAAAGTGACAATGGAC 696
||| ||||| ||| ||||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct 767 AAGAATACA-AAAGATGTAGCGGCGGAGAAGGAAAGGTTGCATCGAAAGTGACAATGGAC 825
Query 697 CAATACTTTCAGCCATATCCTCCTT-TTAATCTGCCGCCACTATCTTGGTTCATTCGTGA 755
|||||||| || || ||| || || ||||||| || ||||| ||||||| ||||||||
Sbjct 826 CAATACTTCCAACCTTATTTTC-TTCTTAATCTACCACCACTTTCTTGGTACATTCGTGG 884
Query 756 TATCACCATCAAGAAT-ACCAAAAATGTGCT 785
||||||||||| || ||||||||| ||||
Sbjct 885 GATCACCATCAA-AACCACCAAAAATCTGCT 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43050663979
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5