BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313228
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23690.1 | Symbols: | Domain of unknown function DUF220 | c... 1236 0.0
AT1G23660.1 | Symbols: | Domain of unknown function DUF220 | c... 440 9e-123
AT1G23580.1 | Symbols: | Domain of unknown function DUF220 | c... 387 1e-106
AT1G23640.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 180 2e-44
> AT1G23690.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8377262-8378769 REVERSE LENGTH=1128
Length=1128
Score = 1236 bits (669), Expect = 0.0
Identities = 772/823 (94%), Gaps = 2/823 (0%)
Strand=Plus/Plus
Query 1 ATGAATGTATTTCCAAGATTTGTTGGCTGGATCAACCAGAACCTGCAACAACAGCCTGTT 60
|||| |||||||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 136 ATGAGTGTATTTCGAAGATTTGTTGGCTGGATCAACCAGAACCTACAACAACAGCCTCTT 195
Query 61 CAGGATGAGTCCAAGAGATCTGAGAATGTCGACTCTAATTCAGTGTCAGAGAAAGATACT 120
|||||||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||
Sbjct 196 AAGGATGAGTCCAAGAGATCTGAGAATGTTGACTCTAATTCAGCGACAGAGAATGATACT 255
Query 121 AATAAACAGGAATTTTATTATGACAAAGCTGAGGCTAAGAAGCAAGGAAAACTTTGGAGA 180
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 AATAAACGGGCATTTTATTATGACAAAGCTGAGGCTAAGAAGCAAGGAAAACTTTGGAGA 315
Query 181 GCTGCAGAGAAGAAGAAACCATGGTATGATGCTCCTGCTAAAGTGAAGGTGACAACAAAG 240
|||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||
Sbjct 316 GCTGCAGAGAAGAAGAAACCATGGTATGATGCTCCTCCTAAGGTCAAGGTGACAACAAAA 375
Query 241 AAGGGTCTTTGCCACATGCACATAGAATTGACAGTAGGATTGCCTCCTGAAGGAGTCTAC 300
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 376 AAGGGTCTTTGCCACATGCACATAGAGTTGACAGTAGGATTGCCTCCGGAAGGGGTCTAT 435
Query 301 GATTTGTTCGCTAATCCAAACGACTTTCCATTCTTCAGGATTGATAATGAGACTGGGCGC 360
||||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||
Sbjct 436 GATTTGTTCGCTAATCCGAACGACTTTCCATTCTTCAGGATCGACAACGAGACTGGGCGC 495
Query 361 GAACTTTTGGAAAACAAATCAAGAAAGGTTTTGATGAAGGATGGACCGAGGCAGATCGTG 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct 496 GAACTTTTGGAAAACAAATCAAGAAAGGTTTTGATGAAAGATGGACCGAGGCAGAGCGCG 555
Query 421 CAGTTGGAGAAAGCTGTGACCTGGGACTTTCTTTTGTGGTGTGGAGCTTTTCCGTTTACT 480
| ||||||||||||| ||||||||||| |||||| |||||||||||||||||| ||||||
Sbjct 556 CGGTTGGAGAAAGCTCTGACCTGGGACGTTCTTTGGTGGTGTGGAGCTTTTCCATTTACT 615
Query 481 CTAATTGTTGATGaaaaccaaaaagattttagagcaaaatataagaaaaagaaaaTGATG 540
|||||||||||||||||||||||| | ||||||| || ||||| |||| ||||||||| |
Sbjct 616 CTAATTGTTGATGAAAACCAAAAAAACTTTAGAGGAAGATATATGAAAGAGAAAATGAAG 675
Query 541 TTCATGAAAGT-TTTTGAGGGTAAATGGAAAATAGAGTCACTGTACGTAGATTCAGAACG 599
|| |||||| | ||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 676 TTTATGAAA-TATTTTGAGGGTAAATGGAAAATAGAGCCACTATACGTAGATTCAGAACG 734
Query 600 CTTGTGCAAGGACAGAGAGCCGAAGAGTCGAGAAGAATACAAAAGATGTAGTGGCGGACA 659
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
Sbjct 735 CTTGTGCAAGGACAGAAAGCCGAAGAGTCGAGAAGAATACAAAAGATGTAGCGGCGGAGA 794
Query 660 AGGAAAAGTTGCATCGAAAGTGACAATGGACCAATACTTCCAACCTTATTTTCTTCTTAA 719
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 AGGAAAGGTTGCATCGAAAGTGACAATGGACCAATACTTCCAACCTTATTTTCTTCTTAA 854
Query 720 TATACCACCGCTTTCTTGGTACATTCGTGGGATCACCATCAAAACCACCAAAAAACTGCT 779
| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 855 TCTACCACCACTTTCTTGGTACATTCGTGGGATCACCATCAAAACCACCAAAAATCTGCT 914
Query 780 CAAATTGATTCAAAATGCAAGTATCATGTTCCGAGACGCTTGA 822
|| ||||||||||||||||||||||||||||||||||||||||
Sbjct 915 CATATTGATTCAAAATGCAAGTATCATGTTCCGAGACGCTTGA 957
> AT1G23660.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8371609-8372845 REVERSE LENGTH=868
Length=868
Score = 440 bits (238), Expect = 9e-123
Identities = 523/656 (80%), Gaps = 37/656 (6%)
Strand=Plus/Plus
Query 164 AAGGA-AAACTTTGGAGAGCTGCAGA-GAAGAAGAAACCATGGTATGATGCTCCTGCTAA 221
||||| ||| |||||||||||||||| ||| ||| | |||||||||||||||||||||||
Sbjct 213 AAGGAGAAA-TTTGGAGAGCTGCAGAGGAA-AAGCATCCATGGTATGATGCTCCTGCTAA 270
Query 222 AGTGAAGGTGACAACAAAGAAGGGTCTTTGCCACATGCACATAGAATTGACAGTAGGATT 281
||||||||||||||||| || ||||||||||| ||| |||||||||| | | | |||||
Sbjct 271 GGTGAAGGTGACAACAAAAAATGGTCTTTGCCATATGAACATAGAATTTAAACTGGGATT 330
Query 282 GCCTCCTGAAGGAGTCTACGATTTGTTCGCTAATCCAAACGACTTTCCATTCTTCAGGAT 341
|||||||||||||||||||| ||||| ||||||||||| ||| |||| |||||| |
Sbjct 331 ACCTCCTGAAGGAGTCTACGAGATGTTCACTAATCCAAACAACTATCCAGTCTTCAAAAA 390
Query 342 TGATAATGAGACTGGGCGCGAACTTTTGGAAAACAAATCAAGAAAGGTTTTGATGAAGGA 401
|| || | | | |||||| ||| | ||||||||||||||||||| ||||||| ||| |
Sbjct 391 GGACAA-G-G-CCGGGCGCCAACGTCTGGAAAACAAATCAAGAAAAGTTTTGAAGAAAAA 447
Query 402 TGGACCGAGGCAGATCGTGCAGTTGGAGAAAGCTGTG-ACCTGGGACTTTCTTTT-GTGG 459
|||||||||||||| | | || |||| |||| | || | |||| |||| ||||| |
Sbjct 448 TGGACCGAGGCAGACCACGGAGATGGAAAAAGATTTGTA-CTGGAACTTCCTTTTCAT-A 505
Query 460 TGTGGAGCTTTTCCGTTTAC-TCTAATTGTTGATGaaaaccaaaaag-attttagagcaa 517
| |||| | ||| ||| |||| || | |||||||| | | ||| || | | |||||
Sbjct 506 TCCAGAGCAATCCCG-ATACATCTAGTTATCGATGAAAATC-ATAAGAATCTCACAGCAA 563
Query 518 aatataagaaaaagaaaaTGATGTTCATGAAAGTTTTTGAGGGTAAATGGAAAATAGAGT 577
|||||| || |||||| |||||||| ||||||| || ||||||| |||||| | | |
Sbjct 564 AATATAGGACAAAGAATATGATGTTTTTGAAAGTGTTGGAGGGTAGCTGGAAAGTGGTGC 623
Query 578 C--ACTGTACGTAGATTCA-GAACGCTTGTGCAAGGAC-AGAG-AGCCGAAGAGTCGAGA 632
| ||| | ||||| ||| |||||||||||||| | | || | |||||| ||||||||
Sbjct 624 CAGACT-T-TGTAGA-TCAGGAACGCTTGTGCAA-GTCAAG-GTTGCCGAAAAGTCGAGA 678
Query 633 AGAATACAAAAGATGTAGTGGCGGACAAGGAAAAGTTGCATCGAAAGTGACAATGGACCA 692
||||||||||||||||||||| ||||||||||| |||| || || ||||| ||||| ||
Sbjct 679 AGAATACAAAAGATGTAGTGGTGGACAAGGAAAGGTTGGGTCCAAGGTGACCATGGAGCA 738
Query 693 -ATACTTCCAA-CCTTATTTTCTTCTTAATATACCACCGCTTTCTTGG-TACATTCGTGG 749
|| ||| || |||| | |||||||||| | |||||| |||||||| || || |||||
Sbjct 739 GAT-CTTT-AAGCCTTCTCCTCTTCTTAATCTGCCACCGGTTTCTTGGATA-ATCCGTGG 795
Query 750 GATCACCATCAAAACCACCAAAAAACTGCTC-AA-ATTGATTC-AAAATGCAAGTA 802
||| ||||||||||||||||| | |||||| || || |||| |||| ||| |||
Sbjct 796 GATTACCATCAAAACCACCAAGATTCTGCTCGAAGAT--ATTCGAAAA-GCAGGTA 848
> AT1G23580.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8357446-8358805 REVERSE LENGTH=1002
Length=1002
Score = 387 bits (209), Expect = 1e-106
Identities = 584/756 (77%), Gaps = 62/756 (8%)
Strand=Plus/Plus
Query 28 TGGATCAACCAGAACCTGCAACAACAGCCTGTTCAGGATGAGT-CCAAGAGATCTGAGAA 86
|||||||| ||||| | | ||||||||| || |||| || | ||||||| |||||| |
Sbjct 127 TGGATCAATCAGAA--TTC-TCAACAGCCTCTTGAGGAAGA-TCCCAAGAGCTCTGAGCA 182
Query 87 TGTCGACTCTAATTCAGTGTC--AGA--GA-AA-GATACTAATAAACA-GGAATTTTATT 139
||| || ||||| || | || ||| || || | | || | || | | || || |
Sbjct 183 TGTTGAATCTAAGTCGGCATCAGAGATGGATAATGGTCCTGCT-AAGATGAAAAAATACT 241
Query 140 ATGACAAAGCTGAG-GCTAAGAAGCAAGGA-AAACTTTGGAGAGCTGCAGAGAAGAAGAA 197
||||| ||| |||| | ||| |||| || |||||||||| |||||||||||||||| |
Sbjct 242 ATGACGAAGATGAGTG-GGAGAGGCAA-GATAAACTTTGGACAGCTGCAGAGAAGAAGCA 299
Query 198 ACCATGGTATGATGCTCCTGCTAAAGTGAAGGTGACAACAAAGAAGGGTCTTTGCCACAT 257
|||||| | ||||| ||| |||| || |||||||||||||| |||||| | ||||| ||
Sbjct 300 TCCATGGAAAGATGCCCCTCCTAAGGTTAAGGTGACAACAAAAAAGGGTATATGCCATAT 359
Query 258 GCACATAGAATTGACAGTAGGATTGCCTCCTGAAGGAGTCTACG-ATTTGTTCGCTAATC 316
|||||||||||||||| | || ||||||||||| ||||||| || | || ||| ||||||
Sbjct 360 GCACATAGAATTGACATTGGGGTTGCCTCCTGATGGAGTCTTCGAACTT-TTCACTAATC 418
Query 317 CAAACGACTTTCCATTCTTCAGGATTGATAATGAGACTGGGCGCGAACTTTTGGAAAA-C 375
| || | | | | ||| || | || | | | |||| | ||||| |
Sbjct 419 C--AC-A---T--A----AC-GGA---CCAA--ACACCGAAC-C--ACTTCT-GAAAAGC 456
Query 376 AAATCAAGAAAGGTTTTGATGAAGGATGGACCGAGGCAGATCGTGCAGTTGGAGAAAGCT 435
||||||||||||||||||| | | ||||||||||||||||||| | || || ||||||||
Sbjct 457 AAATCAAGAAAGGTTTTGAAGGACGATGGACCGAGGCAGATCGCGAAGGTGAAGAAAGCT 516
Query 436 GTGACCTGGGACTTTC-TTTTGTGGTGTGGAGCTTTTCCGTTTACTCTAATTGTTGATGa 494
||| ||||| || ||| | | ||| | ||| | || | | ||||||||| |||||
Sbjct 517 GTGGCCTGGAAC-TTCAGTGGGAGGTCTATTGCTATCCCCATAAGTCTAATTGTCGATGA 575
Query 495 aaacca-aaaagattttagagcaaaatataagaaaa-agaaaaTGATGTTCATGAAAGTT 552
||| || || |||| ||| ||| |||||||| |||| ||||||||||||||||||||||
Sbjct 576 AAA-CAGAAGAGATCTTACAGCGAAATATAA-AAAAGAGAAAATGATGTTCATGAAAGTA 633
Query 553 TTTGAGGGTAAATGGAAAATAGAGTCACTG--TACGTAGATTCAGAACGCTTGTGCAAGG 610
|| ||||||| | ||| | ||| | ||| ||||||||||||| |||||| ||||||
Sbjct 634 TTCGAGGGTAGCTATAAAGTGGAG-C-CTGTATACGTAGATTCAGTACGCTTATGCAAGA 691
Query 611 AC-AGAGAGCCGAAGAGTCG-AGAAGAATACAA-AAGATGTAGTGGCGGACAAGGAAAAG 667
|| ||| ||||||||||| | ||| |||||||| || |||||||||||||||||| ||||
Sbjct 692 ACAAGA-AGCCGAAGAGT-GTAGATGAATACAAGAA-ATGTAGTGGCGGACAAGG-AAAG 747
Query 668 -TTGCATCGAAAGTGACAATGGACCAATACTTCCAACCTTATTTTC-TTCTTAATATACC 725
|||||||||||||||||||||||||||| || || || ||| || || ||||| ||||
Sbjct 748 ATTGCATCGAAAGTGACAATGGACCAATATTTTCAGCCATATCCTCCTT-TTAATCTACC 806
Query 726 ACCGCTTTCTTGGTACATTCGTGGGATCACCATCAA 761
|| ||||||||| |||||||| |||||||||||
Sbjct 807 GCCATTTTCTTGGTTCATTCGTGATATCACCATCAA 842
> AT1G23640.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED
DURING: 4 anthesis, petal differentiation and expansion
stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein
match is: Domain of unknown function DUF220 (TAIR:AT1G23660.1);
Has 270 Blast hits to 130 proteins in 12 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
270; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:8367170-8370280 REVERSE LENGTH=1275
Length=1275
Score = 180 bits (97), Expect = 2e-44
Identities = 190/234 (81%), Gaps = 10/234 (4%)
Strand=Plus/Plus
Query 1 ATGAATGTATTTCCAAGATTTGTTGGCTGGATCAACCAGAACCTGCAACAACAGCCTGTT 60
|||| ||||||||| |||||| |||||||||||| |||||| | | ||||||||| |
Sbjct 1 ATGAGTGTATTTCCTGGATTTGGTGGCTGGATCAATCAGAACAT-C--CAACAGCCTCCT 57
Query 61 CAGGATGAGTCCAAGAGATCTGAGAATGTCGACTCTAATTCAGTGTCAGAGAAAGATACT 120
||| |||||||| ||||||| ||||||| | |||||||||||||||||||||||||||
Sbjct 58 AAGGCTGAGTCCAGGAGATCTAAGAATGTTAAATCTAATTCAGTGTCAGAGAAAGATACT 117
Query 121 AATAAACAGGAATTT-TA--TTATGACAAAGCTGAGGCTAAGAAGCAAGGAA--AACTTT 175
||||| ||||| || ||||||| ||| || | |||| |||| || |||| |
Sbjct 118 AATAATGAGGAAGGACTAAATTATGACGAAGAGGAAACCAAGAGGCAA--AATGAACTAT 175
Query 176 GGAGAGCTGCAGAGAAGAAGAAACCATGGTATGATGCTCCTGCTAAAGTGAAGG 229
||| |||||||||||||||| | |||||||||||||| ||| |||| |||||||
Sbjct 176 GGAAAGCTGCAGAGAAGAAGCATCCATGGTATGATGCACCTCCTAAGGTGAAGG 229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40036615159
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5