BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313236
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23790.1 | Symbols: | Plant protein of unknown function (DU... 2054 0.0
AT1G70340.1 | Symbols: | Plant protein of unknown function (DU... 316 3e-85
> AT1G23790.1 | Symbols: | Plant protein of unknown function (DUF936)
| chr1:8409963-8412041 FORWARD LENGTH=1817
Length=1817
Score = 2054 bits (1112), Expect = 0.0
Identities = 1469/1627 (90%), Gaps = 82/1627 (5%)
Strand=Plus/Plus
Query 1 ATGGCGGCTTTAGCCCCCGGAATCCTTCAAAAGCTAATCGACGGTATGAAAACCGGAGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 ATGGCGGCTTTAGCCCCCGGAATCCTTCAAAAGCTAATCGACGGTATGAAAACCGGAGTT 196
Query 61 AAACCCACCGGAGAACACAGAAGCTCTTTATTACAAGTCACTGATATCGTCCCCGTTGAT 120
||||| |||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 197 AAACCGACCGGAGAACACAGAAGCTCGTTATTACAAGTCACAGATATCGTCCCTATTGAT 256
Query 121 CTTGACGAGAAGAATCTTATACCCAAACAAGGCTTCTTCATAAAAGTCTCTGATTCTTCT 180
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 257 CTTGACGAGAAGAATCTTTTACCGAAACAAGGCTTCTTCATAAAAGTCTCTGATTCTTCT 316
Query 181 CATTCAATCTACGTTAGTCTTCCTTCTGATCAAGACGACGACGTTCTCAGCAACAAGATG 240
||||||||||||||||| |||||||| |||||||||||||||||| | ||||||||||||
Sbjct 317 CATTCAATCTACGTTAGCCTTCCTTCAGATCAAGACGACGACGTTTTAAGCAACAAGATG 376
Query 241 CAGTTAGGTCAGTTTATCTACGTTGATCGGCTTGATCCAGGGACACCTGTTCCGATCATC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 CAGTTAGGTCAGTTTATCTACGTTGATCGGCTTGATCCAGGGACACCTGTTCCGATCATC 436
Query 301 AAAGGTGCTAGACCGATTCCGGGACGACATCCGTTGCTTGGAACTCCTGAGCCATTGATG 360
|||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 437 AAAGGTGCTAGACCGATTCCCGGACGACATCCTTTACTTGGAACTCCTGAGCCATTGATG 496
Query 361 AGTACAAGAGGAAAGATTGAGAAAGAGTCTGGGACGAGACCGAGAAGAGGCTCTTGGGGT 420
|||||||||||||||||| | ||||| | ||||||| |||||||| |||||||||
Sbjct 497 AGTACAAGAGGAAAGATT--G--AGAGT-T----CGAGACCTAGAAGAGGTTCTTGGGGT 547
Query 421 CAAAACGGTGATGTTTCGTCTCTGTTTGTGTTAAAGCCTGCACCTTTGGATTTTGATCAG 480
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 548 CAAAACGGTGACGTTTCGTCTCCGTTTGTGTTAAAGCCTGCACCTTTGGATTTTGATCAG 607
Query 481 TGTACGCCGGCGAAACATAGGATTGGTACGGGGAGATTCATGGCGGGGTCTCCG-GTGGT 539
||||||||||||||||||||| |||||||||||||||| ||||||| ||||||| | ||
Sbjct 608 TGTACGCCGGCGAAACATAGGCTTGGTACGGGGAGATTTATGGCGGCGTCTCCGAAT-GT 666
Query 540 TATGACTAGAGGGAGATCTCCTGGTGGTGTTAGGTGTTCTTATGGAGGAGGGCTTTTGTC 599
||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 667 TATGACTAGAGGGAGGTCACCTGGTGGTGTTAGATGTTCTTATGGTGGAGGGCTTTTGTC 726
Query 600 GAAAATGGTGGATCTTAAAGGAGAAAGTCCTGCTGCGATGATGAGGAAGAGTTGTGTTGT 659
||||| ||| | |||| ||||||||||| |||||||||||||| ||||||||
Sbjct 727 GAAAA---TGG--C-----GGAG--AGTCCTGCTGCAATGATGAGGAAGAGCTGTGTTGT 774
Query 660 TCCGCCGAGTTCGAAGTTTCCGAGAAGTAGAAGTGTTTGCGATAGAGAGACGATGGCGAA 719
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 775 TCCGCCGAGTTCGAAGTTTCCGAGAAGTAAAAGTGTTTGCGATAGAGAGACAATGGCAAA 834
Query 720 GAACTCTGTTTCTTCTGTTCTTCTAAGTCCTTTTAAATCCTCTGCAAAGAAAAGCGATTC 779
|||||||| ||| || || | |||||||||||||||||||||||||||| ||||||
Sbjct 835 GAACTCTG----TTC--TT-TT-T-AGTCCTTTTAAATCCTCTGCAAAGAAAAACGATTC 885
Query 780 ACCGCCTCCGAGTATGCGTACTAGAAGAGCAACAGCAGCTGCTTTGTTGGAAGATGAAAG 839
||||||||||||| | |||||||||||||||||||||||| | |||||||||||||||||
Sbjct 886 ACCGCCTCCGAGTGTACGTACTAGAAGAGCAACAGCAGCTTCCTTGTTGGAAGATGAAAG 945
Query 840 AGAGGCTCCAAAGTCTACCTCAAAGCTGGCTTCTCCAAAGCATGAATCTAAGTATAGTAA 899
||| | | || | |||| | ||| | | | || |||||||||||
Sbjct 946 AGA-G-------G-CT--C-CAAA----G--TCT----A-C-T---TCAAAGTATAGTAA 978
Query 900 GTTGGAAAAAACAGAGAAGAGTTTGAGTCTACCAGGAAGACTTAGCACACTGAGCAAGGA 959
| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 GCTGGAAAAACCTGAGAAGAGTTTGAGTCTACCAGGAAGACTTAGCACACTGAGCAAGGA 1038
Query 960 AGCTATGCAGCAGCGAGAGACGGCTCAGAAGATAGCTCTTCAGGCATTGAGAGAAGCTAC 1019
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1039 AGCTATGCAACAGCGAGAGACGGCTCAAAAGATAGCTCTTCAGGCATTGAGAGAAGCTAC 1098
Query 1020 AGCTACCGAAACAGTCGTTCGTCATCTCAAGACATTTGCCAATCTAAGCAAATCAGCAAA 1079
| | || |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1099 AACAACAGAAACAGTAGTTCGTCATCTCAAGACATTTGCAAATCTGAGCAAATCAGCAAA 1158
Query 1080 AGCTGATTGTCCGGCTGCGTGCTTCGACAAGTTCTTGGAGTTTCACAGCCAGATATCTGA 1139
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 AGCTGATTGTCCAGCTGCTTGCTTCGACAAGTTCTTGGAGTTTCACAGCCAGATATCTGA 1218
Query 1140 AACCGTGAACGAAATCGCGTCCATTGAAGCAGCTGCTTC---T---ACTACTGAGAACAA 1193
|||| |||||||||| || || || |||||||||||||| | ||||||||||| ||
Sbjct 1219 AACCATGAACGAAATTGCTTCTATCGAAGCAGCTGCTTCACCTGCTACTACTGAGAAAAA 1278
Query 1194 ATCTGAGGATGGATCATCGTCGATACTACACGAAATCCCGCACAACTCTATTGATCAGGA 1253
||||||||||||||||| | |||||||||||||||| ||| |||||||||||||||||
Sbjct 1279 ATCTGAGGATGGATCAT--TA-ATACTACACGAAATCCAGCATAACTCTATTGATCAGGA 1335
Query 1254 GAAAACAACATCAAAGAGAAGAACTGTCCTGAAGCAGCAGCAAAATCACAAGCAAATGAG 1313
||||||||||||||||||||||| | ||||||||||||||||||| | | ||
Sbjct 1336 GAAAACAACATCAAAGAGAAGAATTCTCCTGAAGCAGCAGCAAAA------G-A---GA- 1384
Query 1314 ATCAAACGATGAGAACAAGAACCCCGCAGCTCCTTCTT-CCGGGTTAGGAAACACCGCGA 1372
|||||||||||||||||||||||||||| | || ||| |||| ||||||||||| ||||
Sbjct 1385 -TCAAACGATGAGAACAAGAACCCCGCAGTTTCT-CTTTCCGGATTAGGAAACACGGCGA 1442
Query 1373 GGTTGGTGAAAGAGATAGAGAATGAAGCTGCAAATTGGTTCATGGAGTTTATAGAAAAGG 1432
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1443 GGTTGGTTAAAGAGATAGAGAAAGAAGCTGCAAATTGGTTCATGGAGTTTATAGAAAAGG 1502
Query 1433 CTTTGGAGAAAGGGATGAAGAAGTGCAGAGACACAAGTGATGCAGATGTTAAGAAGGTTC 1492
|| ||||||||||||||||||| || | || |||||||||||||||||||||||||||||
Sbjct 1503 CTCTGGAGAAAGGGATGAAGAAATGTAAAGGCACAAGTGATGCAGATGTTAAGAAGGTTC 1562
Query 1493 CACAGTCTCTGATTCTCAAAGTTGTAAACTGGGTGGAAGCAGAACAATGTGCTGATAACA 1552
||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||
Sbjct 1563 CACAGTCTCTGATTCTCAAAGTTGTAAACTGGGTGGAAGAAGAACATTCTGCTGATAACA 1622
Query 1553 CGAAACGACCAGTTCATCCAAGAGCATCACATATCACTAGAAAGCTCAGAATCAAGTTGA 1612
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1623 CGAAACGACCAGTTCATCCAAAAGCATCACATATCACTAGAAAGCTCAGAATCAAGTTGA 1682
Query 1613 AGAATCC 1619
|||||||
Sbjct 1683 AGAATCC 1689
> AT1G70340.1 | Symbols: | Plant protein of unknown function (DUF936)
| chr1:26503961-26506613 REVERSE LENGTH=2363
Length=2363
Score = 316 bits (171), Expect = 3e-85
Identities = 405/513 (79%), Gaps = 35/513 (7%)
Strand=Plus/Plus
Query 1 ATGGCGGCTTTAGCCCCCGGAATCCTTCAAAAGCTAATCGACGGTATGAAAACCGGAGTT 60
||||| ||||| || || ||||| ||||||||||||||| | ||||||||||| ||| ||
Sbjct 225 ATGGCAGCTTTGGCACCTGGAATTCTTCAAAAGCTAATCCAAGGTATGAAAACAGGAATT 284
Query 61 AAACCCACCGGAGAACACAGAAGCTCTTTATTACAAGTCACTGATATCGTCCCCGTTGAT 120
||||| || |||| ||| |||||||| | ||||| ||||| |||||||| ||| |||||
Sbjct 285 AAACCAACTAGAGAGCACCGAAGCTCTATGTTACAGGTCACAGATATCGTTCCCATTGAT 344
Query 121 CTTGACGAGAAGAATCT-TATA-CCCAAACAA-GGCTTCTTCAT-AAAAGTCTCTGATTC 176
|| ||||||||| ||| | | || |||||| || ||| |||| |||| ||||||||||
Sbjct 345 CTCGACGAGAAG--TCTCTGGAGCCGAAACAAGGGTTTC-TCATCAAAA-TCTCTGATTC 400
Query 177 TTCTCATTCAATCTACGT-TAGTCTTCCTTCTGATCAAGACGACGACGTTCTCAGCAACA 235
||||| || |||||||| | ||| ||||| ||||||||||||| |||||||||||| |
Sbjct 401 CTCTCACTCGATCTACGTCT-CTCTCCCTTCGGATCAAGACGACGTCGTTCTCAGCAATA 459
Query 236 AGATGCAGTTAGGTCAGTTTATCTACGTTGATCGGCTTGATCCAGGGA-CACCTGTTCC- 293
|| ||||||| |||||||||||||||||||||||||| || || ||| | ||||||||
Sbjct 460 AGTTGCAGTTGGGTCAGTTTATCTACGTTGATCGGCTCGAACC-TGGATCCCCTGTTCCT 518
Query 294 GATCATCAAAGGTGCTAGACCGATTCCGGGACGACATCCGTTGCTTGGAACTCCTGAGCC 353
| |||| ||||| || | ||| || || || || || || |||||||| || || ||| |
Sbjct 519 G-TCATTAAAGGGGCAAAACCCATACCTGGCCGGCACCCCTTGCTTGGGACGCCGGAGAC 577
Query 354 ATTGATGAG-TAC-AAGAGGAAAG-ATTGAGAAAGAG-TCTGGGACG-AGACCGAGAAGA 408
|||| || | | | || | ||||| | ||| ||||| | |||| || || || ||||||
Sbjct 578 ATTGGTG-GTTCCGAA-A-GAAAGAACTGATCAAGAGAT-TGGGTCGAAG-CCTAGAAGA 632
Query 409 GGCTCTTGGGGTCAAAACGGT-GA--TGT-TTCGTCTCTGTTTG-TGTTAAAGCC--TGC 461
|| |||||||| |||||| || || | | |||||||| ||||| ||| ||| || ||
Sbjct 633 GGATCTTGGGGACAAAAC-GTCGACTTTTCTTCGTCTCCGTTTGTTGTGAAA-CCAATG- 689
Query 462 ACCTTTGGATTTTGATCAGTGTACGCCGGCGAA 494
| ||||| ||||| || | |||||||||||
Sbjct 690 -GCGTTGGAGTTTGACCATTCCACGCCGGCGAA 721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80170270365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5