BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg313246

Length=1971
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G23935.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Apoptosis...   444    2e-123


> AT1G23935.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Apoptosis 
inhibitory 5 (InterPro:IPR008383); BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G19515.2); Has 
219 Blast hits to 219 proteins in 67 species: Archae - 0; 
Bacteria - 0; Metazoa - 128; Fungi - 0; Plants - 77; Viruses 
- 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr1:8461909-8465943 
FORWARD LENGTH=2211
Length=2211

 Score =  444 bits (240),  Expect = 2e-123
 Identities = 301/331 (91%), Gaps = 2/331 (1%)
 Strand=Plus/Plus

Query  267  AAAGAGCCTACAAAAGGAAAGTGAAGCAGAAC-TGAAACGACTTGCAGAATATTTTGAAG  325
            |||||| |||||||||||||||||||||| || || ||||||||||| ||||||||||| 
Sbjct  393  AAAGAGTCTACAAAAGGAAAGTGAAGCAG-ACTTGCAACGACTTGCACAATATTTTGAAA  451

Query  326  TAAAGGCTGGTTTGGATACATTTGATGTTTCAGATGCAGACTATGTTGACAGGTTTATAT  385
             ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct  452  CAAAGGCTGGTTTGGATACATTTGATGTTTCAGATGCACATTATGTTGACAGGTTTATAT  511

Query  386  CATGCCTGCTAATGGCTGTTCCATTCTTTGCGAGAGGTGCTCCAAGGAGCAAGTATTTTG  445
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  512  CATGCCTGCTAATGGCTGTTCCATTCTTTGCGAGAGGTGCTCCAAGCAGCAAGTATTTTG  571

Query  446  AGTTCGTGAACCGTCACCATATCTTGCATGATTTTGACAAGCTGTCAGAGCATAGGAAGC  505
            ||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct  572  AGTTCATGAACCGTCACCATATCTTGCATCATTTTGACAAGCTGACAGAGCATAGGAAGC  631

Query  506  TTGATTTTCTCAGAGCTCTTGCTGAGATTTCATCTTTCACAACAAATGAAGCAGCAGGCC  565
            |||||||||||| | |||||||||| || || ||   |||||||  | ||||||||||||
Sbjct  632  TTGATTTTCTCAAATCTCTTGCTGAAATGTCGTCAGACACAACAGCTCAAGCAGCAGGCC  691

Query  566  AGATGATTCCCTCAATAGTTGTCCTCTTAAA  596
            ||||| |||| || ||| |||  ||||||||
Sbjct  692  AGATGCTTCCATCGATAATTGAGCTCTTAAA  722


 Score =  383 bits (207),  Expect = 4e-105
 Identities = 249/270 (92%), Gaps = 0/270 (0%)
 Strand=Plus/Plus

Query  1    ATGTCAAATCCGGAAGTGAACAAACTTCTCCACAAGCTTGAGCTTGAAAAACTCTTGGGA  60
            |||||||| |||||| |||||||||||||| |||| ||||||||  ||||||||||||||
Sbjct  31   ATGTCAAACCCGGAAATGAACAAACTTCTCAACAATCTTGAGCTCAAAAAACTCTTGGGA  90

Query  61   AAATCTGAGGTTAAATCTATCTGCGACATCGAGCTCATATGCAAACATCAACCTGAGCTT  120
            ||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct  91   AAATCTGAGGTTATATCTATCTGCGACATTGAGCTGATATGCAAACATCAACCTGAGCTT  150

Query  121  AGATCTAAGATCATTGATGTTCTTGTCAAATACCTAAATACTGAGAAACCGGTGGAGTCT  180
            | ||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| |
Sbjct  151  ATATCTAAGATTATTGATGTTCTTGTCGAATATCTAAATACTGAGAAACCGGTGGAGTGT  210

Query  181  GATGCTGTGCAAGAGGTTTTTATGGCGATGTTTCATCTAGATAAAGAAGCATCTTTGACT  240
            ||||| |||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct  211  GATGCCGTGCAAGAGGTTTTTATGGCGATGGTTCATGTTGATAAAGAAGCATCTTTGACT  270

Query  241  GCAATGTTGAAGCATCTTGCTGATTTAAAG  270
            ||||||||||| ||||||||| |||| |||
Sbjct  271  GCAATGTTGAACCATCTTGCTAATTTCAAG  300


 Score =  161 bits (87),  Expect = 2e-38
 Identities = 114/127 (90%), Gaps = 2/127 (2%)
 Strand=Plus/Plus

Query  595  AAGGCTCCAGCTGCAGCAACACAATGTTGCAACAAAGAATTCATGCTGAGATTGGATTGT  654
            ||||||||||||||||||||| | | ||||||| ||||||| ||| ||||||||||||||
Sbjct  814  AAGGCTCCAGCTGCAGCAACAGATTTTTGCAACGAAGAATTTATGTTGAGATTGGATTGT  873

Query  655  GTTAGATCTATAACTCGGGCAAGAATGAAGATACTAGCCACAACCTT-GCCTAAGGATGA  713
            |||||||||||||||||||||||| |||||| ||||| ||||||||| || |||||| ||
Sbjct  874  GTTAGATCTATAACTCGGGCAAGATTGAAGAAACTAGACACAACCTTAGC-TAAGGACGA  932

Query  714  TGAAAAG  720
            | |||||
Sbjct  933  TAAAAAG  939



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 97640060025


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5