BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313252
Length=372
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24060.1 | Symbols: | unknown protein; Has 7 Blast hits to ... 418 2e-116
> AT1G24060.1 | Symbols: | unknown protein; Has 7 Blast hits to
7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:8509376-8510062 REVERSE LENGTH=375
Length=375
Score = 418 bits (226), Expect = 2e-116
Identities = 334/382 (87%), Gaps = 23/382 (6%)
Strand=Plus/Plus
Query 1 ATGAAAAACCACCGGAATATTCTTCTAGGTTTCAGCGTCTACCTTTCAGCTGGCACTAAG 60
|||||||| |||| |||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct 7 ATGAAAAAACACCCGAATCTTCTTCTTGGTTTCAGCGTCTACCTTTCAGCTGGGACTAAG 66
Query 61 CTAACCATCCCTCCCGAGGCTAAGCAACATATTGCGCCGTCTGATAATAACAAACGAAAA 120
||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||
Sbjct 67 CTAACCATCCCTCCCGAGGCTGAGCAACATACTGCGCCATCTGATAATAACAAACGAAAA 126
Query 121 CGTGCTAAGTGTAATGATCCAGCGATGATCAAGATTACGTCTGATAATAACAAACGAAAA 180
|||||||||||| |||||||| |||||||||||||||||||||| ||||||||| ||| |
Sbjct 127 CGTGCTAAGTGTGATGATCCATCGATGATCAAGATTACGTCTGAAAATAACAAAAGAACA 186
Query 181 CGTGCTAA-GTGT-ATTGATCCA-GCGATGATCAAGATTGCGTCTGATAATACTGATAAT 237
||||| || |||| || |||||| | |||||||| ||| |||||||||||| |
Sbjct 187 CGTGC-AACGTGTGAT-GATCCATG-GATGATCACGATAACGTCTGATAATA---A---- 236
Query 238 AACAAAAGAAAACGTGCTAAGT---GTGATGATCCAGATTATGATCCGGATTCTGAGAAG 294
|||||||||||||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct 237 --CAAAAGAAAACGTGCTAAGTACTGTGATGATCCAGATTATGATCCGGATTATGTGAAG 294
Query 295 AAGCTTAAGGCTTGTGGAAGTAGTGGATCGC-AAATGAACGCATCTCAATCTCAGCGAAG 353
|||||||||||||||| |||||||||| || ||| ||| ||| |||||||||||||||
Sbjct 295 AAGCTTAAGGCTTGTGTTAGTAGTGGATTGCTAAA-GAAAGCAACTCAATCTCAGCGAAA 353
Query 354 TACTCAA---GTAGAAGACTAG 372
||||||| |||||||| |||
Sbjct 354 TACTCAACAAGTAGAAGATTAG 375
Score = 108 bits (58), Expect = 5e-23
Identities = 97/113 (86%), Gaps = 13/113 (12%)
Strand=Plus/Plus
Query 160 TCTGATAATAACAAACGAAAACGTGCTAAGTGT-ATTGATCCAGCGATGATCAAGATTGC 218
||||||||||||||||||||||||||||||||| || |||||| |||||||||||||| |
Sbjct 106 TCTGATAATAACAAACGAAAACGTGCTAAGTGTGAT-GATCCATCGATGATCAAGATTAC 164
Query 219 GTCTGATAATACTGATAATAACAAAAGAAAACGTGCTAA-GTGTGATGATCCA 270
|||||| || | | | | |||||||| |||||| || |||||||||||||
Sbjct 165 GTCTGA-AA-A-T-A-A----CAAAAGAACACGTGC-AACGTGTGATGATCCA 207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17493176652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5