BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg313254 Length=1611 Score E Sequences producing significant alignments: (Bits) Value AT1G24090.1 | Symbols: | RNase H family protein | chr1:8520834... 1504 0.0 AT1G24095.1 | Symbols: | Putative thiol-disulphide oxidoreduct... 826 0.0 AT5G51080.1 | Symbols: | RNase H family protein | chr5:2076880... 503 2e-141 > AT1G24090.1 | Symbols: | RNase H family protein | chr1:8520834-8523121 FORWARD LENGTH=1335 Length=1335 Score = 1504 bits (814), Expect = 0.0 Identities = 978/1055 (93%), Gaps = 20/1055 (2%) Strand=Plus/Plus Query 1 ATGAACTGTCTGTCTCATGCGCGTTCATATATTTCCTTGGGACTGCTTAAGAGATCAAGC 60 ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 1 ATGAACTGTCTGTCTCATGCGCGTTCATACATTGCCTTGGGACTGCTTAAGAGATCAAGC 60 Query 61 TATGTCAGTTCTACACACTTTCCATGGAATCAATGTTTCTTCTATATGCCTTCAAAATCA 120 |||||||||||| | |||| |||||| ||||||||||||||||||||||||||||| Sbjct 61 TATGTCAGTTCT----A--TTCCGTGGAATGAATGTTTCTTCTATATGCCTTCAAAATCA 114 Query 121 TGTTTAAAGCCTGGAGGTGTGAGTAGTGTGTTTGGAATGTCTAGTGTTCATTCTTATTCC 180 ||||||||||||| || ||||||||||||||||||||| | ||||||||||||||||||| Sbjct 115 TGTTTAAAGCCTGTAGCTGTGAGTAGTGTGTTTGGAATCTGTAGTGTTCATTCTTATTCC 174 Query 181 TCAAGATCAAAGTCTGGTAAATCAAAGATG---TCATCTACCGTTGTTTCTGTTGCGGAT 237 |||||||||||| ||| ||||||||||||| ||||| ||||||||||| | || |||| Sbjct 175 TCAAGATCAAAGGCTGTTAAATCAAAGATGTTATCATCAACCGTTGTTTCGGCTGTGGAT 234 Query 238 AAAGAGAAA-TATGCGTTTTTCGTTGTTCGGAAAGGTGATGTTATTGGAATTTATAAGGA 296 ||||| ||| | || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 235 AAAGA-AAAGGACGCCTTTTTCGTTGTTCGGAAGGGTGATGTTATTGGAATTTATAAGGA 293 Query 297 TTTGAGTGATTGTCAGGCTCAAGTTGGATCTTCGGTGTTTGATCTTCCCGTTAGCGTTTA 356 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 294 TTTGAGTGATTGTCAGGCTCAAGTTGGATCTTCGGTGTTTGATCTTCCGGTTAGTGTTTA 353 Query 357 TAAGGGATACTCTTTGCCGAAAGACACTGAGGAATATCTTTCTTCTGTTGGGCTGAAGAA 416 |||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||| Sbjct 354 TAAGGGATACTCTTTGCCTAAAGACACTGAGGAATATCTCTCTTCTGTTGGGTTGAAGAA 413 Query 417 ACCACTATATAGTTTAAGAGCTTCTGACTTGAAAGACGATATGTTTGGCGCTCTTACACC 476 |||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||| Sbjct 414 ACCACTATATAGTTTAAGAGCTTCAGATTTGAAAGATGATATGTTTGGTGCTCTTACACC 473 Query 477 ATGTCTTTTCCAGGAGCCAGCTTCTTGTACAGTCAAAGTATCTGAAGAGGAGGCTACATC 536 |||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| || Sbjct 474 ATGTCTTTTCCAGGAGCCAGCTCCTTGTACAGTCAAAGTATCTGAAGATGAGACTACCTC 533 Query 537 AGAGACGAAGTCAAAAGATAACCAAAAGGATCAACTTCCTTCAGCTTCTATATCTTATGA 596 ||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||| Sbjct 534 AGAGACGAAGTCAAAAGATGACAAAAAAGATCAACTTCCTTCAGCTTCTATATCTTATGA 593 Query 597 TCCTTTGGAAAAGCTTTCAAAGCTGGAGCCATCTGCTGATATATCAGACGAAACTTGCTT 656 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 594 TCCTTTGGAAAAGCTTTCAAAGGTGGAGCCATCTGCTTATATATCAGACGAAACTTGCTT 653 Query 657 TATTGAATTTGACGGTGCATCAAAGGGAAATCCAGGTCTCTCTGGTGCAGCAGCGGTACT 716 ||| || |||||||||||||||||||||||||| |||||||| || |||||||||||||| Sbjct 654 TATCGAGTTTGACGGTGCATCAAAGGGAAATCCCGGTCTCTCCGGCGCAGCAGCGGTACT 713 Query 717 GAAAACTGAGGACGGAAGCTTGATTTGCAGACTGCGTCAAGGTTTGGGAATTGCCACAAA 776 ||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 714 GAAAACTGAGGACGGGAGCTTGATTTGTAGAGTGCGTCAAGGTTTGGGAATTGCCACAAA 773 Query 777 CAATGCAGCAGAATACCACGCGCTAATCCTAGGATTGAAGTATGCTATTGAGAAAGGTTA 836 |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 774 CAATGCAGCAGAATACCATGCGTTAATCCTAGGATTGAAGTATGCTATTGAGAAAGGTTA 833 Query 837 CAAGAAAATTAAAGTGAAAGGTGACTCCAAGCTAGTCTGTATGCAGAAACAACAGATTAA 896 |||||| |||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 834 CAAGAATATTAAAGTGAAAGGTGACTCCAAGCTGGTCTGTATGCAGA---------TTAA 884 Query 897 AGGCCAATGGAAGGTAAACCACGAGGTACTCGCGAAGCTACACAAGGAAGCAAAACAACT 956 ||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||| ||| Sbjct 885 AGGTCAATGGAAGGTAAACCATGAGGTACTCGCAAAGCTCCACAAGGAAGCAAAACTACT 944 Query 957 CTGCAACAAATGTGTCTCTTTTGAGATCAGCCATGTACTAAGGAATTTAAACGCTGATGC 1016 ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 945 TTGCAACAAATGTGTCTCTTTTGAGATCAGTCATGTACTAAGGAATTTAAATGCTGATGC 1004 Query 1017 GGATGAACAGGCAAACTTGGCTGTCCGTCTTCCCG 1051 |||||| |||||||||||||||||||||||||||| Sbjct 1005 GGATGAGCAGGCAAACTTGGCTGTCCGTCTTCCCG 1039 > AT1G24095.1 | Symbols: | Putative thiol-disulphide oxidoreductase DCC | chr1:8523247-8524929 FORWARD LENGTH=979 Length=979 Score = 826 bits (447), Expect = 0.0 Identities = 525/563 (93%), Gaps = 4/563 (1%) Strand=Plus/Plus Query 1051 GCTCCGTTGCCTGCGTTGTCTTCCGGAGCTATTTCCCGTACGACGGCGGAAATTGACGCT 1110 ||||||| ||| ||||| ||| ||||||||||||||||||||||||| || |||||||| Sbjct 180 GCTCCGTCGCCGGCGTTTTCTACCGGAGCTATTTCCCGTACGACGGCTGAGATTGACGCC 239 Query 1111 GATGAAGCTGTTGCGTACTTGGACCCAGCTGAATC-GTCGACTGCGATTCCGGTGATTAT 1169 ||||||| | ||||| |||||| ||||||||||| || |||| |||||||||||| || Sbjct 240 GATGAAGTTACTGCGTGCTTGGATCCAGCTGAATCGGT-GACTAAGATTCCGGTGATAAT 298 Query 1170 GCCTGGTAACCTTCAGCCACGTGTCGTCGTGTACGACGGAGTCTGTCATCTTTGCCATGG 1229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 GCCTGGTAACCTTCAGCCACGTGTCGTCGTGTACGACGGAGTCTGTCATCTTTGCCATGG 358 Query 1230 AGGTGTGAAGTGGATAATCAAAGCTGATAAGTATAGAAAGATAAAGTTCTGTTGTCTTCA 1289 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 359 AGGTGTGAAGTGGATAATCAAAGCTGATAAGTACAGAAAGATAAAGTTCTGTTGTCTTCA 418 Query 1290 GTCTAAAGCAGCTGAGCCTTATCTAGAAGTGAGTGGTGTCACTAAAGAGGATGTTCAGAA 1349 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 419 GTCTAAAGCAGCTGAGCCTTATCTAGAAGTGAGTGGTGTCACTAGAGAGGATGTTCAGAA 478 Query 1350 ACGATTTCTCTTCGTTGAAGGTCTCGGATTTTACCATCAGGCATCAACGGCTGCACTTC- 1408 ||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||| | Sbjct 479 ACGATTTCTCTTCATTGAAGGTCTCGGCTTTTACCATCAGGCATCAACCGCTGCACT-CA 537 Query 1409 GAGTGGTATCATACTTGCCTCTACCGTATTCCGCATTGAACGCTTTCTCCATCGTTCCCA 1468 |||||||||||||||| ||||| || ||||||||||||||||| |||||||| ||||||| Sbjct 538 GAGTGGTATCATACTTACCTCTGCCTTATTCCGCATTGAACGCGTTCTCCATAGTTCCCA 597 Query 1469 CTCCTTTTAGAGACTCAGTGTATGACTATGTGGCGAAGCATCGGTATGACTGGTTTGGTA 1528 ||||| | |||||||| ||||||||||||||||||||| |||| |||||||||||||| | Sbjct 598 CTCCTCTGAGAGACTCGGTGTATGACTATGTGGCGAAGAATCGCTATGACTGGTTTGGAA 657 Query 1529 AAGCTGAGGATTGCTTGGTTCTGAAAGACAAAGAGCTGTTGGAGAGGTTTATAGACCGAG 1588 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 658 AAGCTGAGGATTGCTTGGTTCTGAATGACAAAGAGCTGTTGGAGAGGTTTATAGACCGAG 717 Query 1589 ATGAACTCAATGATCGAAGCTAA 1611 ||||||||| | ||||||||||| Sbjct 718 ATGAACTCATTAATCGAAGCTAA 740 > AT5G51080.1 | Symbols: | RNase H family protein | chr5:20768804-20770977 REVERSE LENGTH=1489 Length=1489 Score = 503 bits (272), Expect = 2e-141 Identities = 420/488 (86%), Gaps = 24/488 (5%) Strand=Plus/Plus Query 563 AGGATCAACTTCCTTCAGCTTCTATATCTTATGATCCTTTGGAAAAGCTTTCAAAGCTGG 622 |||||||||||||||||||||| | ||| || || ||||||||| | |||| | Sbjct 778 AGGATCAACTTCCTTCAGCTTC-----C--ATG-TCAGTT-GAAAAGCTTGCTGAGCTAG 828 Query 623 AGCCATCTGCTGATATATCAGACGAAACTTGCTTTATTGAATTTGACGGTGCATCAAAGG 682 ||||||||||||||| ||| | ||||||||| ||||||| ||||||||||||||||| | Sbjct 829 AGCCATCTGCTGATACCTCATATGAAACTTGCATTATTGAGTTTGACGGTGCATCAAAAG 888 Query 683 GAAATCCAGGTCTCTCTGGTGCAGCAGCGGTACTGAAAACTGAGGACGGAAGCTTGATTT 742 ||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||| Sbjct 889 GAAATCCCGGTCTCTCTGGCGCTGCAGCTGTACTGAAAACTGAGGACGGAAGCTTGATTT 948 Query 743 GCAGACTGCGTCAAGGTTTGGGAATTGCCACAAACAATGCAGCAGAATACCACGCGCT-A 801 | | ||||||||||||| |||||||||||||| |||||||| ||||| || | | | | Sbjct 949 TTAAAATGCGTCAAGGTTTAGGAATTGCCACAAATAATGCAGCTGAATATCATG-GATTA 1007 Query 802 ATCCTAGGATTGAAGTATGCTATTGAGAAAGGTTACAAGAAAATTAAAGTGAAAGGTGAC 861 ||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| |||| Sbjct 1008 ATCCTAGGATTGAAGCATGCTATCGAGAAAGGTTACACGAAAATTAAAGTGAAAACTGAC 1067 Query 862 TCCAAGCTAGTCTGTATGCAGAAACAACAGATTAAAGGCCAATGGAAGGTAAACCACGAG 921 ||||||||||| |||||||||| || || || ||||||||||||||||||||| Sbjct 1068 TCCAAGCTAGTTTGTATGCAGAT------GA--AA-GGTCAATGGAAGGTAAACCACGAG 1118 Query 922 GTACTCGCGAAGCTACACAAGGAAGCAAAACAACTCT-GCAACAAATGTGTCTCTTTTGA 980 |||||| ||||||| |||||||||||||||||||| | || |||||||| |||||||||| Sbjct 1119 GTACTCTCGAAGCTCCACAAGGAAGCAAAACAACT-TAGCGACAAATGTCTCTCTTTTGA 1177 Query 981 GATCAGCCATGTACTAAGGAATTTAAACGCTGATGCGGATGAACAGGCAAACTTGGCTG- 1039 |||||| |||||||| |||| ||||||| ||||||||||||||||||||||| |||||| Sbjct 1178 GATCAGTCATGTACTTAGGAGTTTAAACTCTGATGCGGATGAACAGGCAAACATGGCTGC 1237 Query 1040 TCCGTCTT 1047 || ||||| Sbjct 1238 TC-GTCTT 1244 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79567863825 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5