BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313254
Length=1611
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24090.1 | Symbols: | RNase H family protein | chr1:8520834... 1504 0.0
AT1G24095.1 | Symbols: | Putative thiol-disulphide oxidoreduct... 826 0.0
AT5G51080.1 | Symbols: | RNase H family protein | chr5:2076880... 503 2e-141
> AT1G24090.1 | Symbols: | RNase H family protein | chr1:8520834-8523121
FORWARD LENGTH=1335
Length=1335
Score = 1504 bits (814), Expect = 0.0
Identities = 978/1055 (93%), Gaps = 20/1055 (2%)
Strand=Plus/Plus
Query 1 ATGAACTGTCTGTCTCATGCGCGTTCATATATTTCCTTGGGACTGCTTAAGAGATCAAGC 60
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1 ATGAACTGTCTGTCTCATGCGCGTTCATACATTGCCTTGGGACTGCTTAAGAGATCAAGC 60
Query 61 TATGTCAGTTCTACACACTTTCCATGGAATCAATGTTTCTTCTATATGCCTTCAAAATCA 120
|||||||||||| | |||| |||||| |||||||||||||||||||||||||||||
Sbjct 61 TATGTCAGTTCT----A--TTCCGTGGAATGAATGTTTCTTCTATATGCCTTCAAAATCA 114
Query 121 TGTTTAAAGCCTGGAGGTGTGAGTAGTGTGTTTGGAATGTCTAGTGTTCATTCTTATTCC 180
||||||||||||| || ||||||||||||||||||||| | |||||||||||||||||||
Sbjct 115 TGTTTAAAGCCTGTAGCTGTGAGTAGTGTGTTTGGAATCTGTAGTGTTCATTCTTATTCC 174
Query 181 TCAAGATCAAAGTCTGGTAAATCAAAGATG---TCATCTACCGTTGTTTCTGTTGCGGAT 237
|||||||||||| ||| ||||||||||||| ||||| ||||||||||| | || ||||
Sbjct 175 TCAAGATCAAAGGCTGTTAAATCAAAGATGTTATCATCAACCGTTGTTTCGGCTGTGGAT 234
Query 238 AAAGAGAAA-TATGCGTTTTTCGTTGTTCGGAAAGGTGATGTTATTGGAATTTATAAGGA 296
||||| ||| | || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 235 AAAGA-AAAGGACGCCTTTTTCGTTGTTCGGAAGGGTGATGTTATTGGAATTTATAAGGA 293
Query 297 TTTGAGTGATTGTCAGGCTCAAGTTGGATCTTCGGTGTTTGATCTTCCCGTTAGCGTTTA 356
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 294 TTTGAGTGATTGTCAGGCTCAAGTTGGATCTTCGGTGTTTGATCTTCCGGTTAGTGTTTA 353
Query 357 TAAGGGATACTCTTTGCCGAAAGACACTGAGGAATATCTTTCTTCTGTTGGGCTGAAGAA 416
|||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||
Sbjct 354 TAAGGGATACTCTTTGCCTAAAGACACTGAGGAATATCTCTCTTCTGTTGGGTTGAAGAA 413
Query 417 ACCACTATATAGTTTAAGAGCTTCTGACTTGAAAGACGATATGTTTGGCGCTCTTACACC 476
|||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||
Sbjct 414 ACCACTATATAGTTTAAGAGCTTCAGATTTGAAAGATGATATGTTTGGTGCTCTTACACC 473
Query 477 ATGTCTTTTCCAGGAGCCAGCTTCTTGTACAGTCAAAGTATCTGAAGAGGAGGCTACATC 536
|||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| ||
Sbjct 474 ATGTCTTTTCCAGGAGCCAGCTCCTTGTACAGTCAAAGTATCTGAAGATGAGACTACCTC 533
Query 537 AGAGACGAAGTCAAAAGATAACCAAAAGGATCAACTTCCTTCAGCTTCTATATCTTATGA 596
||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct 534 AGAGACGAAGTCAAAAGATGACAAAAAAGATCAACTTCCTTCAGCTTCTATATCTTATGA 593
Query 597 TCCTTTGGAAAAGCTTTCAAAGCTGGAGCCATCTGCTGATATATCAGACGAAACTTGCTT 656
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 594 TCCTTTGGAAAAGCTTTCAAAGGTGGAGCCATCTGCTTATATATCAGACGAAACTTGCTT 653
Query 657 TATTGAATTTGACGGTGCATCAAAGGGAAATCCAGGTCTCTCTGGTGCAGCAGCGGTACT 716
||| || |||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 654 TATCGAGTTTGACGGTGCATCAAAGGGAAATCCCGGTCTCTCCGGCGCAGCAGCGGTACT 713
Query 717 GAAAACTGAGGACGGAAGCTTGATTTGCAGACTGCGTCAAGGTTTGGGAATTGCCACAAA 776
||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 714 GAAAACTGAGGACGGGAGCTTGATTTGTAGAGTGCGTCAAGGTTTGGGAATTGCCACAAA 773
Query 777 CAATGCAGCAGAATACCACGCGCTAATCCTAGGATTGAAGTATGCTATTGAGAAAGGTTA 836
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 774 CAATGCAGCAGAATACCATGCGTTAATCCTAGGATTGAAGTATGCTATTGAGAAAGGTTA 833
Query 837 CAAGAAAATTAAAGTGAAAGGTGACTCCAAGCTAGTCTGTATGCAGAAACAACAGATTAA 896
|||||| |||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 834 CAAGAATATTAAAGTGAAAGGTGACTCCAAGCTGGTCTGTATGCAGA---------TTAA 884
Query 897 AGGCCAATGGAAGGTAAACCACGAGGTACTCGCGAAGCTACACAAGGAAGCAAAACAACT 956
||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |||
Sbjct 885 AGGTCAATGGAAGGTAAACCATGAGGTACTCGCAAAGCTCCACAAGGAAGCAAAACTACT 944
Query 957 CTGCAACAAATGTGTCTCTTTTGAGATCAGCCATGTACTAAGGAATTTAAACGCTGATGC 1016
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 945 TTGCAACAAATGTGTCTCTTTTGAGATCAGTCATGTACTAAGGAATTTAAATGCTGATGC 1004
Query 1017 GGATGAACAGGCAAACTTGGCTGTCCGTCTTCCCG 1051
|||||| ||||||||||||||||||||||||||||
Sbjct 1005 GGATGAGCAGGCAAACTTGGCTGTCCGTCTTCCCG 1039
> AT1G24095.1 | Symbols: | Putative thiol-disulphide oxidoreductase
DCC | chr1:8523247-8524929 FORWARD LENGTH=979
Length=979
Score = 826 bits (447), Expect = 0.0
Identities = 525/563 (93%), Gaps = 4/563 (1%)
Strand=Plus/Plus
Query 1051 GCTCCGTTGCCTGCGTTGTCTTCCGGAGCTATTTCCCGTACGACGGCGGAAATTGACGCT 1110
||||||| ||| ||||| ||| ||||||||||||||||||||||||| || ||||||||
Sbjct 180 GCTCCGTCGCCGGCGTTTTCTACCGGAGCTATTTCCCGTACGACGGCTGAGATTGACGCC 239
Query 1111 GATGAAGCTGTTGCGTACTTGGACCCAGCTGAATC-GTCGACTGCGATTCCGGTGATTAT 1169
||||||| | ||||| |||||| ||||||||||| || |||| |||||||||||| ||
Sbjct 240 GATGAAGTTACTGCGTGCTTGGATCCAGCTGAATCGGT-GACTAAGATTCCGGTGATAAT 298
Query 1170 GCCTGGTAACCTTCAGCCACGTGTCGTCGTGTACGACGGAGTCTGTCATCTTTGCCATGG 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GCCTGGTAACCTTCAGCCACGTGTCGTCGTGTACGACGGAGTCTGTCATCTTTGCCATGG 358
Query 1230 AGGTGTGAAGTGGATAATCAAAGCTGATAAGTATAGAAAGATAAAGTTCTGTTGTCTTCA 1289
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 359 AGGTGTGAAGTGGATAATCAAAGCTGATAAGTACAGAAAGATAAAGTTCTGTTGTCTTCA 418
Query 1290 GTCTAAAGCAGCTGAGCCTTATCTAGAAGTGAGTGGTGTCACTAAAGAGGATGTTCAGAA 1349
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 419 GTCTAAAGCAGCTGAGCCTTATCTAGAAGTGAGTGGTGTCACTAGAGAGGATGTTCAGAA 478
Query 1350 ACGATTTCTCTTCGTTGAAGGTCTCGGATTTTACCATCAGGCATCAACGGCTGCACTTC- 1408
||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 479 ACGATTTCTCTTCATTGAAGGTCTCGGCTTTTACCATCAGGCATCAACCGCTGCACT-CA 537
Query 1409 GAGTGGTATCATACTTGCCTCTACCGTATTCCGCATTGAACGCTTTCTCCATCGTTCCCA 1468
|||||||||||||||| ||||| || ||||||||||||||||| |||||||| |||||||
Sbjct 538 GAGTGGTATCATACTTACCTCTGCCTTATTCCGCATTGAACGCGTTCTCCATAGTTCCCA 597
Query 1469 CTCCTTTTAGAGACTCAGTGTATGACTATGTGGCGAAGCATCGGTATGACTGGTTTGGTA 1528
||||| | |||||||| ||||||||||||||||||||| |||| |||||||||||||| |
Sbjct 598 CTCCTCTGAGAGACTCGGTGTATGACTATGTGGCGAAGAATCGCTATGACTGGTTTGGAA 657
Query 1529 AAGCTGAGGATTGCTTGGTTCTGAAAGACAAAGAGCTGTTGGAGAGGTTTATAGACCGAG 1588
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 658 AAGCTGAGGATTGCTTGGTTCTGAATGACAAAGAGCTGTTGGAGAGGTTTATAGACCGAG 717
Query 1589 ATGAACTCAATGATCGAAGCTAA 1611
||||||||| | |||||||||||
Sbjct 718 ATGAACTCATTAATCGAAGCTAA 740
> AT5G51080.1 | Symbols: | RNase H family protein | chr5:20768804-20770977
REVERSE LENGTH=1489
Length=1489
Score = 503 bits (272), Expect = 2e-141
Identities = 420/488 (86%), Gaps = 24/488 (5%)
Strand=Plus/Plus
Query 563 AGGATCAACTTCCTTCAGCTTCTATATCTTATGATCCTTTGGAAAAGCTTTCAAAGCTGG 622
|||||||||||||||||||||| | ||| || || ||||||||| | |||| |
Sbjct 778 AGGATCAACTTCCTTCAGCTTC-----C--ATG-TCAGTT-GAAAAGCTTGCTGAGCTAG 828
Query 623 AGCCATCTGCTGATATATCAGACGAAACTTGCTTTATTGAATTTGACGGTGCATCAAAGG 682
||||||||||||||| ||| | ||||||||| ||||||| ||||||||||||||||| |
Sbjct 829 AGCCATCTGCTGATACCTCATATGAAACTTGCATTATTGAGTTTGACGGTGCATCAAAAG 888
Query 683 GAAATCCAGGTCTCTCTGGTGCAGCAGCGGTACTGAAAACTGAGGACGGAAGCTTGATTT 742
||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 889 GAAATCCCGGTCTCTCTGGCGCTGCAGCTGTACTGAAAACTGAGGACGGAAGCTTGATTT 948
Query 743 GCAGACTGCGTCAAGGTTTGGGAATTGCCACAAACAATGCAGCAGAATACCACGCGCT-A 801
| | ||||||||||||| |||||||||||||| |||||||| ||||| || | | | |
Sbjct 949 TTAAAATGCGTCAAGGTTTAGGAATTGCCACAAATAATGCAGCTGAATATCATG-GATTA 1007
Query 802 ATCCTAGGATTGAAGTATGCTATTGAGAAAGGTTACAAGAAAATTAAAGTGAAAGGTGAC 861
||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||||
Sbjct 1008 ATCCTAGGATTGAAGCATGCTATCGAGAAAGGTTACACGAAAATTAAAGTGAAAACTGAC 1067
Query 862 TCCAAGCTAGTCTGTATGCAGAAACAACAGATTAAAGGCCAATGGAAGGTAAACCACGAG 921
||||||||||| |||||||||| || || || |||||||||||||||||||||
Sbjct 1068 TCCAAGCTAGTTTGTATGCAGAT------GA--AA-GGTCAATGGAAGGTAAACCACGAG 1118
Query 922 GTACTCGCGAAGCTACACAAGGAAGCAAAACAACTCT-GCAACAAATGTGTCTCTTTTGA 980
|||||| ||||||| |||||||||||||||||||| | || |||||||| ||||||||||
Sbjct 1119 GTACTCTCGAAGCTCCACAAGGAAGCAAAACAACT-TAGCGACAAATGTCTCTCTTTTGA 1177
Query 981 GATCAGCCATGTACTAAGGAATTTAAACGCTGATGCGGATGAACAGGCAAACTTGGCTG- 1039
|||||| |||||||| |||| ||||||| ||||||||||||||||||||||| ||||||
Sbjct 1178 GATCAGTCATGTACTTAGGAGTTTAAACTCTGATGCGGATGAACAGGCAAACATGGCTGC 1237
Query 1040 TCCGTCTT 1047
|| |||||
Sbjct 1238 TC-GTCTT 1244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79567863825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5