BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg313265 Length=525 Score E Sequences producing significant alignments: (Bits) Value AT1G24210.1 | Symbols: | Paired amphipathic helix (PAH2) super... 281 4e-75 > AT1G24210.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily protein | chr1:8573549-8575156 REVERSE LENGTH=801 Length=801 Score = 281 bits (152), Expect = 4e-75 Identities = 189/207 (91%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 320 AGACAAGGTTTCAGAGACTTGATACTCATGTAGTGGGGGCGTTTCAAGGGATAATGAAGA 379 ||||| |||||||||| ||||||||||||||||||||||| ||| ||| ||||||||| Sbjct 375 AGACACGGTTTCAGAGCCTTGATACTCATGTAGTGGGGGCAATTCGCGGGTTAATGAAGA 434 Query 380 TGTTTAAAGAGGGAAAGATGTCGGTAAAGGAGGTGCACGAGGCGGTCATTGATGTTCTCT 439 ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 435 TGTTTAAAGAGGGAAAGATGTCGGTAAAGGAGGTGCAAGAGGAGGTCATTGATGTTCTCT 494 Query 440 TCTATCATGAAGATTTGATC-AAGGACTTTCTCAAATTTTTAAAAAAGAAACCTGTAGCA 498 ||||||||||||||||||| ||| ||||||||| |||||| | |||||| |||||| || Sbjct 495 TCTATCATGAAGATTTGATTGAAG-ACTTTCTCAGATTTTTCACAAAGAACCCTGTATCA 553 Query 499 TCAGCATCACTACTACTACAATTATAA 525 |||||||||||||||||||||||||| Sbjct 554 ACAGCATCACTACTACTACAATTATAA 580 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25117073500 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5