BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313265
Length=525
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24210.1 | Symbols: | Paired amphipathic helix (PAH2) super... 281 4e-75
> AT1G24210.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:8573549-8575156 REVERSE LENGTH=801
Length=801
Score = 281 bits (152), Expect = 4e-75
Identities = 189/207 (91%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 320 AGACAAGGTTTCAGAGACTTGATACTCATGTAGTGGGGGCGTTTCAAGGGATAATGAAGA 379
||||| |||||||||| ||||||||||||||||||||||| ||| ||| |||||||||
Sbjct 375 AGACACGGTTTCAGAGCCTTGATACTCATGTAGTGGGGGCAATTCGCGGGTTAATGAAGA 434
Query 380 TGTTTAAAGAGGGAAAGATGTCGGTAAAGGAGGTGCACGAGGCGGTCATTGATGTTCTCT 439
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 435 TGTTTAAAGAGGGAAAGATGTCGGTAAAGGAGGTGCAAGAGGAGGTCATTGATGTTCTCT 494
Query 440 TCTATCATGAAGATTTGATC-AAGGACTTTCTCAAATTTTTAAAAAAGAAACCTGTAGCA 498
||||||||||||||||||| ||| ||||||||| |||||| | |||||| |||||| ||
Sbjct 495 TCTATCATGAAGATTTGATTGAAG-ACTTTCTCAGATTTTTCACAAAGAACCCTGTATCA 553
Query 499 TCAGCATCACTACTACTACAATTATAA 525
||||||||||||||||||||||||||
Sbjct 554 ACAGCATCACTACTACTACAATTATAA 580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25117073500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5