BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313310
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26799.1 | Symbols: | Plant self-incompatibility protein S1... 765 0.0
AT1G26795.1 | Symbols: | Plant self-incompatibility protein S1... 553 2e-156
AT1G26796.1 | Symbols: | Plant self-incompatibility protein S1... 442 4e-123
AT1G26798.1 | Symbols: | Plant self-incompatibility protein S1... 405 6e-112
AT1G26797.1 | Symbols: | Plant self-incompatibility protein S1... 372 6e-102
> AT1G26799.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr1:9283873-9284438 FORWARD LENGTH=566
Length=566
Score = 765 bits (414), Expect = 0.0
Identities = 470/497 (95%), Gaps = 3/497 (1%)
Strand=Plus/Plus
Query 939 CAAAGAAAAATATTGTGTCACAAAACCTTTAAACCCTTCCATGGCTTCCTCAACAAATAA 998
||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 14 CAAGGAAAAATATTGTGTCAC-AAACCAGTAAACCCTTCCATGGCTTCCTCAACAAATAA 72
Query 999 CCACTTCACTTTCC-TGCTTCTCTCATTTTTATTTATCCCaaaaaaaTCGTCATCTTTGG 1057
||||||||| |||| |||||||||||||||||||||||| |||||| | |||||||||||
Sbjct 73 CCACTTCAC-TTCCGTGCTTCTCTCATTTTTATTTATCCTAAAAAAGTTGTCATCTTTGG 131
Query 1058 GAAATCATTCGTCCATCGATGGAATTTTACTGTTTTCACCTAAACATGTCGTGATCTACA 1117
||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct 132 GAAATCATTCGTCCAACGATGGAATTTTGCTATTTTCACCTAAACATGTCGTGATCTACA 191
Query 1118 ACACATTGACCACACGTGCAACATTGGTCGTACATTGCATGAATAAAGAGAAAGATTTGG 1177
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 192 ACACATTGACCTCACGTGCAACATTGGTCGTACATTGTGTGAATAAAGAGAAAGATTTGG 251
Query 1178 GGATAAAAAAGCTCCCAATTGGAGCTAGTTTTGATTTCAGGTTTCATGTCAATTTTCGTA 1237
||||| ||||||||||||| ||||||||||| ||||||||||||| ||||||| ||||||
Sbjct 252 GGATACAAAAGCTCCCAATCGGAGCTAGTTTCGATTTCAGGTTTCGTGTCAATCTTCGTA 311
Query 1238 AAACAACAACGTATAATTGCACTTTCGAGTGGCCCGGAAGTAAAGAGAAATTTGATATTT 1297
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 312 AAACAACAACGTATAATTGCACTTTCGAGTGGCCCGGAAGTATAGAGAAATTTGATATTT 371
Query 1298 TTAGGGCAGACAGAGACGACAGTGCAACAAGTCCTATTGGGGTCTGTAGAGAATGTATAT 1357
||||||||||||||||||||| || |||||||||||||||| | ||||||||||||||||
Sbjct 372 TTAGGGCAGACAGAGACGACAATGAAACAAGTCCTATTGGGATATGTAGAGAATGTATAT 431
Query 1358 GGTACATTTATGAACCAGCCCCTTGTCGTGAAAAACGTGACGGAGGCCATTCTATATGCT 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 GGTACATTTATGAACCAGCCCCTTGTCGTGAAAAACGTGACGGAGGCCATTCTATATGCT 491
Query 1418 TTTCATGGGATCCATAG 1434
|| ||||||||| ||||
Sbjct 492 TTACATGGGATCGATAG 508
> AT1G26795.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr1:9276381-9276954 FORWARD LENGTH=574
Length=574
Score = 553 bits (299), Expect = 2e-156
Identities = 359/388 (93%), Gaps = 3/388 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCCTCAACAAATCAATTTTTTATTTTCGTGCTATTCTTATTTCTCTTTGTCCTC 60
||||||| |||||| |||||| ||||||||| || ||||||||||| ||||| |||||
Sbjct 39 ATGGCTTTCTCAACCAATCAAAATTTTATTTTTGTATTATTCTTATTTTTCTTTATCCTC 98
Query 61 AAAACGTCGGCATCATTAGCATATCACTCGTCCCCCGATGGACTTTTACCATTCTCATC- 119
|||||||| ||||||||| || ||||||||||||||||||| |||||||||||| || |
Sbjct 99 AAAACGTCAGCATCATTAACAAATCACTCGTCCCCCGATGGGCTTTTACCATTCGCA-CG 157
Query 120 TAAACATGTAATCATCATCAACAAATTGGTCACACGTGCAACGTTGATTGTACATTGTAC 179
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 TAAACATGTTATCATCATCAACAAATTGGTCACACGTGCAACGTTGATTGTACATTGTAC 217
Query 180 AAACAAAGGAGATGATTTAGGGGTAATAAGACTCAACCCTCTAGATAGTTTTGATTTCAG 239
|||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 218 TAACAAAGGGGAAGATTTAGGGGTAATAAGACTCAACCCTCTAGATCGTTTTGATTTCAG 277
Query 240 GTTTCGTGTCAATCTCCGTAAAACAACAACGTACACTTGCAGTTTCGAGTGGCCAGGCAA 299
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 278 GTTTCGTGTCAATCTCCGTAAAACAACAACATACACTTGCAGTTTCGAGTGGCCCGGCAA 337
Query 300 TACAGCTACGTTTGATATTTTTAGAGCGGATAGAGACGATAATCCAAAAAGTAAATATGG 359
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 338 TACAGCTACGTTTGATATTTTTAGAGCTGATAGAGACGATAATCCAAGCGGTAAATATGG 397
Query 360 AGTTTGCAGCGAATGTATTTGGAG-ATT 386
|||||||||||||||||| ||||| |||
Sbjct 398 AGTTTGCAGCGAATGTATATGGAGTATT 425
Score = 353 bits (191), Expect = 2e-96
Identities = 228/245 (93%), Gaps = 5/245 (2%)
Strand=Plus/Plus
Query 388 TTT-CCCTTCGCATC-TAAACATGTTATCATCATCAACAAATTGGTCACACTTGCAACGT 445
||| || |||||| | ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 143 TTTACCATTCGCA-CGTAAACATGTTATCATCATCAACAAATTGGTCACACGTGCAACGT 201
Query 446 TGATTGTGCATTGTAGGAACAAAGGGGACGATTTAGGGGTAATAAGCCTCCAA-CATTTA 504
||||||| ||||||| ||||||||||| ||||||||||||||||| || ||| | | ||
Sbjct 202 TGATTGTACATTGTACTAACAAAGGGGAAGATTTAGGGGTAATAAGACT-CAACCCTCTA 260
Query 505 GCTCGTTTTGATTTCAGGTTTCGTGTCAATCTCCGTAAAACAACAACGTACACTTGCAGT 564
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 261 GATCGTTTTGATTTCAGGTTTCGTGTCAATCTCCGTAAAACAACAACATACACTTGCAGT 320
Query 565 TTCGAGTGGCCCGGCAATACAGCTACGTTTGATATTTTTAGAGCGGATAGAGACGATAAT 624
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 321 TTCGAGTGGCCCGGCAATACAGCTACGTTTGATATTTTTAGAGCTGATAGAGACGATAAT 380
Query 625 CCAAG 629
|||||
Sbjct 381 CCAAG 385
> AT1G26796.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr1:9278953-9279482 FORWARD LENGTH=530
Length=530
Score = 442 bits (239), Expect = 4e-123
Identities = 341/390 (87%), Gaps = 7/390 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCCTCAA-CAAATCAATTTTTTATTTTCGTGCT-ATTCTTATTTCTCTTTGTCC 58
|||||||| |||| | |||||| ||| |||||| || | ||| || |||||| |||||
Sbjct 6 ATGGCTTCTTCAAGC-AATCAAAATTTCATTTTCTTGTTAATT-TTCTTTCTCGCTGTCC 63
Query 59 TCAAAACGTCGGCATCATTAGCATATCACTCGTCCCCCGATGGACTTTTACCATTCTCAT 118
|||||| ||| ||||||| | | || | |||||| |||| ||| | |||| |||||||
Sbjct 64 ACAAAACATCGTCATCATTTGGAAATTATTCGTCCACCGAAGGAGTCTTACTATTCTCAC 123
Query 119 CTAAACATGTAATCATCATCAACAAATTGGTCACACGTGCAACGTTGATTGTACATTGTA 178
|||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 124 CTAAACATGTTATCATCATCAACAAATTGGTCACACTTGCAACGTTGATTGTGCATTGTA 183
Query 179 CAAACAAAGGAGATGATTTAGGGGTAATAAGACT-CAACCCTCTAGATAGTTTTGATTTC 237
|||||||| || ||||||||||||||||| || ||| | | ||| | ||||| |||||
Sbjct 184 GGAACAAAGGGGACGATTTAGGGGTAATAAGCCTCCAA-CATTTAGCTCGTTTTCATTTC 242
Query 238 AGGTTTCGTGTCAATCTCCGTAAAACAACAACGTACACTTGCAGTTTCGAGTGGCCAGGC 297
|||||||| |||||||| ||||||||||||| |||||||||||||||||||||||| |||
Sbjct 243 AGGTTTCGCGTCAATCTTCGTAAAACAACAAAGTACACTTGCAGTTTCGAGTGGCCCGGC 302
Query 298 AATACAGCTACGTTTGATATTTTTAGAGCGGATAGAGACGATAATCCAAAAAGTAAATAT 357
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 303 AATACAGCTACGTTTGATATTTTTAGAGCTGATAGAGACGATAATCCAAGAAGTAAATAT 362
Query 358 GGAGTTTGCAGCGAATGTATTTGGAG-ATT 386
|||||||||||||||||||||||||| |||
Sbjct 363 GGAGTTTGCAGCGAATGTATTTGGAGTATT 392
Score = 399 bits (216), Expect = 3e-110
Identities = 230/237 (97%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 394 TTCGCATCTAAACATGTTATCATCATCAACAAATTGGTCACACTTGCAACGTTGATTGTG 453
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TTCTCACCTAAACATGTTATCATCATCAACAAATTGGTCACACTTGCAACGTTGATTGTG 176
Query 454 CATTGTAGGAACAAAGGGGACGATTTAGGGGTAATAAGCCTCCAACATTTAGCTCGTTTT 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CATTGTAGGAACAAAGGGGACGATTTAGGGGTAATAAGCCTCCAACATTTAGCTCGTTTT 236
Query 514 GATTTCAGGTTTCGTGTCAATCTCCGTAAAACAACAACGTACACTTGCAGTTTCGAGTGG 573
||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 237 CATTTCAGGTTTCGCGTCAATCTTCGTAAAACAACAAAGTACACTTGCAGTTTCGAGTGG 296
Query 574 CCCGGCAATACAGCTACGTTTGATATTTTTAGAGCGGATAGAGACGATAATCCAAGA 630
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 297 CCCGGCAATACAGCTACGTTTGATATTTTTAGAGCTGATAGAGACGATAATCCAAGA 353
> AT1G26798.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr1:9281791-9282341 FORWARD LENGTH=551
Length=551
Score = 405 bits (219), Expect = 6e-112
Identities = 283/313 (90%), Gaps = 8/313 (3%)
Strand=Plus/Plus
Query 630 AGCGTTTGGAAACTTTTTATCTGTCGATGGAGGT-TTCCCGTTCT-CACCTAAACATGTT 687
|||||||| ||||| | ||||||||||| | | || ||||| | ||||||||||||||
Sbjct 81 AGCGTTTGAAAACTATACATCTGTCGATGTTGATCTT-CCGTT-TGCACCTAAACATGTT 138
Query 688 GTAATCATCAACACATTGAACTCACATGAAATATTGGTCGTGCACTGTAGGAATAAAGGG 747
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 139 ATAATCATCAACACATTGAACCCACATGAAAGATTGGTCGTGCACTGTAGGAATAAAGGG 198
Query 748 AAAGAT-TTGGGGTTTCGTGCGCTCCAATCC-CAAGAACAAATAGATTTTAGGTTTCATG 805
|||||| | |||| ||| |||| | || || ||||||||||||||||| ||||||| |
Sbjct 199 AAAGATCTAGGGG-TTCATGCGTTAGAA-CCTCAAGAACAAATAGATTTCAGGTTTCGGG 256
Query 806 TCAATCTACGCAGAACAACAACATACACTTGCACATTCTCGTGGCCAGGAAATGCAAAGA 865
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 257 TCAATCTACGCAGAACAACAACATACACTTGTACATTCTCGTGGCCAGGAAATGCAAAGA 316
Query 866 CGTTTGATATTTTTAGAGTGGATAGAGACGATAATTCAAAAAGTACATGTGGAATATGTA 925
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 317 CATTTGATATTTTTAGAGTAGATAGAGACGATAATTCAAAAAGTACATGTGGAATATGTA 376
Query 926 AAGAATGTATTTG 938
||||||||||||
Sbjct 377 GAGAATGTATTTG 389
> AT1G26797.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr1:9280955-9281560 FORWARD LENGTH=606
Length=606
Score = 372 bits (201), Expect = 6e-102
Identities = 276/312 (88%), Gaps = 6/312 (2%)
Strand=Plus/Plus
Query 630 AGCGTTTGGAAACTTTTTATCTGTCGATGG-AGGTTTCCCGTTCTCACCTAAACATGTTG 688
|||||||| |||||||| |||||||||||| | |||||||||||||||||||||||||
Sbjct 70 AGCGTTTGAAAACTTTTCATCTGTCGATGGTA-ATTTCCCGTTCTCACCTAAACATGTTA 128
Query 689 TAATCATCAACACATTGAACTCACAT-GAAATATTGGT-CGTGCACTGTAGGAATAAAGG 746
||||||||||||| ||| || ||||| |||| ||| | |||||||||||||||||||||
Sbjct 129 TAATCATCAACACTTTGCACCCACATGGAAA-ATT-ATACGTGCACTGTAGGAATAAAGG 186
Query 747 GAAAGATTTGGGGTTTCGTGCGCTCCAATCCCAAGAACAAATAGATTTTAGGTTTCATGT 806
| ||||||| ||| ||| | | | ||| | ||||||||||||||| ||||||| |||
Sbjct 187 GGAAGATTTAGGGCTTCATAAGATAGAATATCGAGAACAAATAGATTTCAGGTTTCGTGT 246
Query 807 CAATCTACGCAGAACAACAACATACACTTGCACATTCTCGTGGCCAGGAAATGCAAAGAC 866
|||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 247 CAATCTACGCAGAACAACAACATACACTTGTAAATTCTCGTGGCCAGGAAATGAAAAGAC 306
Query 867 GTTTGATATTTTTAGAGTGGATAGAGACGATAATTCAAAAAGTACATGTGGAATATGTAA 926
||| ||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||
Sbjct 307 GTTCGATATTTTTAGAGCGGATAGAGACGATAGTTCAAAAAGTACAAGTGGAATATGTAG 366
Query 927 AGAATGTATTTG 938
||||||||||||
Sbjct 367 AGAATGTATTTG 378
Score = 152 bits (82), Expect = 8e-36
Identities = 219/284 (77%), Gaps = 14/284 (5%)
Strand=Plus/Plus
Query 105 TTTACCATTCTCATCTAAACATGTAATCATCATCAACAAATTGGTCACACGTGCAACGTT 164
||| || |||||| |||||||||| || |||||||||| ||| | ||| || || ||
Sbjct 103 TTTCCCGTTCTCACCTAAACATGTTATAATCATCAACACTTTGCACCCACATGGAAAATT 162
Query 165 GAT-TGTACATTGTACAAACAAAGGAGATGATTTAGGG-GTAATAAGACTCA-ACCCTCT 221
|| || || |||| || ||||| || ||||||||| | |||||| | | | ||
Sbjct 163 -ATACGTGCACTGTAGGAATAAAGGGGAAGATTTAGGGCTTCATAAGA-T-AGAATATCG 219
Query 222 AG-ATAGTTTTGATTTCAGGTTTCGTGTCAATCTCCGTAAAACAACAACGTACACTTGCA 280
|| | | | ||||||||||||||||||||||| || | ||||||||| |||||||| |
Sbjct 220 AGAACA-AATAGATTTCAGGTTTCGTGTCAATCTACGCAGAACAACAACATACACTTGTA 278
Query 281 GTTTCGAGTGGCCAGGCAAT--ACAGCTACGTTTGATATTTTTAGAGCGGATAGAGACGA 338
||| ||||||||| ||| | || ||||| ||||||||||||||||||||||||||
Sbjct 279 AATTCTCGTGGCCAGGAAATGAAAAG--ACGTTCGATATTTTTAGAGCGGATAGAGACGA 336
Query 339 TAATCCAAAAAGTA-AATATGGAGTTTGCAGCGAATGTATTTGG 381
|| | ||||||||| || |||| | || || ||||||||||||
Sbjct 337 TAGTTCAAAAAGTACAAG-TGGAATATGTAGAGAATGTATTTGG 379
Score = 147 bits (79), Expect = 4e-34
Identities = 188/240 (78%), Gaps = 9/240 (4%)
Strand=Plus/Plus
Query 388 TTTCCC-TTCGCATCTAAACATGTTATCATCATCAACAAATTGGTCACACTTGCAACGTT 446
|||||| ||| || ||||||||||||| |||||||||| ||| | ||| || || ||
Sbjct 103 TTTCCCGTTCTCACCTAAACATGTTATAATCATCAACACTTTGCACCCACATGGAAAATT 162
Query 447 GAT-TGTGCATTGTAGGAACAAAGGGGACGATTTAGGG-GTAATAAGCCTCCAACATTTA 504
|| ||||| |||||||| |||||||| ||||||||| | ||||| | || || |
Sbjct 163 -ATACGTGCACTGTAGGAATAAAGGGGAAGATTTAGGGCTTCATAAG-ATAGAATATCGA 220
Query 505 GCTCGTTTTGATTTCAGGTTTCGTGTCAATCTCCGTAAAACAACAACGTACACTTGCAGT 564
| | | ||||||||||||||||||||||| || | ||||||||| |||||||| |
Sbjct 221 GAACAAATAGATTTCAGGTTTCGTGTCAATCTACGCAGAACAACAACATACACTTGTAAA 280
Query 565 TTCGAGTGGCCCGGCAAT--ACAGCTACGTTTGATATTTTTAGAGCGGATAGAGACGATA 622
||| |||||| || ||| | || ||||| ||||||||||||||||||||||||||||
Sbjct 281 TTCTCGTGGCCAGGAAATGAAAAG--ACGTTCGATATTTTTAGAGCGGATAGAGACGATA 338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70682367360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5