BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313311
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26790.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 1807 0.0
> AT1G26790.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr1:9273857-9275312 REVERSE LENGTH=1191
Length=1191
Score = 1807 bits (978), Expect = 0.0
Identities = 1133/1205 (94%), Gaps = 22/1205 (2%)
Strand=Plus/Plus
Query 1 ATGTGGCTCTCTCATCTCTTCATGTCCCTCTCTCAGCTGACGTGTAATTTCTCCATTTTC 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGTGGCTCTCTCATCTCTTCATGTCCCTCTCTAAGCTGACGTGTAATTTCTCCATTTTC 60
Query 61 TCTGTCTTTATGGCTTGTGGCTCTATTATTGGTATGTCTCAAGTTAGAGATACTCCGGTT 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 TCTGTCTTTATGGCTTGTGGCTC---TATTGGTATGTCTCAAGTTAGAGATACTCCGGTT 117
Query 121 AAGTTGTTTGGCTGGACAATTACACCGGTTTCTCATGATCCACACtcttcttcgt-ccac 179
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 118 AAATTGTTTGGCTGGACAATTACACCGGTTTCTCATGATCCATACTCTTCTTCGTCCCA- 176
Query 180 tgttcttcctgattcttcctcgtcttcctcatcttcttctccatcacttcGACCACACAT 239
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 177 TGTTCTTCCTGATTCTTCCTCGTCTTCCTCGTCTTCTTCTCTATCACTTCGACCACACAT 236
Query 240 GATGAATAACCAATCTGCTACTAACAATACAAGTCTTAAGATGTCATCTAATCTTAACAA 299
||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||
Sbjct 237 GATGAATAACCAATCTGTTACTGACAATACAAGTCTTAAGCTGTCATCTAATCTTAACAA 296
Query 300 TGAGTCGAAAGAAACATCTGAGAACAGCGATGACCAACACAGCGAGATTACAACAATTAC 359
||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 297 CGAGTCAAAAGAAACATCTGAGAACAGTGATGACCAACACAGCGAGATCACAACAATTAC 356
Query 360 ATC-G--GAAGAGAAAACAACTGAACTGAAGAAACCAGACAAGATTCTTCCGTGTCCGAG 416
||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 357 ATCGGAAGAAGAGAAAACAACTGAACTGAAGAAACCAGACAAGATTCTTCCATGTCCGAG 416
Query 417 ATGCAACAGCGCAGACACCAAATTCTGTTACTACAACAACTACAACGTTAACCAGCCACG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ATGCAACAGCGCAGACACCAAATTCTGTTACTACAACAACTACAACGTTAACCAGCCACG 476
Query 477 TCACTTCTGTAGAAAATGCCAGAGGTATTGGACTGCTGGTGGATCCATGAGGACCGTCCC 536
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 477 TCACTTCTGTAGAAAATGCCAGAGGTATTGGACCGCTGGTGGATCCATGAGGATCGTCCC 536
Query 537 AGTAGGCTCAGGCCGTCGCAAGAACAAGGGATGGGTTTCTTCAGACCAGTACCTGCACAT 596
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GGTTGGCTCAGGCCGTCGCAAGAACAAGGGATGGGTTTCTTCAGACCAGTACCTGCACAT 596
Query 597 CACTTCCGAGGATACTGACAATTACAATAGCTCCTCAACGAAGATTCTAAGCTTCGAGTC 656
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 597 CACTTCCGAGGATACTGACAATTACAATAGCTCCTCAACAAAGATTCTAAGCTTCGAGTC 656
Query 657 TTCGAACTCTTTGCTTACTGAGAA-CACTAAGCATCAATCAAGC-AATGTGAAGAAAAAC 714
|||| |||||||| | ||||||| | ||||||||||||||| | || ||||||| ||||
Sbjct 657 TTCGGACTCTTTGGTAACTGAGAGGC-CTAAGCATCAATCAAACGAA-GTGAAGATAAAC 714
Query 715 GGC-GATTCTGTTTCACAAGAACTCAACAACTTCCAAGGGTTTCTTCCTCCGCAAGGATA 773
| | || ||||||||||||||| |||||||||||||||||| |||||||| |||| ||
Sbjct 715 G-CTGAACCTGTTTCACAAGAACCCAACAACTTCCAAGGGTTACTTCCTCCCCAAGCATC 773
Query 774 CCCTGTTTCGCCCCCTTGGCCTTGCCAATACCCTCCAAACCCTAGTTTCTACCACATGCC 833
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 774 CCCTGTTTCGCCTCCTTGGCCTTACCAATACCCTCCAAACCCTAGTTTCTACCACATGCC 833
Query 834 CGTCTACTGGGGCTGTGCGGTACCGGTTTGGTCTACCCTAGGCACTTCTACATGTCTTGG 893
||||||||||||||| ||| ||||||||||||||||||| | ||||||||||||||||||
Sbjct 834 CGTCTACTGGGGCTGCGCGATACCGGTTTGGTCTACCCTCGACACTTCTACATGTCTTGG 893
Query 894 GAAAAGGACAAGAGACGAAGCTGAAGCTTCGCATGAAACTGTTAAAGAGAGCAAAAATGC 953
||||||||||||||||||| | |||| |||||||||||||||||||| ||||||||
Sbjct 894 GAAAAGGACAAGAGACGAA----A--CTTCTCATGAAACTGTTAAAGAGAGTAAAAATGC 947
Query 954 TTTTGTGAGAACAAGCTTGGTTTTGGAATCTCAGAGTATCAAAAATGAAACAATTATGAC 1013
||||| ||||||||||||| |||||||||||||||| |||||||||||||||| |||| |
Sbjct 948 TTTTGAGAGAACAAGCTTGCTTTTGGAATCTCAGAGCATCAAAAATGAAACAAGTATGGC 1007
Query 1014 TACAAATAACCATGTGTGGTATCCGGTACCGATGACCCGCGAGAAGACAGA-GCAATTCA 1072
|||||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||
Sbjct 1008 TACAAATAACCATGTGTGGTATCCAGTACCGATGACCCGCGAGAAGACACAAG-AATTCA 1066
Query 1073 GCTTTTTCAGTAATGGAGCTGAAACAAAGAGCAACAACCAGAGATTCGTCCCTGAAACGT 1132
||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||
Sbjct 1067 GCTTTTTCAGTAATGGAGCTGAAACAAAGAGCAGCAACAACAGATTCGTCCCTGAAACGT 1126
Query 1133 ATCTTAAGCTGCAAGCAAACCCTGCAGCCATGGCAAGATCTATGAACTTCAGAGAGAGCA 1192
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 ATCTTAACCTGCAAGCAAACCCTGCAGCCATGGCAAGATCTATGAACTTCAGAGAGAGCA 1186
Query 1193 TATAA 1197
|||||
Sbjct 1187 TATAA 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58784838195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5