BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313341
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26480.1 | Symbols: GRF12, GF14 IOTA | general regulatory fa... 1358 0.0
AT5G16050.1 | Symbols: GRF5, GF14 UPSILON | general regulatory ... 158 1e-37
> AT1G26480.1 | Symbols: GRF12, GF14 IOTA | general regulatory
factor 12 | chr1:9156329-9157950 REVERSE LENGTH=1156
Length=1156
Score = 1358 bits (735), Expect = 0.0
Identities = 779/801 (97%), Gaps = 0/801 (0%)
Strand=Plus/Plus
Query 1 ATGTCATCATCAGGATCCGACAAAGAGAGAGAGACTTTTGTCTATATGGCTAAGCTCTCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 ATGTCATCATCAGGATCCGACAAAGAGAGAGAGACTTTTGTCTATATGGCTAAGCTCTCC 165
Query 61 GAACAAGCCGAACGATACGACGAGATGGTGGAGACGATGAAGAAAGTGGCGAAGGTGAAT 120
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 166 GAACAAGCCGAGCGATACGACGAGATGGTGGAGACGATGAAGAAAGTGGCGAGGGTTAAT 225
Query 121 AGCGAGCTGACGGTGGAAGAGAGGAATCTGTTGTCAGTTGGTTACAAGAACGTAATCGGA 180
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 226 AGCGAGCTGACTGTGGAAGAGAGGAATCTGTTGTCGGTTGGTTACAAGAACGTGATCGGA 285
Query 181 GCAAGAAGAGCTTCGTGGAGGATAATGTCATCGATCGAGCAGAAAGAAGAGTCCAAAGGC 240
||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 286 GCAAGAAGAGCTTCGTGGAGGATAATGTCGTCCATCGAGCAGAAAGAAGAGTCTAAAGGC 345
Query 241 AATGAATCAAATGTGAAACATATCAAGGGTTATCGCCAAAAGGTTGAAGATGAGCTCGCT 300
||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 346 AATGAATCAAACGTGAAACAAATCAAGGGTTATCGCCAAAAGGTAGAAGATGAGCTCGCT 405
Query 301 AACATTTGCCAAGACATTCTCTCCATCATTGATCAGCATCTCATCCCTCACGCTACCTCA 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 406 AACATTTGCCAAGACATTCTCACCATCATTGATCAGCATCTCATCCCTCACGCTACCTCA 465
Query 361 GGGGAAGCTACCGTCTTCTACTACAAGATGAAAGGAGATTATTACCGTTACTTGGCTGAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 GGGGAAGCTACCGTCTTCTACTACAAGATGAAAGGAGATTATTACCGTTACTTGGCTGAG 525
Query 421 TTTAAGACCGAGCAAGAGAGGAAGGAAGCTGCTGAACAGTCGCTTAAAGGCTATGAGGCT 480
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 526 TTTAAGACCGAGCAAGAGAGGAAGGAAGCTGCTGAACAGTCTCTCAAAGGCTATGAGGCT 585
Query 481 GCAACACAAGCTGCAAGCACTGAGCTTCCTTCGACCCATCCGATTCGTCTTGGCCTTGCT 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 586 GCAACACAAGCTGCAAGCACTGAGCTTCCTTCGACCCATCCAATTCGTCTTGGCCTTGCT 645
Query 541 CTTAACTTCTCTGTTTTCTACTACGAGATCATGAACTCTCCTGAAAGAGCTTGCCATTTG 600
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 646 CTTAACTTCTCTGTTTTCTACTATGAGATCATGAACTCTCCTGAAAGAGCTTGCCATTTG 705
Query 601 GCGAAGCAAGCCTTCGATGAGGCGATTGCGGAGTTAGATACTCTAAGTGAGGAGTCGTAC 660
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 706 GCTAAGCAAGCCTTCGATGAGGCGATTGCAGAGTTAGATACTCTAAGTGAGGAGTCGTAC 765
Query 661 AAGGACAGCACTTTGATCATGCAGCTCCTGAGAGACAACCTCACCCTCTGGACTTCTGAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 AAGGACAGCACTTTGATCATGCAGCTCCTGAGAGACAACCTCACCCTCTGGACTTCTGAT 825
Query 721 CTTCCTGAAGATGGAGGAGAAGACAACATCAAGACTGAAGAACCCAAGCAAGAACAGGCT 780
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 826 CTTCCTGAAGATGGAGGAGAAGACAACATCAAGACTGAAGAATCCAAGCAAGAACAGGCC 885
Query 781 AAGCCTGCAGATGCCACTGAG 801
|||||||| ||||||||||||
Sbjct 886 AAGCCTGCCGATGCCACTGAG 906
> AT5G16050.1 | Symbols: GRF5, GF14 UPSILON | general regulatory
factor 5 | chr5:5243745-5245820 REVERSE LENGTH=1162
Length=1162
Score = 158 bits (85), Expect = 1e-37
Identities = 501/694 (72%), Gaps = 60/694 (9%)
Strand=Plus/Plus
Query 59 CCGAACAAGCCGAACGATACGACGAGATGGTGGAG-ACGATGAAGAAAGTGGCGAAG--- 114
|||| ||||| || || ||||| || ||||| ||| | ||| ||||||| || |||
Sbjct 142 CCGAGCAAGCTGAGCGTTACGAGGAAATGGTTGAGTTC-ATGGAGAAAGTTGCAAAGACC 200
Query 115 GTGAATAGCGA-G--CTGACGGTGGAAGAGAGGAATCTGTTGTCAGTTGGTTACAAGAAC 171
||| | | ||| | || || || |||||||||||||| ||||| |||| ||||||||||
Sbjct 201 GTGGAGACCGAGGAACTTACTGTTGAAGAGAGGAATCTCTTGTCTGTTGCTTACAAGAAC 260
Query 172 GTAATCGGAGCAAGAAGAGCTTCGTGGAGGATAATGTCATCGATCGAGCAGAAAGAAGAG 231
|| || || || || |||||||| |||||||| || || || || |||||||| |||||
Sbjct 261 GTGATTGGTGCTAGGAGAGCTTCTTGGAGGATTATCTCTTCCATTGAGCAGAAGGAAGA- 319
Query 232 T-CCAAAGGC-A-A-TGAATCAAATG-TGAAACATATCAAGGGTTATC-GCCAAAAGGTT 285
| || ||| | | || ||| ||| | | |||||||| ||| | | ||| ||
Sbjct 320 TAGCAGGGGCAACAGTG-ATC--ATGTTTCGA-TTATCAAGGATTA-CAGAGGCAAGATT 374
Query 286 GAAGA-TGAGCTC-GCTAACATTTGCCAAGACATTCT-CTCCATCATTGA-TCAGCATCT 341
||| | ||||||| || || ||||| | | |||| | || || |||| | |||||
Sbjct 375 GAA-ACTGAGCTCAGC-AAGATTTGTGATGGCATTTTGAACCTTC-TTGAGGC-TCATCT 430
Query 342 CATCCCTCAC-GCTACCTCAGG-GGAAG-CTACCGTCTTCTA-CTACAAGATGAAAGGAG 397
||| ||| | ||| || || | || | | || || || || |||||||| ||||
Sbjct 431 CATTCCT-GCTGCT-TCTTTGGCTG-AGTCCAAAGTTTTTTACCT-GAAGATGAAGGGAG 486
Query 398 ATTATTACCGTTA-CTTGGCTGAGTTTAAGAC-CGAGCAAGAGAGGAAGGAAGCTGCTGA 455
||||| | || || ||| ||||| || ||||| | || |||||||| ||||||||||
Sbjct 487 ATTATCATCGGTACCTT-GCTGAATTCAAGACTGGTGC-TGAGAGGAAAGAAGCTGCTG- 543
Query 456 ACAG-TCGCTTAAAGGCTATGAGGCTG--CAACACA-AGCTGCAAGCACTGAGCTTCCTT 511
| || | ||| | ||| || ||| || | | ||| | | |||| || ||
Sbjct 544 AGAGCACTCTTGTTGCCTACAAGTCTGCTCAGGATATTGCT-CTTG--CTGATCTGGCTC 600
Query 512 CGACCCATCCGATTC-GTCTTGGCCTTGCTCTTAACTTCTCTGTTTTCTACTACGAGAT- 569
| || || || | || | || || ||||||||||||||||||||||||||||| |||||
Sbjct 601 CCACTCA-CCCAATCAGACTGGGGCTTGCTCTTAACTTCTCTGTTTTCTACTATGAGATT 659
Query 570 CATGAACTC-TCCTGAAAGAGCTTGCCATT-TGGCGAAGCAAGCCTTCGATGAGGCGAT- 626
| | ||||| || ||| | || || | | | || ||||| || || |||||||| ||
Sbjct 660 C-TCAACTCATC-TGATCGTGCGTGT-AGTCTCGCAAAGCAGGCTTTTGATGAGGCAATC 716
Query 627 TGCGGAGTTAGATAC-TCTAAGTGAGGAGTCGTACAAGGACAGCACTTTGATCATGCAGC 685
| ||||| |||| || | | | ||||| || ||||||||||| || |||||||||||||
Sbjct 717 T-CGGAGCTAGACACAT-TGGGAGAGGAATCATACAAGGACAGTACATTGATCATGCAGC 774
Query 686 TCCTGAGAGACAACCTCACCCTCTGGACTTCTGA 719
| || | ||||| ||||||||||||||||||||
Sbjct 775 TTCTCCGTGACAATCTCACCCTCTGGACTTCTGA 808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5