BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313345
Length=1233
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26440.3 | Symbols: ATUPS5, UPS5 | ureide permease 5 | chr1:... 1984 0.0
> AT1G26440.3 | Symbols: ATUPS5, UPS5 | ureide permease 5 | chr1:9143967-9146049
REVERSE LENGTH=1472
Length=1472
Score = 1984 bits (1074), Expect = 0.0
Identities = 1188/1241 (96%), Gaps = 15/1241 (1%)
Strand=Plus/Plus
Query 1 ATGATGATAGCTCAAGGATTGGGAATATATGTGGTGGAGAGCAAAGGAGGAGCAATTTTT 60
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 89 ATGATGATAGCTCAAGAATTGGGAATATATGTTGTGGAGAGCAAAGGAGGAGCAATATTA 148
Query 61 TGTATATTGCTTTCTCTGCTCTGTTTAGGCACTTGGCCTGCTCTTATGGCTCTTCTTGAA 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TGTCTATTGCTTTCTCTGCTCTGTTTAGGCACTTGGCCTGCTCTTATGGCTCTTCTTGAA 208
Query 121 CGGCGTGGTCGTCTCCCACAACATACTTATCTTGATTATTCCATCACTAACTTCTTGGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 209 CGGCGTGGTCGTCTCCCACAACATACTTATCTTGATTATTCCATCACTAACTTTTTGGCT 268
Query 181 GCAATCTTTATAGCCTTTGTGTTTGGTGGGCTTGGTGAAAGTACACATGAGGCACCAAGT 240
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 269 GCAATCTTTATAGCCTTTGTGTTTGGTGGGATAGGTGAAAGTACACATGAGGCACCAAGT 328
Query 241 TTCATTACACAACTCACTCAGATTCAAGATAATTGGCCCTCTGTGTTGTTTGCAATGGCG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 TTCATTACACAACTCACTCAGATTCAAGATAATTGGCCCTCTGTGTTGTTTGCAATGGCG 388
Query 301 GGTGGGGTGGGTTTAAGTATTGGGAATCTTGCTACTCAGTATTCTTTAGCTTTTGTTGGT 360
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 389 GGTGGGGTTGGTTTAAGTATTGGAAACCTTGCTACTCAGTATTCTTTAGCTTTTGTTGGT 448
Query 361 CTGTCTGTTACAGAAGTGACAACTGCGAGCATCACCGTTGTTGTAGGCACCACTGTCAAT 420
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 449 CTGTCTGTTACAGAAGTGACAGCTGCGAGCATCACCGTTGTTGTAGGCACTACTGTCAAT 508
Query 421 TACTTTTTGGACAATAGATTGAACCGAGCTGATATTCTTTTCTCTGGTGTTGGCTGCTTC 480
|||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 509 TACTTTTTGGACAACGGATTGAACAGAGCTGATATTCTTTTCTCTGGTGTTGGTTGCTTC 568
Query 481 TTGGTAGCTGTTTGTCTTGGTTCTGCGGTTCACTCTTCCAATTCTGCTGATAT-AGAGGC 539
||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||
Sbjct 569 ATGGTAGCTGTTTGTCTTGGTTCTGCTGTTCACTCTTCCAATTCTGCTGATATCA-AGGC 627
Query 540 GAAACTCGGAAAACTCTCAGGGGATTGTGAAACTGTGGA-TCCGGAAGAGTGCCAGAGAC 598
|||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 628 GAAACTCGGAAAACTCTCAGGGGATTGTGAAACTGT-GACCCCTGAAGAGTGCCAGAGAC 686
Query 599 TATTTGGAGT---------AGAAGAAGAAGAAAAAGAGATGGAGAATGTTAAGGAAGGGA 649
|||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 687 TATTTGGAGTAGAAGAAGAAGAAGAAGAAGAAAAAGAGATGGAGAATGTAAAGGAAGGGT 746
Query 650 CTGCAGCTTTTCTTATAGCACTCGAAAACACAAGAGCAATTAAAGTGTTAGGAAAGAGCA 709
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 747 CTGCAGCTTTTCTTATAGCACTCGAAAACAAAAGAGCAATCAAAGTGTTAGGAAAGAGCA 806
Query 710 TGGTTGTTGGTCTGGGGATAACTTTCTTTGCAGGACTTTCTTTCTCATTGTTCTCACCAC 769
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 807 TGGTTGTTGGTCTGGGAATAACTTTTTTTGCAGGACTTTCTTTCTCATTGTTCTCACCAC 866
Query 770 TATTCAACCTTGCAACAAACGATCAATGGCACACTCTAAAACAAGGCGTTCCCAAGCTGA 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 TATTCAACCTTGCAACAAACGATCAATGGCACACTCTAAAACAAGGCGTTCCCAAGCTGA 926
Query 830 TTGTCTACACCGCGTTCTTCTACTTCTCACTATCTTGCTTTGTAATCGCCGTCGCTCTCA 889
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 927 TTGTCTACACTGCGTTCTTCTACTTCTCACTATCTTGCTTTGTAATCGCGGTCGCTCTCA 986
Query 890 ACATTAGGTTCCTGTACAAACCTGTGCTCGACTCACCAAGATCTTCCTTTA-AGGAATAC 948
||||||| |||||||||||||||||||| |||||||||||||||||||||| || |||||
Sbjct 987 ACATTAGTTTCCTGTACAAACCTGTGCTAGACTCACCAAGATCTTCCTTTAGAG-AATAC 1045
Query 949 CTGAGTGACTGGAACGGAAGAGGTTGGGCACTTGCAGCTGGATTGTTTTGTGGGTTTGGT 1008
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1046 CTGAGTGACTGGAACGGAAGAGGTTGGGCACTTGCAGCTGGATTGTTATGTGGGTTTGGT 1105
Query 1009 AACGGTCTTCAGTTCATGGGTGGACAAGCTGCAGGATATGCAGCCTCAGATGCTGTTCAG 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 AACGGTCTTCAGTTCATGGGTGGACAAGCTGCAGGATATGCAGCCTCAGATGCTGTTCAG 1165
Query 1069 GCACTTCCTTTGGTATCGACTTTTTGGGGGATATATCTTTTTGGGGAGTATAGGAGATCA 1128
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1166 GCACTTCCTTTAGTATCGACTTTTTGGGGGATATATCTGTTTGGGGAGTATAGGAGATCA 1225
Query 1129 TCTCCGCGAACATATGCTTTGCTTATTGGAATGCTGGTGATGTTCACTGTTGCTGTGGGG 1188
||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1226 TCTACGCGAACATATGCTTTGCTTGTTGGAATGCTGGTGATGTTTACTGTTGCTGTGGGG 1285
Query 1189 CTTCTAATGGCCTCGGCTGGGAAAAGAGAGACGCGATTTAC 1229
||||||||||||||||||||| |||||||||||||||||||
Sbjct 1286 CTTCTAATGGCCTCGGCTGGGGAAAGAGAGACGCGATTTAC 1326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60592057815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5