BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg313365

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G26140.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   662    0.0  


> AT1G26140.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G68700.1); 
Has 35 Blast hits to 35 proteins in 8 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9038708-9039540 
REVERSE LENGTH=489
Length=489

 Score =  662 bits (358),  Expect = 0.0
 Identities = 453/496 (91%), Gaps = 17/496 (3%)
 Strand=Plus/Plus

Query  1    ATGCCGGTCCTCAGCTTCGTCTTGTCTGAATCTGTGGATAAACAAGA-AGAGAAATGGGA  59
            |||||||||||||||||||||||||| |||||||||| |||||| || || |||||||||
Sbjct  1    ATGCCGGTCCTCAGCTTCGTCTTGTCCGAATCTGTGGGTAAACATGATAG-GAAATGGGA  59

Query  60   CGAGAAAAATGTTATGTCGGACACAAATG--CGGATTCTATTATCTTCCTGC-----TTT  112
            |||| |||||||| ||| ||||||   ||  ||   |||||| |||||||||     |||
Sbjct  60   CGAGCAAAATGTTGTGTTGGACAC---TGCACGTCCTCTATT-TCTTCCTGCTGTGATTT  115

Query  113  TTGTGCATATCACAGTAATGGAAGAAGATTGTGGTGCATTTGCAGCAGACTGTGTTGTCC  172
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  116  TTGTGCATATCAGAGTAATGGAAGAAGATTGTGGTGCATTTGCAGCAGACTGTGTTGTCC  175

Query  173  TGTCATGTTGCTGTCAATGCCTTGTCTTACAAGTCAGTGTCTTCGTCTTCTTCAAGATCC  232
            | ||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct  176  TCTCATGTTGCTGCCAGTGCCTTGTCTTACAAGTCAGTGTCTTCATCTTCTTCAAGATCC  235

Query  233  CTCGTAAAGTTGCCAAGAAGATGAAGAAGTTTGTGAAGAGAAGATGTGGAAAAACCTTGC  292
            |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  236  CTCGTAAACTTGCCAAGAAGATGAAGAAGTTTGTGAAGAGAATATGTGGAAAAACCTTGC  295

Query  293  AACCAACAATGGAAAATGTCAAAGAGGAGCATTGGTCTGGGAATGGGTTTGCCTTTGAAG  352
            |||||||||||||  ||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct  296  AACCAACAATGGAGGATGTCAAAGAGGAGCATTGGTCTGGAAATGGGTTTCCCTTTGAAG  355

Query  353  ATGGCTCATCAAGACTAAATT-GCATGGAAGATATTGA-AGGAATGTTGGAGGAACTGTC  410
            | |||||||||||| | |||| || | ||||||||||| || ||||||| ||||||||||
Sbjct  356  AAGGCTCATCAAGA-TCAATTTGCTTCGAAGATATTGATAG-AATGTTGCAGGAACTGTC  413

Query  411  CATGAACAAAGGGTTCTTGTTTGGAAGCTTCTGGCGTCATGAAGATTCTTCTGACATTTT  470
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  414  CATGAACAAAGGGTTCTTGTTTGGAAGCTTCTGGCGCCATGAAGATTCTTCTGACATTTT  473

Query  471  CGATTTCAAATCATAA  486
            ||||||||||||||||
Sbjct  474  CGATTTCAAATCATAA  489



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23157941767


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5