BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313369
Length=3186
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68750.1 | Symbols: ATPPC4, PPC4 | phosphoenolpyruvate carbo... 1812 0.0
> AT1G68750.1 | Symbols: ATPPC4, PPC4 | phosphoenolpyruvate carboxylase
4 | chr1:25822942-25828107 REVERSE LENGTH=3102
Length=3102
Score = 1812 bits (981), Expect = 0.0
Identities = 1607/1911 (84%), Gaps = 35/1911 (2%)
Strand=Plus/Plus
Query 1295 GTCTTACTCCGCGAGGTTCTTCCTCCTCGAGTTCTCAACTTC-T-T-CAGAAAAAACTAT 1351
|||||||| | |||||||||| ||| || | ||||||||||| | | |||| ||||||||
Sbjct 1208 GTCTTACTTCTCGAGGTTCTTTCTCATCTACTTCTCAACTTCTTCTCCAGAGAAAACTAT 1267
Query 1352 TTGCA-GAGTCTCAGAATGGGAGGACCAGTTTTCAGAAGCTATTAGAACCAACTCCACCC 1410
||| | || |||||| ||||| ||| ||||| || |||||| |||||||| ||||||
Sbjct 1268 TTG-AGGAATCTCAGGTTGGGAAGACTAGTTTCCAAAAGCTACTAGAACCACCTCCACTT 1326
Query 1411 AAACGGGCTGGAA-TAGCTCCTTATCGGATTGTTCTTGGCGAAGTAAAGGAAAAGCTTCT 1469
||||| ||||||| | ||||||||||| ||||||||||| |||||||| ||||||||| |
Sbjct 1327 AAACGAGCTGGAAGT-GCTCCTTATCGTATTGTTCTTGGAGAAGTAAAAGAAAAGCTTGT 1385
Query 1470 GAAGACGCGGAGACTTCTGGAACTTCTTCTTGAGGGTCTTCCTTGTGAATATGATCCTTG 1529
|||||| | |||||||| ||||||||| ||||||||||||||||||| ||||| |||
Sbjct 1386 GAAGACAAGAAGACTTCTTGAACTTCTTATTGAGGGTCTTCCTTGTGAGTATGACCCTAA 1445
Query 1530 GGATTACTATGAAACATCGGACCAACTTCTAGAACCGCTACTCCTCTGCTATGAATCTTT 1589
| | |||||||||||| || || ||||| ||||| | |||||||| || |||||| |
Sbjct 1446 AAACTCCTATGAAACATCAGATCAGCTTCTTGAACCATTGCTCCTCTGTTACGAATCTCT 1505
Query 1590 GCAATCATCTGATGC-CGGAGTATTAGCTGATGGGCGGCTTTCCGATCTGATCCGTAGAG 1648
||||||||| | ||| || ||| |||||||||| || ||| | |||||||| |||||||
Sbjct 1506 GCAATCATCGGGTGCTAGG-GTACTAGCTGATGGACGACTTGCTGATCTGATTCGTAGAG 1564
Query 1649 TTGCTACCTTTGGCATGGTTTTAATGAAACTTGATTTGCGCCAGGAAGCTGCAAGGCATT 1708
|| |||||||||| |||||||| ||||||| || || ||||||||||||||||| ||||
Sbjct 1565 TTTCTACCTTTGGAATGGTTTTGGTGAAACTCGACTTACGCCAGGAAGCTGCAAGACATT 1624
Query 1709 CTGAAGCTTTGGATGCAATTACGACATACTTGGACATGGGCACATATAGTGAATGGAATG 1768
|||||||||||||||||||||| ||||||||||| ||||| || |||||||||||| |||
Sbjct 1625 CTGAAGCTTTGGATGCAATTACAACATACTTGGATATGGGTACTTATAGTGAATGGGATG 1684
Query 1769 AAGAGAAGAAACTAGAGTTTTTGACTAGAGAATTGAAAGGGAAACGACCCCTTGTCCCTC 1828
||||||||||| |||| |||||||| |||||| | |||||||||||||| ||||| |||
Sbjct 1685 AAGAGAAGAAATTAGAATTTTTGACAAGAGAACTAAAAGGGAAACGACCTCTTGTTCCT- 1743
Query 1829 CAA-ATATTGAGGTTGGTCCTGAAGTAAAAGAAGTACTAGACACCTTCCGGGTTGCTGCT 1887
||| |||| ||||||||||||| || ||||||||| | ||||| ||||| || ||||||
Sbjct 1744 CAATGTATTAAGGTTGGTCCTGACGTCAAAGAAGTATTGGACACATTCCGAGTCGCTGCT 1803
Query 1888 GAGCTAGGAAGTGAATCACTTGGAGCTTACGTGATTTCCATGGCCTCAAATGCAAGTGAT 1947
|| || ||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct 1804 GAACTTGGAAGTGAATCACTTGGCGCTTACGTTATTTCTATGGCTTCAAATGCAAGTGAT 1863
Query 1948 GTCCTCGCTGTGGAACTTCTGCAGAAAGATGCTCGTCTTGCCGTCAGTGGTGAGC-TGGG 2006
|||||||||||||||||||| || ||||||||||| ||||| | | | | || | |||
Sbjct 1864 GTCCTCGCTGTGGAACTTCTTCAAAAAGATGCTCGACTTGCTTTAACTAGCGAACATGGA 1923
Query 2007 AAGGCCATGTCCTGCTGGAACACTGCGAGTGGTGCCTCTTTTTGAAACGGTGAAAGATTT 2066
|| |||||||||| |||||| || |||||||| |||||||||||||||||||| |||||
Sbjct 1924 AAA-CCATGTCCTGGTGGAACGCTACGAGTGGTACCTCTTTTTGAAACGGTGAATGATTT 1982
Query 2067 AAGAGATGCTGGCTCCGT-GATTAGAAAATTGCTATCAATCGATTGGTACAGAGAACACA 2125
||||| ||||| ||| | ||| || |||||||| |||||||||||||| || |||||||
Sbjct 1983 AAGAGCCGCTGG-TCCTTCGATAAGGAAATTGCTCTCAATCGATTGGTATAGGGAACACA 2041
Query 2126 TCCAAAAGAACCACACCGGCCACCAAGAGGTGATGGTTGGATATTCGGATTCTGGAAAAG 2185
||||||||||||||| ||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 2042 TCCAAAAGAACCACAACGGTCACCAAGAGGTGATGGTTGGATACTCTGATTCTGGAAAAG 2101
Query 2186 ATGCTGGACGATTTGCTGCAGCATGGGAACTCTACAAAGCCCAGGAGGATGTTGTGGCTG 2245
|||||||||| ||| ||||||||||||||||||||||||| || || ||||||| ||||
Sbjct 2102 ATGCTGGACGTTTTACTGCAGCATGGGAACTCTACAAAGCTCAAGAAAATGTTGTTGCTG 2161
Query 2246 CTTGCAATGAATTTGGAATCAAAATTACCTTATTCCATGGACGAGGAGGCAGTATTGGCC 2305
|||| |||||||||||||||||||| || ||||| |||||||||||||| || ||||| |
Sbjct 2162 CTTGTAATGAATTTGGAATCAAAATAACATTATTTCATGGACGAGGAGGAAGCATTGGTC 2221
Query 2306 GAGGTGGTGGCCCAACTTATCTTGCCATACAATCCCAACCTCCAGGGTCTGTAATGGG-T 2364
| |||||||| ||||| ||||| || || || |||||||| ||||| ||||||||||| |
Sbjct 2222 GTGGTGGTGGTCCAACCTATCTCGCTATTCAGTCCCAACCACCAGGCTCTGTAATGGGCT 2281
Query 2365 ACTCTCCGTTCCACAGAGCAAGGCGAGATGGTGCAAGCCAAGTTTGGGCTACCACAGACG 2424
|| | ||||| || |||||||| |||||||| ||||| ||||||||| ||||||| |||
Sbjct 2282 -CTTTGCGTTCAACTGAGCAAGGTGAGATGGTTCAAGCTAAGTTTGGGATACCACAAACG 2340
Query 2425 GCTGTTAGGCAGCTAGAGATTTACACAACCGCAGTGCTGCTTGCTACATTGCAGCCTCCT 2484
||||||||||| |||||| | ||||||||||| || || || ||||| || ||||||||
Sbjct 2341 GCTGTTAGGCAACTAGAGGTATACACAACCGCGGTTCTACTCGCTACCTTAAAGCCTCCT 2400
Query 2485 CAGCCACCAAGAGAAGAGAAATGGCGGAGCCTAATGGAAGATATCTCAA-ACATCAGCTG 2543
|||||||| |||| || |||||||| | |||||||||||| ||||| | ||||| ||
Sbjct 2401 CAGCCACCTCGAGAGGAAAAATGGCGAAACCTAATGGAAGAAATCTCTGGA-ATCAGTTG 2459
Query 2544 CCAAAACTACAGGAGCACGGTCTATGAAAACCCAGAATTCCTCTCCTACTTCCAAGAGGC 2603
|||| |||| || ||||| || |||||||||||||| || || || || || || |||||
Sbjct 2460 CCAACACTATAGAAGCACAGTGTATGAAAACCCAGAGTTTCTATCTTATTTTCATGAGGC 2519
Query 2604 AACACCTCAGGCCGAGCTCGGTTTCCTCAACATAGGAAGCCGGCCAACACGAAGAAAGAG 2663
|||||| || || || || ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 2520 AACACCGCAAGCAGAACTTGGTTTCCTCAATATAGGAAGCCGACCAACACGAAGAAAGAG 2579
Query 2664 CTCATCAG-GGATT-GGACATCTCAGAGCTATCCCTTGGGT-TTTCGCCTGGACACAGAC 2720
||| | || ||| | ||||||||| |||||||||||||||| ||| || ||||| || ||
Sbjct 2580 CTC-T-AGTGGAATAGGACATCTCCGAGCTATCCCTTGGGTCTTT-GCTTGGACTCAAAC 2636
Query 2721 AAGGTTTGTCCTTCCAGCTTGGCTCGGTGTAGGAGCTGGTCTGAAAGG-AGTCTGTGAGA 2779
||||||||| |||||||||||||| |||||||| |||||| | ||||| ||| | |||||
Sbjct 2637 AAGGTTTGTTCTTCCAGCTTGGCTTGGTGTAGGGGCTGGTTT-AAAGGGAGTTTCTGAGA 2695
Query 2780 AGGGTCACGCTGATGACCTCCAAGCA-ATGTACAAAGAATGGCCCTTCTTTCAGTCGACC 2838
||||||| || ||||| || ||| | ||||||||||||||||| || |||||||| |||
Sbjct 2696 AGGGTCATGCGGATGATCTTAAAG-AGATGTACAAAGAATGGCCATTTTTTCAGTCCACC 2754
Query 2839 ATAGACCTTATAGAGATGGTGTTAGCTAAAGCAGATATCCCAAT-AGCCAAACACTACGA 2897
| || ||||||||||||||||||||||||||||| || ||||| | |||||||||||||
Sbjct 2755 CTTGAACTTATAGAGATGGTGTTAGCTAAAGCAGACATTCCAATGA-CCAAACACTACGA 2813
Query 2898 TGAAGAGCTTGTCTCAGAGAACAGAAGAGGAATTGGTAGTGAGCTCAGAAAGGAATTGCT 2957
||| | ||||| || ||||| ||||||||| |||| | |||||| ||||| ||| | |
Sbjct 2814 CGAACAACTTGTGTCTGAGAAAAGAAGAGGACTTGGCACTGAGCTAAGAAAAGAACTAAT 2873
Query 2958 GACGACTGAGAAGTATGTGCTTGTGATAAGCGGTCATG-GAAAGCTCTCGGAGAACAACC 3016
||| ||||||||||| || ||||||||||| ||||| | |||| |||| | || ||||
Sbjct 2874 GACTACTGAGAAGTACGTTCTTGTGATAAGTGGTCACGAGAAA-CTCTTGCAGGACAATA 2932
Query 3017 GGAGCCTGAA-AAAGCTGATAGAGAGTAGACTTCCGTATCTGAACCCCATGAACATGCTG 3075
|||| |||| ||| || || || ||||||||||||||||| ||| | ||||||||| |
Sbjct 2933 AGAGCTTGAAGAAA-CTCATTGATAGTAGACTTCCGTATCTCAACGCAATGAACATGTTA 2991
Query 3076 CAGGTAGAGATCCTCAAGAGGCTAAGACGTGATGACGACAACAACAAGCTCAGGGATGCA 3135
|| || || || || |||||||||||||||||||| || ||||| ||||| || |||||
Sbjct 2992 CAAGTTGAAATTCTTAAGAGGCTAAGACGTGATGAAGATAACAATAAGCTAAGAGATGCT 3051
Query 3136 TTGCTCATCACCATTAACGGTATTGCAGCTGGCATGAGGAACACTGGTTAA 3186
||||| ||||| || || |||||||| || || ||||| || || ||||||
Sbjct 3052 TTGCTTATCACAATCAATGGTATTGCTGCAGGAATGAGAAATACCGGTTAA 3102
Score = 941 bits (509), Expect = 0.0
Identities = 829/984 (84%), Gaps = 20/984 (2%)
Strand=Plus/Plus
Query 1 ATGACGGATACGACGGACGATATCGCAGAGGAGATTTCGTTTCAGAGCTTCGAGGATGAC 60
|||||||| || || ||||||||||||||||| || || || || |||||||| ||||||
Sbjct 4 ATGACGGACACAACAGACGATATCGCAGAGGAAATCTCATTCCAAAGCTTCGAAGATGAC 63
Query 61 TGTAAATTGCTCGGAAGTCTCTTCAACGACGTCTTGCAGAGAGAAGTCGG-TACCGATTT 119
|| ||||||||||| ||||||||| | || || || || || ||||| || ||| | ||
Sbjct 64 TGCAAATTGCTCGGTAGTCTCTTCCATGATGTGTTACAAAGGGAAGTTGGCAACCCA-TT 122
Query 120 CATGGAGAAAA-TCGAACGGACTCGGATTCTCGCTCAGAGTGCTTTAAATCTT-CGTTTG 177
|||||| |||| ||||||| | ||||||||| ||||||||||| |||||| || ||| ||
Sbjct 123 CATGGA-AAAAGTCGAACGCATTCGGATTCTTGCTCAGAGTGCGTTAAAT-TTGCGTATG 180
Query 178 GCTGGTATTGAAGATACGGCAGAGCTTTTGGAGAAGCAATTGACTTCTGAAATAT-CAAA 236
||||||||||| ||||| ||| | ||||||||||||||||||||| |||||||| ||||
Sbjct 181 GCTGGTATTGAGGATACCGCAAACCTTTTGGAGAAGCAATTGACTAGTGAAATATCCAAA 240
Query 237 GATGTCACTGGAGGAAGCATTGACACTGGCTCGTGCGTTCAGC-CATTTTCTGAATC-TG 294
||| |||| || ||||| || || |||||||| | |||| | |||| ||| || | |
Sbjct 241 -ATGCCACTAGAAGAAGCCTTAACGTTGGCTCGTACATTCA-CTCATTCTCTTAA-CTTA 297
Query 295 ATGGGCATTGCCGAAACCCATCACAGAGTTCGTAAAGTCTGTAACGTTCCACAACTTTCA 354
||||||||||| || || ||||||||| | | |||||| ||||||| |||||||| ||
Sbjct 298 ATGGGCATTGCAGACACTCATCACAGAATGCACAAAGTCCATAACGTTACACAACTTGCA 357
Query 355 AGATCATGCAACGATGTATTCAGTAAGCTATTGCAAGGTGGAATTTCCCCAGATGAGCTT 414
||||| || | ||| ||||||| ||||||||||| ||||||| || ||||| || |||
Sbjct 358 AGATCTTGTGATGATATATTCAGCCAGCTATTGCAAAGTGGAATCTCTCCAGACGAACTT 417
Query 415 TACGACACAGTTTGCAAGCAGGAAGTTGAAATTGTTCTTACTGCGCACCCCACTCAAATC 474
|| | || |||||||| ||||| || ||||||||||||||||| || || || |||||
Sbjct 418 TATAAAACTGTTTGCAAACAGGAGGTCGAAATTGTTCTTACTGCTCATCCTACCCAAATA 477
Query 475 AATCGGCGAACTTTGCAGTACAAACATATTAGAATGGCTCATCTTCTAGAATACAACGA- 533
||||| |||| ||||||||||| ||||||||||| ||||||||||||||||| ||| |
Sbjct 478 AATCGAAGAACCTTGCAGTACAAGCATATTAGAATTGCTCATCTTCTAGAATATAAC-AC 536
Query 534 TAGACCAGACCTTGGAC-TTGAAGATCGAGAAACGGTTATTGAGGATCTGGTTAGGGAGA 592
|||| |||| || | | |||||||||| |||||| | ||||| ||| ||||||| ||||
Sbjct 537 TAGATCAGATCTAAG-CGTTGAAGATCGCGAAACGCTCATTGAAGATTTGGTTAGAGAGA 595
Query 593 TAACTTCACTGTGGCAGACTGATGAACTTAGACGTCAGAAACCTACTCCTGTTGATGAAG 652
| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 596 TTACTTCACTGTGGCAAACTGATGAGCTTAGACGTCAGAAACCTACTCCAGTTGATGAAG 655
Query 653 CTAG-GTCTGGTCTGAACATTGTTGAGCAATCTCTTTGGAAAGCTGTACCACATTACTTG 711
|||| | ||||||| ||||| || |||||||| ||||||||||| |||||||| ||| ||
Sbjct 656 CTAGAG-CTGGTCTAAACATAGTGGAGCAATCCCTTTGGAAAGCAGTACCACAATACCTG 714
Query 712 CGTCGTGTCAGCAGTTCTTTGAAGAAGCTCACGGGGAAACCACTCCCATTAACTTGCACC 771
||||||||||||| ||| ||||||||| | || ||||| ||||| ||| |||| |||||
Sbjct 715 CGTCGTGTCAGCAATTCCTTGAAGAAGTTTACAGGGAAGCCACTTCCACTAACATGCACT 774
Query 772 CCAAT-AAAGTTTGGTTCCTGGATGGGTGGTGATAGAGATGGAAATCCAAATGTCACGGC 830
|| || ||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 775 CCTATGAAA-TTTGGTTCTTGGATGGGAGGTGATAGAGATGGAAATCCAAATGTCACGGC 833
Query 831 AAAGGTCACCAAAGAAGTATCGCTCATGTCTAGATGGATGGCTATTGATCTGTACATAAG 890
||||||||| ||||||||||| ||| ||||||||||||||||||||||| ||||||||||
Sbjct 834 AAAGGTCACGAAAGAAGTATCTCTCTTGTCTAGATGGATGGCTATTGATTTGTACATAAG 893
Query 891 AGAGATCGATAGCTTAAGATTTGAATTGTCTATGAATCGATGCAGCGATAGATTGTCCAG 950
|||| | |||||||||||||||||||| |||| | |||||||||| ||||| || || ||
Sbjct 894 AGAGGTTGATAGCTTAAGATTTGAATTATCTACGGATCGATGCAGTGATAGGTTTTCAAG 953
Query 951 ATTGGCAGATGAAATTCTTGAAAA 974
||| || ||| |||||||||||||
Sbjct 954 ATTAGCTGATAAAATTCTTGAAAA 977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 158477372937
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5