BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313371
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26100.1 | Symbols: | Cytochrome b561/ferric reductase tran... 1147 0.0
> AT1G26100.1 | Symbols: | Cytochrome b561/ferric reductase transmembrane
protein family | chr1:9022542-9024081 REVERSE LENGTH=885
Length=885
Score = 1147 bits (621), Expect = 0.0
Identities = 681/711 (96%), Gaps = 0/711 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAGTGTGGATTCTTCAAGACTATCACTGGTCTTGTTTGCGAGACTGTCCGGTTTA 60
||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGTGTAGATCCTTCAAGACTATCATTGGTCTTGTTTGCGAGACTGTCCGGTTTA 60
Query 61 GTAGTCGCAGTTTCGGTTCTGTACTGGGCTCTCTTCCTCCCTAATCAAGGCCTCAGCTAC 120
|||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||
Sbjct 61 GTAGTCGCAGTTTCGGTTCTGTACTGGGCTCTCTTCCTGCCTAATCTAGGACTCAGCTAC 120
Query 121 TCTACTCTTCATCCTCTGCTGATGGTGATTGGCTTCATTCTTGTAAGTGGAGAAGCGATT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTACTCTTCATCCTCTGCTGATGGTGATTGGCTTCATTCTTGTAAGTGGAGAAGCGATT 180
Query 181 CTGATACACAAATGGTTGCCTGGTTCAAGGAAAACGAAGAAAGCTGTTCATTTATGGCTA 240
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 CTGATACACAGATGGTTGCCTGGTTCAAGGAAAACAAAGAAAGCTGTTCATTTATGGCTA 240
Query 241 CAAGGAGTGGCATTGGCTTCTGCTGTGTTTGGAATTTGGACAAAGTTCCATTACCAACGT 300
|||||| |||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 241 CAAGGAATGGCATTGGCCTCTGCAGTGTTTGGGATTTGGACAAAGTTCCATTACCAACGT 300
Query 301 GGAGTTTTCGCCAATTTCTACAGTCTCCATTCTTGGATGGGTTTACTCTCTGTTTCTCTC 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 GGAGTTTTCGCCAATTTCTACAGTCTCCATTCTTGGATGGGTTTGCTCTCTGTTTCTCTC 360
Query 361 TTCGCTGCCCAGTGGGTGACTGGGTTCATGAGTTTCTGGCATAGAGGAGAAGTACGGACA 420
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 TTCGCTGCCCAGTGGGTGACTGGGTTCATGAGCTTCTGGCATAGAGGAGAAGTACGGACT 420
Query 421 ACAAGAACCACGTTTCTTCCTTGGCATGTATTCCTCGGACTCTATACCTATGGTTTAGCC 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACAAGAACCACGTTTCTTCCCTGGCATGTATTCCTCGGACTCTATACCTATGGTTTAGCC 480
Query 481 ATTGCCACCGCTGAGACCGGATTGCTTGAGAAACTGTCGTTTCTTCAGACCAAGAGGAAT 540
|||||||| |||||||||||| |||||||||||||| |||| ||||||||||||||||||
Sbjct 481 ATTGCCACAGCTGAGACCGGACTGCTTGAGAAACTGACGTTCCTTCAGACCAAGAGGAAT 540
Query 541 GTCCCCAGACGCGGTTCTGAATCAATGACTGTTAATGGTTTAGGGCTTGGCTTGGCTCTA 600
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 GTCCCCAGACGCGGTTCTGAATCAATGACTGTCAATGGTTTAGGGCTTGGCTTGGCTCTA 600
Query 601 CTCTGTGGTATCGTTATAACTGCTGCTGTTTTGCCAAAGTATCAGAGCCATTCTGGTAAT 660
||| || | || ||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 601 CTCGGTTGCATTGTTATAACTGCTGCTATTTTGCCAAAGTATCAGAGCCATTCTCGTGAT 660
Query 661 GAGAAACTTGTTTATTCATCTCAAGATCGTCCCAAATGTTTGTCTTCTTGA 711
|||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 GAGAAACTCGTTTATTCATCTCAAGATCGTCCTAAATGTTTGTCTTCTTGA 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34460624842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5