BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313379
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25500.2 | Symbols: | Plasma-membrane choline transporter f... 2466 0.0
> AT1G25500.2 | Symbols: | Plasma-membrane choline transporter
family protein | chr1:8955308-8957949 REVERSE LENGTH=1752
Length=1752
Score = 2466 bits (1335), Expect = 0.0
Identities = 1423/1467 (97%), Gaps = 0/1467 (0%)
Strand=Plus/Plus
Query 1 ATGAGTGAATCCACTAACAGCGTCTCTCCTTCCTCTGATTACGCCTCCATCTCCTCCGGC 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 ATGAGTGACTCCACTAACAGCGTCTCTCCTTCCTCTGATTACGCCTCCATCTCCTCCGGC 216
Query 61 GACCAGAGTCTTCAGCGGAGTCGAAGGAGTGGAGATGGAAACCGAGCCATTGTCCGTGAG 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 217 GACCAGAGTCTTCAGCGGAGTCGAAGGAGTGGAGATGGAAACCGAGCCGTTGTGCGTGAG 276
Query 121 TCTCGCCACTGGCATGATGTATTCTGGTCAGCCATCTTTGTGATCCACATGATTTGTTTG 180
|| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 277 TCCCGCCATTGGCATGATGTATTCTGGTCAGCCATCTTTGTGATCCACTTGATTTGTTTG 336
Query 181 GGATTTGTGCTCGCGGTGCTTGGACTCAATAGGTTTAGAATATCAGATAGGTTAAACATC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 GGATTTGTGCTCGCGGTGCTTGGACTCAATAGGTTTAGAATATCAGATAGGTTAAACATC 396
Query 241 GATAGGTACACTCAAGGGTTCTTGGAGAATCATAAAGGTCTGACTGAGGATTACTGGCCT 300
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 397 GATAGGTACACTCAAGGGTTCTTGGAGAATCATAAAGGTCTAACAGAGGATTACTGGCCT 456
Query 301 CTCTATGCTGTTGCTGGTGGGATTGGAGTCTTTATCAGTTGGGTTTGGTCATTGCTGCTT 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 457 CTCTATGCTGTTGCTGGTGGCATTGGAGTCTTTATCAGTTGGGTTTGGTCATTGCTGCTT 516
Query 361 GGCTCTTACGCCAATGAGATGATGAAAGTTTCGGTTCACATCTTAACAACTTATCTAGCT 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 517 GGCTCTTACGCCAATGAGATGATGAAAGTTTCGGTTCACATCTTAACAACCTATCTAGCT 576
Query 421 GTAGTTAGTGTACTATGTTTCTGGTGCAGACAGTTCTTCTGGGGCGGTGCATTCGCTGTT 480
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 577 GTAGTTAGTGTACTATGTTTCTGGTGCAGACTGTTCTTTTGGGGCGGTGCATTCGCTGTT 636
Query 481 GGAGCTCTGTTGCAGTTCTTGTATGTTATTTCAGTTATAGACAGACTTCCCTTCACGATG 540
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 637 GGATCTCTGTTGCAGTTCTTGTATGTTATTTCAGTTATAGACAGACTTCCTTTCACAATG 696
Query 541 CTGGTTCTGCGGAAAGCGCTGAAATTAGTTTGGGGACTTCCTAAGGTGATAATGGTGGCA 600
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 697 CTGGTCCTACGGAAAGCGCTGAAATTAGTCTGGGGACTTCCTAAGGTGATAATGGTGGCA 756
Query 601 CATGCTTTCACAGTAGTCATGCTTTTGTGGATGTCTCTATGGTCTTTTGGAGCAGCTGGT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 CATGCTTTCACAGTAGTCATGCTTTTGTGGATGTCTCTATGGTCTTTTGGAGCAGCTGGT 816
Query 661 GTTGTGGCATCGAGCATGGGTGATGAGGGACGATGGTGGCTTCTTCTGGTTCTTTCGGTT 720
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 817 GTTGTGGCATCGAGCATGGGCGATGAGGGACGATGGTGGCTTCTTGTGGTTCTTTCGGTT 876
Query 721 AGCTTATTCTGGACAGGCGCTGTGCTATGTAATACTGTCCATGTTATAGTTTCTGGGATG 780
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 877 AGCTTATTCTGGACAGGCGCTGTGCTATGTAACACTGTCCATGTTATAGTTTCTGGGATG 936
Query 781 GTGTTTCATGTTCTCTTTCACTGTGGTCAAGAAGAGTCATCATCGTTACCTCCTAGCTCT 840
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 937 GTGTTTCATGTTCTCTTTCACTGTGGTCAAGAAGAGTCATCATCGTTGCCTCCTAGCTCT 996
Query 841 TTAATAGACTCACTTAGGTATGCAGTGACAACATCTTTTGGGAGCATATGTTACGGGTCA 900
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 997 TTGGTAGACTCACTTAGGTATGCCGTGACAACATCTTTTGGGAGCATATGTTACGGTTCA 1056
Query 901 CTCTTCACTGCTGCCATTAGAACTCTTCGCTGGGAGATAAGGGGATTCCGGTCCAAGATT 960
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1057 CTCTTCACTGCTGCCATTAGAACACTTCGCTGGGAGATAAGGGGATTCCGGTCCAAGATT 1116
Query 961 TGTGGAAACGAATGTCTACTTTGCTGTGTTGATTTCCTGTTTCATCTAGTTGAAACTCTA 1020
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1117 TGTGGAAACGAATGTTTACTTTGCTGCGTTGATTTCCTGTTTCATCTAGTTGAAACACTA 1176
Query 1021 GTTCGGTTTTTTAACAAGTATGCATACGTCCAGATTGCGGTGTATGGAAAAGGATTTAAC 1080
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1177 GTTCGTTTTTTTAACAAGTATGCATACGTCCAGATTGCAGTGTATGGAAAAGGATTCAAC 1236
Query 1081 AAATCAGCAAGAGACGCGTGGGAATTGTTTCAGTCGACAGGTGTAGAGGCACTTGTTGCA 1140
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 AAATCAGCAAGAGACGCATGGGAATTGTTTCAGTCGACAGGTGTAGAGGCACTTGTTGCA 1296
Query 1141 TATGACTGCTCTGGTGCTGTACTTCTGATGGGAACCATCTTTGGAGGACTCATCACAGGC 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 TATGACTGCTCTGGTGCTGTACTTCTGATGGGAACCATCTTTGGAGGACTCATCACAGGC 1356
Query 1201 TCTTGCATTGGTATATGGGCTTGGATCAAGTACAGTGACCGAGTTATAATGGTTGCATCT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 TCTTGCATTGGTATATGGGCTTGGATCAAGTACAGTGACCGAGTTATAATGGTTGCATCT 1416
Query 1261 ACGGCTATGTTGATGGGAATGGTTCTTGTGGGTTTAGGAATGGTGGTAGTGGAGAGCGCA 1320
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1417 ACGGCTATGTTGATGGGAATGGTTCTTGTGGGTTTAGGAATGGTGGTAGTCGAAAGCGCT 1476
Query 1321 GTGACATCAATATACATATGTTTTGCTGAAGATCCTTTGTTGATTCAAAGATGGGATGCT 1380
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1477 GTGACATCGATATACATATGTTTTGCTGAAGATCCTTTGTTGATTCAGAGATGGGATGCT 1536
Query 1381 GATTTCTACACTGAGATGTCTGAGGTGCTTCATCGTCGTCTCCAACATCGTAGCTCTCGA 1440
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1537 GATTTCTACACTGAGATGTCTGAGGTGCTTCACCGTCGTCTCCAACATCGTAGCTCGCGA 1596
Query 1441 GCCCATGAAGTTTCGACTACCGCTTGA 1467
|||| |||||||| ||| |||||||||
Sbjct 1597 GCCCGTGAAGTTTTGACGACCGCTTGA 1623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72338985345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5