BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg313379 Length=1467 Score E Sequences producing significant alignments: (Bits) Value AT1G25500.2 | Symbols: | Plasma-membrane choline transporter f... 2466 0.0 > AT1G25500.2 | Symbols: | Plasma-membrane choline transporter family protein | chr1:8955308-8957949 REVERSE LENGTH=1752 Length=1752 Score = 2466 bits (1335), Expect = 0.0 Identities = 1423/1467 (97%), Gaps = 0/1467 (0%) Strand=Plus/Plus Query 1 ATGAGTGAATCCACTAACAGCGTCTCTCCTTCCTCTGATTACGCCTCCATCTCCTCCGGC 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 157 ATGAGTGACTCCACTAACAGCGTCTCTCCTTCCTCTGATTACGCCTCCATCTCCTCCGGC 216 Query 61 GACCAGAGTCTTCAGCGGAGTCGAAGGAGTGGAGATGGAAACCGAGCCATTGTCCGTGAG 120 |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 217 GACCAGAGTCTTCAGCGGAGTCGAAGGAGTGGAGATGGAAACCGAGCCGTTGTGCGTGAG 276 Query 121 TCTCGCCACTGGCATGATGTATTCTGGTCAGCCATCTTTGTGATCCACATGATTTGTTTG 180 || ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 277 TCCCGCCATTGGCATGATGTATTCTGGTCAGCCATCTTTGTGATCCACTTGATTTGTTTG 336 Query 181 GGATTTGTGCTCGCGGTGCTTGGACTCAATAGGTTTAGAATATCAGATAGGTTAAACATC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 337 GGATTTGTGCTCGCGGTGCTTGGACTCAATAGGTTTAGAATATCAGATAGGTTAAACATC 396 Query 241 GATAGGTACACTCAAGGGTTCTTGGAGAATCATAAAGGTCTGACTGAGGATTACTGGCCT 300 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 397 GATAGGTACACTCAAGGGTTCTTGGAGAATCATAAAGGTCTAACAGAGGATTACTGGCCT 456 Query 301 CTCTATGCTGTTGCTGGTGGGATTGGAGTCTTTATCAGTTGGGTTTGGTCATTGCTGCTT 360 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 457 CTCTATGCTGTTGCTGGTGGCATTGGAGTCTTTATCAGTTGGGTTTGGTCATTGCTGCTT 516 Query 361 GGCTCTTACGCCAATGAGATGATGAAAGTTTCGGTTCACATCTTAACAACTTATCTAGCT 420 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 517 GGCTCTTACGCCAATGAGATGATGAAAGTTTCGGTTCACATCTTAACAACCTATCTAGCT 576 Query 421 GTAGTTAGTGTACTATGTTTCTGGTGCAGACAGTTCTTCTGGGGCGGTGCATTCGCTGTT 480 ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 577 GTAGTTAGTGTACTATGTTTCTGGTGCAGACTGTTCTTTTGGGGCGGTGCATTCGCTGTT 636 Query 481 GGAGCTCTGTTGCAGTTCTTGTATGTTATTTCAGTTATAGACAGACTTCCCTTCACGATG 540 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 637 GGATCTCTGTTGCAGTTCTTGTATGTTATTTCAGTTATAGACAGACTTCCTTTCACAATG 696 Query 541 CTGGTTCTGCGGAAAGCGCTGAAATTAGTTTGGGGACTTCCTAAGGTGATAATGGTGGCA 600 ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 697 CTGGTCCTACGGAAAGCGCTGAAATTAGTCTGGGGACTTCCTAAGGTGATAATGGTGGCA 756 Query 601 CATGCTTTCACAGTAGTCATGCTTTTGTGGATGTCTCTATGGTCTTTTGGAGCAGCTGGT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 757 CATGCTTTCACAGTAGTCATGCTTTTGTGGATGTCTCTATGGTCTTTTGGAGCAGCTGGT 816 Query 661 GTTGTGGCATCGAGCATGGGTGATGAGGGACGATGGTGGCTTCTTCTGGTTCTTTCGGTT 720 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 817 GTTGTGGCATCGAGCATGGGCGATGAGGGACGATGGTGGCTTCTTGTGGTTCTTTCGGTT 876 Query 721 AGCTTATTCTGGACAGGCGCTGTGCTATGTAATACTGTCCATGTTATAGTTTCTGGGATG 780 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 877 AGCTTATTCTGGACAGGCGCTGTGCTATGTAACACTGTCCATGTTATAGTTTCTGGGATG 936 Query 781 GTGTTTCATGTTCTCTTTCACTGTGGTCAAGAAGAGTCATCATCGTTACCTCCTAGCTCT 840 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 937 GTGTTTCATGTTCTCTTTCACTGTGGTCAAGAAGAGTCATCATCGTTGCCTCCTAGCTCT 996 Query 841 TTAATAGACTCACTTAGGTATGCAGTGACAACATCTTTTGGGAGCATATGTTACGGGTCA 900 || ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 997 TTGGTAGACTCACTTAGGTATGCCGTGACAACATCTTTTGGGAGCATATGTTACGGTTCA 1056 Query 901 CTCTTCACTGCTGCCATTAGAACTCTTCGCTGGGAGATAAGGGGATTCCGGTCCAAGATT 960 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1057 CTCTTCACTGCTGCCATTAGAACACTTCGCTGGGAGATAAGGGGATTCCGGTCCAAGATT 1116 Query 961 TGTGGAAACGAATGTCTACTTTGCTGTGTTGATTTCCTGTTTCATCTAGTTGAAACTCTA 1020 ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1117 TGTGGAAACGAATGTTTACTTTGCTGCGTTGATTTCCTGTTTCATCTAGTTGAAACACTA 1176 Query 1021 GTTCGGTTTTTTAACAAGTATGCATACGTCCAGATTGCGGTGTATGGAAAAGGATTTAAC 1080 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 1177 GTTCGTTTTTTTAACAAGTATGCATACGTCCAGATTGCAGTGTATGGAAAAGGATTCAAC 1236 Query 1081 AAATCAGCAAGAGACGCGTGGGAATTGTTTCAGTCGACAGGTGTAGAGGCACTTGTTGCA 1140 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1237 AAATCAGCAAGAGACGCATGGGAATTGTTTCAGTCGACAGGTGTAGAGGCACTTGTTGCA 1296 Query 1141 TATGACTGCTCTGGTGCTGTACTTCTGATGGGAACCATCTTTGGAGGACTCATCACAGGC 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1297 TATGACTGCTCTGGTGCTGTACTTCTGATGGGAACCATCTTTGGAGGACTCATCACAGGC 1356 Query 1201 TCTTGCATTGGTATATGGGCTTGGATCAAGTACAGTGACCGAGTTATAATGGTTGCATCT 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1357 TCTTGCATTGGTATATGGGCTTGGATCAAGTACAGTGACCGAGTTATAATGGTTGCATCT 1416 Query 1261 ACGGCTATGTTGATGGGAATGGTTCTTGTGGGTTTAGGAATGGTGGTAGTGGAGAGCGCA 1320 |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1417 ACGGCTATGTTGATGGGAATGGTTCTTGTGGGTTTAGGAATGGTGGTAGTCGAAAGCGCT 1476 Query 1321 GTGACATCAATATACATATGTTTTGCTGAAGATCCTTTGTTGATTCAAAGATGGGATGCT 1380 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1477 GTGACATCGATATACATATGTTTTGCTGAAGATCCTTTGTTGATTCAGAGATGGGATGCT 1536 Query 1381 GATTTCTACACTGAGATGTCTGAGGTGCTTCATCGTCGTCTCCAACATCGTAGCTCTCGA 1440 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 1537 GATTTCTACACTGAGATGTCTGAGGTGCTTCACCGTCGTCTCCAACATCGTAGCTCGCGA 1596 Query 1441 GCCCATGAAGTTTCGACTACCGCTTGA 1467 |||| |||||||| ||| ||||||||| Sbjct 1597 GCCCGTGAAGTTTTGACGACCGCTTGA 1623 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72338985345 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5