BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313386
Length=288
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25425.1 | Symbols: CLE43 | CLAVATA3/ESR-RELATED 43 | chr1:8... 457 3e-128
> AT1G25425.1 | Symbols: CLE43 | CLAVATA3/ESR-RELATED 43 | chr1:8922700-8923331
FORWARD LENGTH=632
Length=632
Score = 457 bits (247), Expect = 3e-128
Identities = 277/291 (95%), Gaps = 3/291 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTGTCGAGATATTCTGTTGACTTTCTCCGTCGCTCTCTTACTCATCTCTCTCTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 ATGGGTTGTCGAGATATTCTGTTGACTTTCTCCGTCGCTCTCTTACTCATCTCTCTCTTC 192
Query 61 CAGATCTGGCTTTTTCGGGAAGGACGACAGGTTCCGGAACTATCGGACGACCAACTAGGA 120
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 193 CAGATCTGGCTTTTCCGGGAAGGACGACAAGTTCCGGAACTATCGGACGACCAACTAGGA 252
Query 121 AAAGACGGTAATACCCTCATGACCTCCAAGAACAAGAAG--GA-CGAAGATGTTCAACGA 177
|||||| | ||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 253 AAAGACAGAAATACCCTCATGACCTCCAAGAACAAGAACAAGAACGAGGATGTTCAACGG 312
Query 178 CTCTTCCAAAGGTATTTCAAGGGAAGATCGTTTGGTTTGAACAACACCAACCCTCGCTTT 237
||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||
Sbjct 313 CTCTTCCAAAGGTATTTCAAGGGAAGATCTTTTGGTTTAAACAACACCAACTCTCGCTTT 372
Query 238 GAAGATTCCAATAGAAGGATCCCTAGTTCCCCGGATCGCCTTCACAACTAG 288
|||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 373 GAAGATTCCAATAGAAGGATCCCTAGTTCCCCGGATCGCCTTCATAACTAG 423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13270685736
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5