BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313393
Length=2343
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25375.1 | Symbols: | Metallo-hydrolase/oxidoreductase supe... 2346 0.0
AT1G25370.1 | Symbols: | Protein of unknown function (DUF1639)... 920 0.0
AT3G31402.1 | Symbols: | General transcription factor 2-relate... 75.0 3e-12
> AT1G25375.1 | Symbols: | Metallo-hydrolase/oxidoreductase superfamily
protein | chr1:8900153-8903257 REVERSE LENGTH=1738
Length=1738
Score = 2346 bits (1270), Expect = 0.0
Identities = 1421/1495 (95%), Gaps = 6/1495 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAATCTGAAACTTGCTTTGATCATCAAGAACCCTAGAGACGACGTTGAGTTCCTG 60
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 38 ATGGGAAATCTGAAACTTGCTTTGATCATCAAGAGCCCTAGAGACGACGTTGAGTTCCTA 97
Query 61 CTCGAGAAGCAAAAACAGCCGGCGAAATTTGGAGATGAAGCTTATGATTCCTTTGTCGAT 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 98 CTCGAGAAGCAAAAACAGCCGGCGAAATTTGGAGATGAAGCTTACGATTCCTTTGTCGAT 157
Query 121 TCCGATCTCTGGGACTTACCGTCAACAGATTTACTGGCTTTGGAAGACGGAGTCAGGTCC 180
|||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||
Sbjct 158 TCCGATCTCTGGGACTTACCGTCAACAGATTTACAGGCTCTGGAAGACGGAGTGAGGTCC 217
Query 181 GGATTTAGTATCTCTATACTTGAATCATGTTCTGAGGAGGTTGATTTGATGAATTTCGAC 240
||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 218 GGATTTAGTATTTCTATACTTGACTCATGCTCGGAGGAGGTTGATTTGATGAATTTCGAC 277
Query 241 TTCGAATCCACACTGATTCTGCTGTTGGCGAATTTAGGGATTGGTATTAGCGATGTAGGA 300
|||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||
Sbjct 278 TTCGAATCCACACTGATTCTGCTGCTGGAGAATTTAGGGATTGATATTAGCGATGTAGGA 337
Query 301 GAGTGGAGATTTGTCAGGTCTGTAGAAGAGCCTGAGTTTGGACCTGACTCTTGCGTCCGT 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 338 GAGTGGAGATTCGTCAGGTCTGTAGAAGAGCCTGAGTTTGGACCTGACTCTTGTGTCCGT 397
Query 361 ACTTGTTTTATCTCCGGGAAGCTCTTGAATACAGATCAAAGTTTACAAGACAACTGTAAG 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 398 ACTTGTTTTATCTCCGGGAAGCTCTTAAATACAGATCAAAGTTTACAAGACAACTGTAAG 457
Query 421 TGGATGTCCATGGAAGCATGCTTTGACTCTCTTATAGATGTAAAACCGGGCTGTGATCGT 480
|||||||| |||||| ||||||| ||||||||||||||||||||| |||| |||||||
Sbjct 458 TGGATGTCAATGGAATCATGCTTCGACTCTCTTATAGATGTAAAATTGGGCAGTGATCGC 517
Query 481 GTTGGACCATTAGTACTACTTGGACTTGGGGATGGTTCATGTCAGTCCT-TGAAGCAGAA 539
|||||||||||||||||||||||||||||||||||||| |||||| || ||||||| ||
Sbjct 518 GTTGGACCATTAGTACTACTTGGACTTGGGGATGGTTCCCGTCAGT-CTATGAAGCATAA 576
Query 540 GTTGTCATCTTCTCTGTCTATCCAGGAATATCCACCTGGTGTTATGCTTGTGCCAATGCG 599
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 577 GTTGTCATCTTCTCTGGCTATCCAGGAATATCCACCTGGTGTTATGATTGTGCCGATGCA 636
Query 600 TAGCAGGACATTGAAACCTTTCAAGACAACAAATTTGGTTGTGTTTGCTCCAGAAAATGG 659
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 637 TAGCAAAACATTGAAACCTTTCAGGACAACAAATTTGGTTGTGTTTGCTCCAGAAAATGG 696
Query 660 TCCAGGGGATCATCAAGGGACTGATTTTGTAGCTCATGGGGATGCGTTGATAGTGGATCC 719
| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 697 TTTGGGGGACCATCAAGGGGCTGATTTTGTAGCTCATGGGGATGCGTTGATAGTGGATCC 756
Query 720 TGGATGTCTCTTC-AAACTCCACGTTGAGCTCAAGAAAATCGCTGATGCTTTACCTAGAA 778
|||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 757 TGGATGTCTC-TCTAAACTCCACGTTGAGCTCAAGAAAATCGTTGATGCTTTACCTAGAA 815
Query 779 AGCTAATTGTCTTTGTTACACATCACCATCGAGATCACATTGATGGTCTTTCTGCTATAC 838
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 816 AGCTAATTGTCTTTGTTACACATCACCATCGTGATCACATTGATGGTCTTTCTGCTATAC 875
Query 839 AAGAGAGCAATCCTGATGCTATTTTAGTGGCACATGTTAAAACTAGGCATCACATTGATG 898
||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| ||
Sbjct 876 AAGAGAGCAATCCTGATGCTATTCTAGTGGCACATGCTAAAACTAGGCATCGCATTGGTG 935
Query 899 GTTGGTCTGGTAACTATACCCCAGTTTCTGGAGGAGAAAACATCTATGTCAATGGTCATA 958
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 936 GTTGGTCTGGTAACTATACCCCAGTTTCTGGAGGAGAAAACATCTATGTCAACGGTCAAA 995
Query 959 AATTGACCGTCATTTTTGCTCCGGGGCACACAGATGGCCATATGGCACTACTTCATATCT 1018
|| |||||||||||||||||||||| ||||||||||| |||||| |||||||||||| ||
Sbjct 996 AACTGACCGTCATTTTTGCTCCGGGACACACAGATGGTCATATGTCACTACTTCATACCT 1055
Query 1019 CCACTCAATCTCTGATTGTTGGTGATCATTGTGTTGGTCAAGGAAGTGCTTTCTTGGACA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 CCACTCAATCTCTGATTGTTGGTGATCATTGTGTTGGTCAAGGAAGTGCTTTCTTGGACA 1115
Query 1079 TCAGGGGAGGTGGTAACATGACAGATTACTTTCAATCGACATATAAATTTCTGGAGCTTT 1138
|||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1116 TCAGGGCAGGTGGTAACATGACAGATTACTTTCAGTCGACATATAAATTCCTGGAGCTTT 1175
Query 1139 CTCCAAATGTGGTGATTCCCATGCATGGAAGGGTCAATTTGTGGCCGAAACACATGCTTT 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 CTCCAAATGTGGTGATTCCCATGCATGGAAGGGTCAATTTGTGGCCGAAACACATGCTTT 1235
Query 1199 GTGGATATCTCAAAAACCGCAGAAGCAGAGAAGAATCAATCCTAAAGGCCACTGAGGATG 1258
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1236 GTGGATATCTCAAAAACCGCAGAAGCAGAGAAAAATCAATCCTAAAGGCCACTGTGGATG 1295
Query 1259 GAGCTCAGACGTTATATGACATTGTTGCTAACGTGTACTCAAGTGTGGATCGCAGATTCT 1318
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1296 GAGCTCAGACGTTATATGACATTGTTGCTAAGGTGTACTCAAGTGTGGATCGCAAATTCT 1355
Query 1319 GGTGGGCTGCAGCATCAAACGTTAGGCTGCATATCGACAAGCTGGCTGTAGAAAACAAAT 1378
||||||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 1356 GGTGGGCTGCATCATCAAACGTAAGGCTGCATATCGAGAAGCTGGCAGTAGAAAACAAAT 1415
Query 1379 TACCAGAGGGATTCTCAATCCGAAAA-TTCAAAGCAAGTTGCGGAATGTGTTTTGCGATA 1437
||||||||||||||||||||| |||| |||||||||||||||||| | |||||||||||
Sbjct 1416 TACCAGAGGGATTCTCAATCC-AAAAGTTCAAAGCAAGTTGCGGATTACGTTTTGCGATA 1474
Query 1438 CGGTGGACAGTGGGTTATATCAGAAGCAAGATTCCGTTCAAGATCAATAAGCCAG 1492
||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1475 CGGTGTACAGTGGGTTATATCATTAGCAAGATTCCGTTCAAGATCAATAAGCCAG 1529
> AT1G25370.1 | Symbols: | Protein of unknown function (DUF1639)
| chr1:8897755-8899102 REVERSE LENGTH=1160
Length=1160
Score = 920 bits (498), Expect = 0.0
Identities = 739/844 (88%), Gaps = 62/844 (7%)
Strand=Plus/Plus
Query 1531 AGAGTAAGTGCACCAGAATCAATGGTATTTCCCGGTGAGATGGCGGCGACGACGACGACG 1590
|||||||||||| |||||||||||||||||||||||||||| | |||||||||| |||
Sbjct 148 AGAGTAAGTGCAACAGAATCAATGGTATTTCCCGGTGAGAT---GACGACGACGACAACG 204
Query 1591 AGACCTGAGCAACGATCGAAGACTCTTCACAATTTCCCTCTCCCGAACTTATGGGGGAAT 1650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 AGACCTGAGCAACGATCGAAGACTCTTCACAATTTCCCTCTCCCGAACTTATGGGGGAAT 264
Query 1651 CAGAGACATCTCAAGTGCATGAAGATCGACTCTATCAG------------CAAC---GGA 1695
|||||||| |||||||||| |||||||||||||||||| |||| |||
Sbjct 265 CAGAGACAACTCAAGTGCACGAAGATCGACTCTATCAGCAACAACAACAACAACGGAGGA 324
Query 1696 GGT-TC--CGGCGATCACCGACTACGACGCCGATCTCCGCCTTTGAAATTCGCTGATTCT 1752
||| | |||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 325 GGTCCCGGCGGCGATCACCGACTACGACGCCGATCTCCGCCTCTGGAATTCGCTGATTCT 384
Query 1753 TCCGTCTCGATCCCGTTTCGATTCGGAAACTCCGATCATCGTCGACCGTTTAAATCGGGA 1812
|||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 385 CCCGTTTCGATGCCGTTTCGATTCGGTAACTCCGATCATCGCCGACCGTTTAAATCGGGA 444
Query 1813 AGCGAAGAAGGGATCGAAGAGTTCAGGGTGAAGATTATGTCGGATCTGAAGACGGTGAGA 1872
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 445 AGCGAAGAAGGGATCGAAGAGTTCAGGGTGAAGCTTATGTCGGATCTGAAGACGGAGACA 504
Query 1873 GATAAGATCACACAATCGATGTTTAACAAAGACGTAATCGAAGAGGAAGAAGAAGAAGAT 1932
||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| || ||
Sbjct 505 GATAAGATCACACAATCGATGTTTAACAAAGGCGTAACCGAAGAGGAAGAGGAACAA-AT 563
Query 1933 --A---T-C-GA--C-GGTTCTGGTTCCGGTCAAGAGAAGGAGGT--TTC-TCCGGTGAA 1979
| | | | | ||||||||||||||||||||||||||| | ||| |||||||||
Sbjct 564 CGACGGTTCTGGTTCTGGTTCTGGTTCCGGTCAAGAGAAGGAGATGATTCCTCCGGTGAA 623
Query 1980 GCCATGGAATCTAAGGAAGAGAAGAGCAGC-G--TGTAAGGAACCGGAATCCAACAGTTT 2036
||| |||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||
Sbjct 624 GCCGTGGAATCTAAGGAAAAGAAGAGCAGCAGCGTGTAAAGAACCGGAATCCAACAGTTT 683
Query 2037 GAATCATCAAATCTATAAAGGATTTGTAATTGAGGAGAAGATAGTGAAGAATCATCCATC 2096
|| ||| | | | || ||| |||| |||||||||||| |||||||||||| | |||
Sbjct 684 GA-TCA--A--T--A-AA-GGAATTGTGATTGAGGAGAAGGTAGTGAAGAATC--C-ATC 731
Query 2097 TCCGGTGAGAGGCGGCGG---AGTGGTCGAAGCGGAGGCGACGAAGAAGATGCGAGTTAA 2153
|||||||||||||||||| |||||||||||||||| | |||| | | | | |
Sbjct 732 TCCGGTGAGAGGCGGCGGCGGAGTGGTCGAAGCGGAGA--A-GAAGC-G-TCCTA-T--- 782
Query 2154 GTTCTCTGTGAAGCTATCGAAGAAGGAGATCGAAGAAGATTTCATTGGGATGTTAGGTCA 2213
||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 783 GTTCTCTATGAAGCTATCGAAGAAGGAGATGGAAGAAGATTTCATTGGGATGGTAGGTCA 842
Query 2214 CCGACCACCGCGTCGGCCCAAGAAACGGCCCAGAACTGTTCAGAAAAAACTCGATAGTTT 2273
|||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 843 CCGAGCACCGCGTCGGCCCAAGAAACGGTCCAAAACTGTTCAGAAAAAACTCGATAGTTT 902
Query 2274 GTATCCTGGATTGTATTTGACTGAAGTGACGCATGATGCATATAAGGTTCCAGAAGAAAC 2333
|| ||| || |||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 903 GTTTCCAGGGTTGTATTTGACTGAAGTGACACATGATGCATATAAGGTTCCAGAATAAAC 962
Query 2334 CAAG 2337
||||
Sbjct 963 CAAG 966
> AT3G31402.1 | Symbols: | General transcription factor 2-related
zinc finger protein | chr3:12770931-12773539 REVERSE LENGTH=1182
Length=1182
Score = 75.0 bits (40), Expect = 3e-12
Identities = 57/64 (89%), Gaps = 5/64 (8%)
Strand=Plus/Plus
Query 1967 TTTCTCCGGTGAAGCCATGGAATCTAAGGAAGAGAAGAG---CAGCGTGTA-AGGAACCG 2022
||||||||||||||||||||||||||||||| ||||||| ||||||||| || ||| |
Sbjct 1113 TTTCTCCGGTGAAGCCATGGAATCTAAGGAAAAGAAGAGGAGCAGCGTGTATAGAAAC-G 1171
Query 2023 GAAT 2026
||||
Sbjct 1172 GAAT 1175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116314662765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5