BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313414
Length=588
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24735.2 | Symbols: | S-adenosyl-L-methionine-dependent met... 893 0.0
AT1G24733.1 | Symbols: | pseudogene of CCoAMT (caffeoyl-CoA 3-... 424 7e-118
> AT1G24735.2 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:8757864-8759645
FORWARD LENGTH=1186
Length=1186
Score = 893 bits (483), Expect = 0.0
Identities = 555/590 (94%), Gaps = 4/590 (1%)
Strand=Plus/Plus
Query 1 ATGATTTGTGTTTGTATGCGTAGAAGCGAGATGGAGGTACCGGTGGATGAGGGGCATTTC 60
||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 402 ATGGTTTGTGCTTGTATGCGTAGAAGCGAGATGGAGGTACCGGTTGATGAGGGGCATTTC 461
Query 61 CTATCGATGCTTATAAAGATAATGAATGCCAAAAAGACGATAGAGCTTGGTGTTTTCACC 120
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 CTATCTATGCTTCTAAAGATAATGAATGCCAAAAAGACGATAGAGCTTGGTGTTTTCACC 521
Query 121 GGTTATTCGTTACTCACAACTGCCCTTGCATTGCCTCATGATGGACATATTACTGCAATA 180
||||||||||| ||||| || ||||| ||||||||||||||||||||| |||||| ||||
Sbjct 522 GGTTATTCGTTGCTCACCACGGCCCTAGCATTGCCTCATGATGGACATGTTACTGGAATA 581
Query 181 GACATTGATAAAGAAGCTTACGAGGTGGGACTAGAGTTCATAAAAAATGCAGGTGTTGAT 240
|| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| ||
Sbjct 582 GATATTGATAAAGAAGCTTACGAGATGGGACTGGAGTTCATAAAGAATGCAGGTGTTCAT 641
Query 241 CATAAGATCAATTTCATCCAATCTGATTGTCTTCGGGCCTTAGACAAGATGTTGAGTGAG 300
|| ||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct 642 CACAAGATCAATTTCATCCACTCTGATTGTCTTCAGGCCTTAGACAATATGTTGAGTGAG 701
Query 301 AATCCAAAACCAGAGTTTGATTTCGCATTTGTTGATGCTGATAAACCAAACTATGCAAAC 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 702 AATCCAAAACCAGAGTTTGATTTCGCATTTGTTGACGCTGATAAACCAAACTATGCAAAC 761
Query 361 ATGCACGAGAGACTAATGAAGCTGGTGAAGGTAGGAGGAATCATAGCGTTTGATAACACA 420
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 762 ATGCACGAGAGGCTAATGAAGCTGGTGAAGGTAGGAGGAGTCATAGCGTTTGATAACACA 821
Query 421 TTGTGGTTC-GGGTTTGTGGCGGAGAAAGAGGAAAACGTGCCAGAGCACATGAGGATGAA 479
||||||| | |||||||||||||||||||||||||||||||||| |||||||||| | ||
Sbjct 822 TTGTGGT-CAGGGTTTGTGGCGGAGAAAGAGGAAAACGTGCCAGTGCACATGAGGGTAAA 880
Query 480 CAGAAAAGCCTTTTTGGACTTGAACAAGCAG-CTCGCTGCTGATCCTCGCATCGAGCTCT 538
||||||||||||||||||||||||||||| | |||||||||||||||| | ||||| |||
Sbjct 881 CAGAAAAGCCTTTTTGGACTTGAACAAGC-GTCTCGCTGCTGATCCTCACGTCGAGGTCT 939
Query 539 CTCAAGTCTCCATTGGTGATGGTGTCACTCTCTGTAGACGCCTTGTATGA 588
|||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 940 CTCAAGTCTCCATTGGCGATGGTGTCACTCTCTGCAGACGCCTTGTATGA 989
> AT1G24733.1 | Symbols: | pseudogene of CCoAMT (caffeoyl-CoA
3-O-methyltransferase) | chr1:8757069-8757362 FORWARD LENGTH=294
Length=294
Score = 424 bits (229), Expect = 7e-118
Identities = 274/295 (93%), Gaps = 5/295 (2%)
Strand=Plus/Plus
Query 298 GAGAATCCAAAACCAGAGTTTGATTTCGCATTTGTTGATGCTGATAAACCAAACTATGCA 357
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 GAGAATCCAAAACCAGAGTTTGATTTTGCATTTGTTGATGCTGATAAACCAAACTATGCC 60
Query 358 AACATGCACGAGAGACTAATGAAGCTGGTGAAGGTAGG-AGGA--A-TCATAGCGTTTGA 413
|||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct 61 AACATGCACGAGAGACTAATGAAGCTGGTGAAGGTAGGTAGGAGGAATCATAGCGTTTGA 120
Query 414 TAACACATTGTGGTTCGGGTTTGTGGCGGAGAAAGAGGAAAACGTGCCAGAGCACATGAG 473
|||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TAACACTTTGTGGTACGGGTTTGTGGCGGAGAAAGAGGAAA-CGTGCCAGAGCACATGAG 179
Query 474 GATGAACAGAAAAGCCTTTTTGGACTTGAACAAGCAGCTCGCTGCTGATCCTCGCATCGA 533
| |||||||||||| ||||||||| |||||||||| ||| |||||||||| |||||||||
Sbjct 180 GGTGAACAGAAAAGTCTTTTTGGAGTTGAACAAGCGGCTAGCTGCTGATCATCGCATCGA 239
Query 534 GCTCTCTCAAGTCTCCATTGGTGATGGTGTCACTCTCTGTAGACGCCTTGTATGA 588
| |||||| ||||||| | ||||||||||||||||| || |||||||||||||||
Sbjct 240 GGTCTCTCTAGTCTCCGTAGGTGATGGTGTCACTCTATGCAGACGCCTTGTATGA 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28281824761
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5