BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313416
Length=2685
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24650.1 | Symbols: | Leucine-rich repeat protein kinase fa... 3725 0.0
> AT1G24650.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr1:8734570-8737315 FORWARD LENGTH=2661
Length=2661
Score = 3725 bits (2017), Expect = 0.0
Identities = 2479/2696 (92%), Gaps = 55/2696 (2%)
Strand=Plus/Plus
Query 7 ATCGCAAAAAGCTTCCTCCTTTTGCTCTGTTTCATCGCCTTGGTGAACGGGGAATCGAGC 66
|||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 4 ATCGCAAAAAACTTCCTCCTTTTGCTCTGTTTCATTGCCTTGGTGAACGTTGAATCGAGC 63
Query 67 CCTGATGAGGCGGTCATCATGATAGCTCTGAGAGACTCCCTGAACCTAACTGGAAGTCTC 126
||||||||||||| ||||||||||||||||||||||| |||| ||| |||||| || |
Sbjct 64 CCTGATGAGGCGG---TCATGATAGCTCTGAGAGACTCCTTGAAGCTATCTGGAAATC-C 119
Query 127 -AACTGGTCCGGTTCGGATCCTTGTAAGTGGTC---GCTT-GTACAATGCGACGACACAA 181
||||||||||| |||||||||||||||||||| | || || ||||||||| |||
Sbjct 120 AAACTGGTCCGGGTCGGATCCTTGTAAGTGGTCTATG-TTCATAAAATGCGACG---CAA 175
Query 182 GCAATAGGGTCACCGCGATCCAAATCGGGGGCAAAGGAATCTCAGGAACGCTACCTCCTG 241
||||| |||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 176 GCAATCGGGTCACCGCGATCCAAATCGGGGACAGAGGAATCTCAGGAAAGCTACCTCCTG 235
Query 242 ATCTCGGAAATCTAACATCTTTGACTAAGTTCGAGGTCATGAGGAACCATTTAACAGGGC 301
|||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| |
Sbjct 236 ATCTCGGAAAGCTAACATCTTTGACGAAGTTCGAGGTCATGAGGAACCGTTTAACAGGAC 295
Query 302 CAATCCCGAGTCTTGCTGGGTTGAAATCGTTGGTAACGGTGTATGCTAATGACAATGATT 361
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 296 CAATACCGAGTCTTGCTGGGTTGAAATCGTTGGTAACTGTGTATGCTAATGACAATGATT 355
Query 362 TCACTTCTGTCCCTGTGGATTTCTTCACTGGTTTGAGTTCTCTTCAGTC-TGTGTCTCTG 420
||||||||||||||| |||||||||| |||||||||||||||||||| | ||| ||||||
Sbjct 356 TCACTTCTGTCCCTGAGGATTTCTTCTCTGGTTTGAGTTCTCTTCAG-CATGTTTCTCTG 414
Query 421 GATAACAATCCTTTTGTTTCTTGGAAAATCCCTCCGAGTTTGGAAGACGCGACTGCTCTA 480
|||||||||||||||| ||||||| || ||||||||||||||| |||||||| | ||
Sbjct 415 GATAACAATCCTTTTGATTCTTGGGTGATACCTCCGAGTTTGGAAAACGCGACTTCCCTT 474
Query 481 GCAGATTTCTCCGCTGTCAACTGCAATCTTTCAGGGGAA-ATCCCGGGTT-T-TC-TCG- 535
| ||||||||| |||||||||||||||||||| ||||| ||||||| || | || |||
Sbjct 475 GTAGATTTCTCTGCTGTCAACTGCAATCTTTC-CGGGAAGATCCCGGATTATCTCTTCGA 533
Query 536 GTGGAAAAAATTTCTCTAGTTTGACGACTCTGAAACTTTCTTATAATTCGCTTGTAGGTG 595
| || ||| |||||||||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct 534 G-GGGAAAGATTTCTCTAGTTTGACGACTCTGAAACTGTCTTATAACTCGCTTGTATGTG 592
Query 596 AACTTCCGATGAATTTCTCCGAATCACGTGTTGAAATTCTGATGCTTAACGGGCAAAAGG 655
|| |||| |||||||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct 593 AATTTCCCATGAATTTCTCCGACTCACGTGTTCAAGTTCTGATGCTTAACGGGCAAAAGG 652
Query 656 G-AGCGGAGAAGCTCCATGGGTCAATTTCGGTTCTGCAAAACATGACTGCTTTAACCAAT 714
| || ||||||||| ||||||||||||||| |||||||||| |||||| |||| ||||||
Sbjct 653 GAAG-GGAGAAGCTTCATGGGTCAATTTCGTTTCTGCAAAAGATGACTTCTTTGACCAAT 711
Query 715 GTTACGCTGCAAGGGAACAGCTTCTCGGGTCCTTTACCAAACTGTTCTCGTCTAGTCTCG 774
|||||||||||||||||||||||||| |||||||||||| ||| |||| || ||||||||
Sbjct 712 GTTACGCTGCAAGGGAACAGCTTCTCCGGTCCTTTACCAGACTTTTCTGGTTTAGTCTCG 771
Query 775 CTGAAAAGTTTTAATGTTAGGGAGAATCAGCTTACGGGCCTTGTTCCCCCCTCTTTGTTT 834
|||||||||| ||||||||||||||||||||| |||| || |||||| | |||||||||
Sbjct 772 TTGAAAAGTTTCAATGTTAGGGAGAATCAGCTTTCGGGTCTCGTTCCCTCTTCTTTGTTT 831
Query 835 GAGCTTCAATCTCTTTCTGATGTGGCTTTAGGCAATAACTTGCTCCAAGGACCAACTCCA 894
||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 832 GAGCTGCAATCTCTTTCTGATGTTGCTTTAGGTAATAACTTGCTTCAAGGACCAACTCCA 891
Query 895 AACTTCACGGCTCCCAACATTAAGCCTGATATGACTGGGCTCAATAGTTTCTGCTTAGAT 954
|||||||||||||| |||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct 892 AACTTCACGGCTCCTGACATTAAGCCTGATCTGAATGGTCTCAATAGTTTCTGCTTAGAT 951
Query 955 ACCCCAGGTACTCCTTGTGATCCCCGTGTCAACACGTTGCTTTCAATCGTTGAAGCCTTT 1014
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 ACTCCAGGTACTTCTTGTGATCCCCGTGTCAACACGTTGCTTTCAATCGTTGAAGCCTTT 1011
Query 1015 GGTTACCCGGTGAATTTTGCGGAGAAATGGAAAGGAAATGATCCTTGTAATAGATGGGTA 1074
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1012 GGTTACCCGGTGAATTTTGCGGAGAAATGGAAAGGAAATGATCCTTGTAGTGGATGGGTA 1071
Query 1075 GGGATCACTTGTACTGGAACTGATATCACTGTTATTAACTTCAAAAACTTGGGGCTCAAC 1134
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1072 GGGATCACTTGTACTGGAACTGATATCACAGTTATCAACTTCAAAAACTTGGGGCTCAAC 1131
Query 1135 GGCACTATCTCTCCACTG-TTTGCTGATCTTGCGTCTCTTCAG-GTTATTAATCTCTCTC 1192
|||||||| ||||||| | ||||||||| |||||||||||| | ||||||||||||||||
Sbjct 1132 GGCACTATATCTCCAC-GATTTGCTGATTTTGCGTCTCTTC-GTGTTATTAATCTCTCTC 1189
Query 1193 AGAATAATCTTAGTGGTACTATTCCACAAGAGCTCACTAAGTTGAGTAACTTGAAAACTC 1252
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1190 AGAATAATCTTAATGGTACTATTCCACAAGAGCTCGCTAAGTTGAGTAACTTGAAAACAC 1249
Query 1253 TAGATGTTTCGAATAATCGGTTGTGTGGTGAAGTACC-GGTTTCTAACACAACTATTTTT 1311
| ||||||||||| ||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct 1250 TGGATGTTTCGAAGAATCGGTTGTGTGGTGAAGTACCTCGTTT-TAACACAACTA---TT 1305
Query 1312 GTTGTAATCACGAGTGGGAATTCCGATATAAATAAGGAATGTCCTAAATCTTCCGGGGAT 1371
| | ||| ||||| |||||| | | | | |||| |||||| || | || ||
Sbjct 1306 G-T-TAA-CACGACTGGGAA-T----T-T---TGAGGACTGTCCT-AA---T--GGCAAT 1347
Query 1372 GGTGGCAAGAAAGCATCTCGCAATGCTGGGAAAATTGTTGGTTCTGTTATTGGCATTTTG 1431
| ||| |||||||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 1348 GCTGGAAAGAAAGCATCTAGTAATGCTGGGAAAATTGTTGGTTCTGTTATTGGTATTTTG 1407
Query 1432 TTAGCTTTGCTTCTCATCGGATTTGCTATCTTCTTGTTGGTCAAGAAAAAGAAGCAATAT 1491
|||||||||||||| || || ||||||| ||||| |||||||||||||||| |||||||
Sbjct 1408 TTAGCTTTGCTTCTTATAGGGGTTGCTATTTTCTTTTTGGTCAAGAAAAAGATGCAATAT 1467
Query 1492 CATAAGATGCATCCTCAACAACAATCTAGTGACCAAGATGCATTCAAGATTACAATTGAG 1551
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1468 CATAAGATGCATCCTCAACAACAATCTAGTGACCAAGATGCGTTCAAGATTACAATTGAG 1527
Query 1552 AATCTGTGTACTGGTGGTAGTGAAAGTGGATTCAGTGGTAATGACGCTCATCTAGGAGAA 1611
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 AATCTGTGTACTGGTGTTAGTGAAAGTGGATTCAGTGGTAATGACGCTCATCTAGGAGAA 1587
Query 1612 GCTGGGAATATTGTGATCTCAATACAAGTTTTGAGAGATGCTACAGATAATTTCGACGAG 1671
||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| |||
Sbjct 1588 GCTGGAAATATTGTGATCTCAATACAAGTTTTGAGGGATGCTACATATAATTTCGATGAG 1647
Query 1672 AAGAATATACTTGGCAGAGGAGGATTTGGAATAGTTTACAAGGGAGAGTTGCATGATGGA 1731
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 AAGAATATACTTGGGAGAGGAGGATTTGGAATAGTTTACAAGGGAGAGTTGCATGATGGA 1707
Query 1732 ACAAAGATTGCGGTTAAGAGAATGGAGTCTTCGATTATAAGTGGAAAGGGTTTAGATGAA 1791
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1708 ACAAAGATTGCGGTTAAGAGAATGGAATCTTCGATTATAAGTGGAAAGGGTTTAGATGAG 1767
Query 1792 TTTAAATCAGAGATTGCTGTTCTTACTAGAGTTCGACACCGTAACCTAGTGGTTCTTCAT 1851
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 1768 TTTAAATCAGAGATTGCTGTTCTTACTAGAGTTCGCCACCGAAATCTAGTGGTTCTTCAT 1827
Query 1852 GGTTATTGTTTAGAAGGCAATGAGAGGCTTCTGGTTTATCAGTACATGCCACAAGGGACA 1911
|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1828 GGTTATTGCTTAGAAGGCAATGAGAGACTTCTTGTTTATCAGTACATGCCACAAGGGACA 1887
Query 1912 TTAAGTAGGCATATGTTTC-ATTGGCAGGAAGAAGGTTTGAAGCCACTCGAGTGGACTAG 1970
|||||||||||||| |||| ||||| |||||||||| |||| ||| ||||||||||||||
Sbjct 1888 TTAAGTAGGCATAT-TTTCTATTGGAAGGAAGAAGGGTTGAGGCCTCTCGAGTGGACTAG 1946
Query 1971 ACGGTTGAGTATCGCATTGGATGTGGCTAGAGGAGTGGAGTATTTACATACTTTAGCGCA 2030
|||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 1947 ACGGTTGATTATTGCATTGGATGTGGCTAGAGGAGTTGAGTATTTGCATACTTTAGCACA 2006
Query 2031 TCAAAGTTTCATACACAGAGATCTCAAACCTTCTAATATTCTTCTTGGAGACGATATGCA 2090
|||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 2007 TCAAAGTTTCATACACAGAGATCTTAAACCTTCTAATATTCTTCTTGGAGATGACATGCA 2066
Query 2091 TGCTAAAGTTGCTGATTTTGGTTTAGTCCGGCTTGCGCCAGAAGGTACACAATCAATTGA 2150
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2067 TGCTAAAGTTGCTGATTTTGGTTTAGTCCGGCTTGCACCAGAAGGTACACAATCAATTGA 2126
Query 2151 GACCAAAATTGCTGGAACATTTGGTTATCTTGCACCAGAATATGCAGTGACCGGAAGAGT 2210
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2127 GACCAAGATTGCTGGAACATTTGGTTATCTTGCACCAGAGTATGCAGTGACCGGAAGAGT 2186
Query 2211 TACAACAAAGGTTGATGTTTACAGCTTCGGAGTTATCCTCATGGAGCTACTAACGGGTCG 2270
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2187 TACAACAAAGGTTGATGTTTACAGCTTTGGAGTCATCCTCATGGAGCTACTAACGGGTCG 2246
Query 2271 AAAAGCTCTTGATGCCACGCGATCTGAGGAAGAGGTACACCTTGCCACATGGTTTAGGAG 2330
|||||||||||||| | |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2247 AAAAGCTCTTGATGTTGCACGATCTGAGGAAGAAGTACATCTTGCCACATGGTTTAGGAG 2306
Query 2331 AATGTTTATCAACAAAGACTCGTTTCCAAAGGCGATCGATC-AAACAATTGAGGTCAACG 2389
||||||||||||||||| ||| || ||||||||||| || | || |||| ||||||||||
Sbjct 2307 AATGTTTATCAACAAAGGCTCATTCCCAAAGGCGATAGA-CGAAGCAATGGAGGTCAACG 2365
Query 2390 AAGAGACACTTGGAAGCATCAACATAGTAGCTGAGCTTGCCAATCAATGTAGCTCCAGGG 2449
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2366 AAGAGACACTCAGAAGCATCAACATAGTAGCTGAGCTTGCCAATCAATGTAGCTCCAGGG 2425
Query 2450 AACCGCGAGATAGACCCGACATGAATCACGTGGTCAACGTGTTGGTCTCACTTGTTGTAC 2509
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2426 AACCGCGAGATAGACCCGACATGAATCACGTTGTCAACGTGTTGGTCTCACTTGTTGTAC 2485
Query 2510 AATGGAAACCGACAGAGCGAAGCAGTGACTCCGACGATATCTATGGAATCGATTACGATA 2569
|||||||||| ||||| |||||||||||||| || |||||||||||||| |||||||| |
Sbjct 2486 AATGGAAACCCACAGAACGAAGCAGTGACTCGGAAGATATCTATGGAATTGATTACGACA 2545
Query 2570 CTCCTCTTCCTCAACTTATTCTTGATTCGTCTTATTTTGGAGATAATACTCTGATGAGCA 2629
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 2546 CTCCTCTTCCTCAACTTATTCTTGATTCGTGTTTTTTTGGAGATAATACTCTGACGAGCA 2605
Query 2630 TACCGTCGCGACCTTCGGAGCTTGAAAGCACATTCAAATCAGGACAAGGGAGGTAA 2685
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2606 TACCTTCGCGACCTTCCGAGCTTGAAAGCACATTCAAATCAGGACAAGGGAGGTAA 2661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133343734494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5