BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313424
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24570.1 | Symbols: | Protein of unknown function (DUF707) ... 1707 0.0
AT1G67850.1 | Symbols: | Protein of unknown function (DUF707) ... 715 0.0
> AT1G24570.1 | Symbols: | Protein of unknown function (DUF707)
| chr1:8707197-8709589 FORWARD LENGTH=1244
Length=1244
Score = 1707 bits (924), Expect = 0.0
Identities = 1038/1094 (95%), Gaps = 4/1094 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCTTCTTACAACAGCATTGTTTGCTATAGCTTTTGGCATTCTTGTTGGACTATCT 60
||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 55 ATGAAGCTTTTTACAACAGCATTGTTTGCTATAGCTTTTGGCATTGTTATTGGACTATCT 114
Query 61 TTTCCATCTTTATGGATCACTGAGACGAGTCTCCCCAGAAACCTTCTTCGCTCCATTGCT 120
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 115 TTTCCATCTTTATGGATCACTGAGACAAGTCTCCCGAGAAACCTTCTTCGCTCCATTGCT 174
Query 121 ATCTCACTTAGAGATTCAGGAATTGCAACTCCTCCCAAGGCCATTGATATCTCAAAGGCA 180
||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||
Sbjct 175 ATCTCACTTAGAGATTCCGGAATTGCAACTCCTCACAAAGCCATTGATATCTCAAAGGCA 234
Query 181 TGCGCTGAGAGATTACCACCCGGTATTATTGCATCCGAATCGGACTTGTATTTGCGCAGA 240
|||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||
Sbjct 235 TGCGCTGAGAGATTACCATCCGGTATCATTGCATCCGAATCGGACTTGTACTTGCGCAGA 294
Query 241 TTATGGGGGAACCCTGATGAGGATTTGA-AGAAGCAACCGAGATATCTAGCAACATTTAC 299
|||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 295 TTATGGGGGAACCCTGATGAGGATTT-AGTGAAACAACCGAGATATCTAGCAACATTTAC 353
Query 300 AGTGGGTTATAATCAGAGACACAATATAGATGCTTGTGTTAACAAGTTTTCAGACAACTT 359
||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||
Sbjct 354 AGTGGGTTATAATCAGAGACACAATATAGATGCGTGTGTTAGCAAGTTTTCAGAGAACTT 413
Query 360 TACAATTGTTCTGTTTCATTACGATGG-GATAACAAGTGCGTGGAACGATGAGTTTGAGT 418
||| ||||||||||||||||| ||||| | |||||||||| ||||| |||||||||||||
Sbjct 414 TACTATTGTTCTGTTTCATTATGATGGCG-TAACAAGTGCATGGAATGATGAGTTTGAGT 472
Query 419 GGTCGAAGAATGCAATACACATAAGTGTCAAAAAGCAGACAAAATGGTGGTATGCAAAGA 478
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 GGTCGAGGAATGCAATACACATAAGTGTCAAAAAGCAGACAAAATGGTGGTATGCAAAGA 532
Query 479 GATTCTTGCATCCGGACATTGTAGCACGATACGATTATATATTCATATGGGATGAAGATC 538
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 533 GATTCTTGCACCCGGACATTGTAGCACGATACGATTATATATTCATATGGGATGAGGATC 592
Query 539 TTGGAGTCGATCACTTTAACGCAGAAGAATACATACACATGGTGAAGAAGCACGGCCTTG 598
||||||| ||||||||||| |||||||||||||||||||| ||||||||||||| |||||
Sbjct 593 TTGGAGTTGATCACTTTAATGCAGAAGAATACATACACATAGTGAAGAAGCACGACCTTG 652
Query 599 AGATTTCGCAGCCTGGTTTGGACCCAGAGAGAGGGTTTAACTGGCAGATCACCAAAAGAA 658
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 653 AGATTTCGCAGCCTGGTTTGGACCCAGAGACTGGGTTTAATTGGCAGATCACCAAAAGAA 712
Query 659 GAGAACATAGTGAAGTCCATAAGGAAACAGATGAAAAACTCGACTGGTGCTCTCATCCTC 718
||||||||||||||||||| ||||| |||||||| |||||||||||||||||| ||||||
Sbjct 713 GAGAACATAGTGAAGTCCACAAGGAGACAGATGAGAAACTCGACTGGTGCTCTAATCCTC 772
Query 719 CTCGGCCTCCATGTGCTGCATTCGTGGAGATAATGGCTCCTGTATTCTCAAGAGATGCGT 778
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 773 CCCGGCCTCCATGTGCTGCATTCGTGGAGATAATGGCTCCTGTATTCTCAAGAGATGCAT 832
Query 779 GGCGCTGCGTCTGGCACATGATCCAGAATGATTTGGTTCACGGTTGGGGCCTTGACTTTG 838
|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 833 GGCGCTGCGTGTGGCATATGATCCAGAATGATTTGGTTCACGGTTGGGGTCTTGACTTTG 892
Query 839 CACTCAGAAGATGTGTTGAGGAGCCTGCATTTGAGAATATAGGAATAGTAGACTCACAGT 898
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 893 CACTGAGAAGATGTGTTGAGGAGCCTGCATTTGAGAAGATAGGAATAGTAGACTCACAGT 952
Query 899 GGATCGTTCATCAATTTATCCCTTCCCTTGGCAACCAGGGAAAAGAAGATAATGGGAAAG 958
|||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||
Sbjct 953 GGATCGTTCATCAATTTATCCCTTCCCTTGGCAACCAGGGGAAAGCAGATAACGGGAAAG 1012
Query 959 CGCCATGGCAAGGGGTGAGGGATAGATGTCAAATGGAATGGAAAATGTTCGAGAACAGAG 1018
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CACCATGGCAAGGGGTGAGGGATAGATGTCAAATGGAATGGAAAATGTTCGAGAACAGAG 1072
Query 1019 TAGATGCCGCGGAAAAGGATTATTTCAAATCATTACAAGTCGAAAGCCCATCCAATTCAA 1078
| || |||||||||||||||||||||| ||| |||||||| |||||||||||||||||||
Sbjct 1073 TGGAAGCCGCGGAAAAGGATTATTTCAGATCGTTACAAGTTGAAAGCCCATCCAATTCAA 1132
Query 1079 CAACCTCTCAATAG 1092
|||| ||||| |||
Sbjct 1133 CAACTTCTCATTAG 1146
> AT1G67850.1 | Symbols: | Protein of unknown function (DUF707)
| chr1:25437900-25442142 FORWARD LENGTH=1933
Length=1933
Score = 715 bits (387), Expect = 0.0
Identities = 740/905 (82%), Gaps = 46/905 (5%)
Strand=Plus/Plus
Query 196 CCACCCGGTATTATTGCAT-CCGAATCGGACTTGTATTTGCGCAGATTATGGGG-GAACC 253
||||| ||||| |||| | | ||||| ||||| |||||||||||||||||||| | |
Sbjct 802 CCACCGGGTATGGTTGC-TGCTGAATCAGACTTCTATTTGCGCAGATTATGGGGTTTA-C 859
Query 254 CTG-ATGAGGATTTGAAGAAG-CAACCGAGATATCTAGCAACATTTACAGTGGGTTA-TA 310
| | ||||||||||||| ||| |||| ||||| || ||||||||||||||||| || ||
Sbjct 860 C-GCATGAGGATTTGAA-AAGTGAACCAAGATACCTCGCAACATTTACAGTGGG-TATTA 916
Query 311 ATCAGAGA-CACAATATAGATGCTTGTGTTAACAAGTTTTCAGACAACTTTACAATTGTT 369
|||||| | || ||||| ||||||||||| || ||||||||||| ||||| || |||||
Sbjct 917 ATCAGAAAGCA-AATATCGATGCTTGTGTCAAGAAGTTTTCAGAAAACTTCACTATTGTC 975
Query 370 CTGTTTCA-T-T-AC-GATGGGATAACAAGTGCGTGGAACGATGAGTTTGAGTGGTCGAA 425
|||||||| | | || | ||| |||| || |||| ||||||||||| ||||| ||
Sbjct 976 CTGTTTCACTATGACGGCCGGG-TAAC---TGAGTGG---GATGAGTTTGAATGGTCAAA 1028
Query 426 GAATGCAATACACATAAGTGTCA-AAAAGCAGACAAAATGGTGGTATGCAAAGAGATTCT 484
|| ||| |||||||| || || | |||||||||||||||||||||||||||||| || |
Sbjct 1029 GACTGCTATACACATTAGCGT-ACGAAAGCAGACAAAATGGTGGTATGCAAAGAGGTTTT 1087
Query 485 TGCATCCGGACATTGTAGCACGATACGATTATATATTCATATGGGATGAAGATCTTGGAG 544
|||| || || ||||||||| |||| |||||||| ||| | ||||||||||| || || |
Sbjct 1088 TGCACCCTGATATTGTAGCAAGATATGATTATATCTTCGTCTGGGATGAAGACCTGGGTG 1147
Query 545 TCGATCACTTTAACGCAGAAGAATACATACACATGGTGAAGAAGCACGGCCTTGAGATTT 604
|||| || |||||||||||||| ||| || | |||||||||||||||||||| |||||||
Sbjct 1148 TCGAGCATTTTAACGCAGAAGAGTACGTAAAGATGGTGAAGAAGCACGGCCTGGAGATTT 1207
Query 605 CGCAGCCTGGTTTGGACCCAGAGAGAGGGTTTAAC-TGGCAGATCACCAAA-AGAAGAGA 662
| || ||||| ||||| ||| | |||| |||| ||||| || || ||| ||| |||
Sbjct 1208 CCCAACCTGGCTTGGAACCAAACC-AGGGACTAACGTGGCAAATGAC-AAAGAGACGAGG 1265
Query 663 ACATAGTG-AAGTCCATAAGGA-AACAGATGAAAAAC-TCGACTGGTGCTCTCATCCTCC 719
| ||| || |||| || ||| | |||||| |||| || | || |||||||| ||||||
Sbjct 1266 AGATA-TGGAAGTTCACAAG-ATAACAGAAGAAAGACCTGGA-TGGTGCTCAGATCCTCA 1322
Query 720 TCGGCCTCCATGTGCTGCATTCGTGGAGATAATGGCTCCTGTATTCTCAAGAGATGCGTG 779
|| |||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||
Sbjct 1323 TCTCCCTCCATGTGCTGCATTCGTAGAGATCATGGCTCCTGTATTTTCAAGAAATGCCTG 1382
Query 780 GCGCTGCGTCTGGCACATGATCCAGAATGATTTGGTTCACGGTTGGGGCCTTGACTTTGC 839
||| ||||| ||||| ||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1383 GCGATGCGTGTGGCATGTGATCCAGAATGATTTGGTACACGGTTGGGGTCTTGACTTTGC 1442
Query 840 ACTCAGAAGATGTGTTGAGGAGCCTGCATTTGAGAATATAGGAATAGTAGACTCACAGTG 899
||||||||||||||||||| |||||| |||||| |||||| |||| || || || ||
Sbjct 1443 ACTCAGAAGATGTGTTGAG---CCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATG 1499
Query 900 GATCGTTCATCAAT-TTATCCCTTCCCTTGGCAACCAGGGAAAAGAAGATA-ATGGGAAA 957
| |||||||||||| || ||| ||||||||||||||| || | | || | | ||||||
Sbjct 1500 GGTCGTTCATCAATCTTTTCC-TTCCCTTGGCAACCAAGGTGAGGC-GACAGACGGGAAA 1557
Query 958 GCGCCATGGCAAGGGGTGAGGGATAGATGTCAAAT-GGAATGGAAAATGTTCGAGAACAG 1016
|| |||||||||||||||||||||||||| |||| |||||||| ||||||| ||| ||
Sbjct 1558 GCACCATGGCAAGGGGTGAGGGATAGATG-CAAAAAGGAATGGACAATGTTCCAGAGTAG 1616
Query 1017 AGTAGATGCCGCGGAAAAGGATTATTTCAAATCATTACAAGTCGAAAGC-CCATCCAATT 1075
| | | | ||| || ||||||||||||||||| |||||||| ||| || || || ||||
Sbjct 1617 AATGGCTAACGCAGAGAAGGATTATTTCAAATCCTTACAAGTAGAAGGCTCC-TCAAATT 1675
Query 1076 CAACA 1080
|||||
Sbjct 1676 CAACA 1680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5