BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg313461 Length=492 Score E Sequences producing significant alignments: (Bits) Value AT1G27380.2 | Symbols: RIC2 | ROP-interactive CRIB motif-contai... 619 6e-177 > AT1G27380.2 | Symbols: RIC2 | ROP-interactive CRIB motif-containing protein 2 | chr1:9508745-9510066 REVERSE LENGTH=639 Length=639 Score = 619 bits (335), Expect = 6e-177 Identities = 431/476 (91%), Gaps = 11/476 (2%) Strand=Plus/Plus Query 13 TTGATATTGCCGTTTTCGTTAGGGTGTTCTACGCAATCTTGCGTCGCTGTGGCCACTACT 72 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2 TTGATATTGCCTTTTTCGTTAGGGTGTTCAACGCAATCTTGCGTCGCTGTGGCCACTACT 61 Query 73 CATCAACACAAGAAACCAAACCAACTCATCAAGAGAAGAGAGGAAGGTGATGAGAATGGC 132 |||||||| |||||||||||||||||||||||||||||||| ||| || |||||||||| Sbjct 62 CATCAACAAAAGAAACCAAACCAACTCATCAAGAGAAGAGAAGAAAGTCATGAGAATGGA 121 Query 133 TCATTTAAAAAAGAATACACAAAGATGGACA-ATAGCAGTGCAAATATCTCAGATGGAAG 191 |||||| |||||||||||||||||||||||| | | | |||| ||||| | ||||||||| Sbjct 122 TCATTTGAAAAAGAATACACAAAGATGGACAGAAA-CGGTGCTAATATGTTAGATGGAAG 180 Query 192 AGTAGAAAGTGATGAAAATGGCTCATTTAAAAAAGACTACACAAAGATGGacaacaacaa 251 |||||||||||||| ||| |||||||||| ||| || |||||||||||||| |||||||| Sbjct 181 AGTAGAAAGTGATGCAAAGGGCTCATTTAGAAAGGATTACACAAAGATGGAGAACAACAA 240 Query 252 caacaacaaTGGTGCTAATATCTCAGATGGTATCTACAGAATTATACGAAGCTTCAAGAG 311 |||| ||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 241 CAAC------GGTGCTAATATCTCAGATGGTATCTACAGAATTATTCGCAGCTTCAAGAG 294 Query 312 TTTCTCTCACTTTTTCATTCGTTACGAAGAGGAAACGAAAGAGAGAGAGGCGGAGATTGA 371 |||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||| || Sbjct 295 TTTCTCGCACTTTTTCATACGTTACGAAGAGGAGACGAAAGAGAGAGAAGCGGAGATGGA 354 Query 372 GATAGGATATCCGACGGAGGTGAAGCACTTGAGCCACATCGGAGTTGATGGAACGATGAC 431 |||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 355 GATAGGATTTCCAACGGACGTGAAGCACTTGAGCCACATCGGAGTTGATGGAACCATGAC 414 Query 432 CACTTTTGACAAGTCCTCCTCATCTTTTCCATTCGCCGGCTTTC-ATCTCAC-GGC 485 |||||| ||||| |||||||||||||||||||| |||| |||| ||||||| ||| Sbjct 415 CACTTTCGACAACACCTCCTCATCTTTTCCATTCTCCGG-TTTCCATCTCACCGGC 469 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23459346649 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5