BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg313461

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G27380.2 | Symbols: RIC2 | ROP-interactive CRIB motif-contai...   619    6e-177


> AT1G27380.2 | Symbols: RIC2 | ROP-interactive CRIB motif-containing 
protein 2 | chr1:9508745-9510066 REVERSE LENGTH=639
Length=639

 Score =  619 bits (335),  Expect = 6e-177
 Identities = 431/476 (91%), Gaps = 11/476 (2%)
 Strand=Plus/Plus

Query  13   TTGATATTGCCGTTTTCGTTAGGGTGTTCTACGCAATCTTGCGTCGCTGTGGCCACTACT  72
            ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  2    TTGATATTGCCTTTTTCGTTAGGGTGTTCAACGCAATCTTGCGTCGCTGTGGCCACTACT  61

Query  73   CATCAACACAAGAAACCAAACCAACTCATCAAGAGAAGAGAGGAAGGTGATGAGAATGGC  132
            |||||||| |||||||||||||||||||||||||||||||| ||| || |||||||||| 
Sbjct  62   CATCAACAAAAGAAACCAAACCAACTCATCAAGAGAAGAGAAGAAAGTCATGAGAATGGA  121

Query  133  TCATTTAAAAAAGAATACACAAAGATGGACA-ATAGCAGTGCAAATATCTCAGATGGAAG  191
            |||||| |||||||||||||||||||||||| | | | |||| ||||| | |||||||||
Sbjct  122  TCATTTGAAAAAGAATACACAAAGATGGACAGAAA-CGGTGCTAATATGTTAGATGGAAG  180

Query  192  AGTAGAAAGTGATGAAAATGGCTCATTTAAAAAAGACTACACAAAGATGGacaacaacaa  251
            |||||||||||||| ||| |||||||||| ||| || |||||||||||||| ||||||||
Sbjct  181  AGTAGAAAGTGATGCAAAGGGCTCATTTAGAAAGGATTACACAAAGATGGAGAACAACAA  240

Query  252  caacaacaaTGGTGCTAATATCTCAGATGGTATCTACAGAATTATACGAAGCTTCAAGAG  311
            ||||      ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct  241  CAAC------GGTGCTAATATCTCAGATGGTATCTACAGAATTATTCGCAGCTTCAAGAG  294

Query  312  TTTCTCTCACTTTTTCATTCGTTACGAAGAGGAAACGAAAGAGAGAGAGGCGGAGATTGA  371
            |||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||| ||
Sbjct  295  TTTCTCGCACTTTTTCATACGTTACGAAGAGGAGACGAAAGAGAGAGAAGCGGAGATGGA  354

Query  372  GATAGGATATCCGACGGAGGTGAAGCACTTGAGCCACATCGGAGTTGATGGAACGATGAC  431
            |||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct  355  GATAGGATTTCCAACGGACGTGAAGCACTTGAGCCACATCGGAGTTGATGGAACCATGAC  414

Query  432  CACTTTTGACAAGTCCTCCTCATCTTTTCCATTCGCCGGCTTTC-ATCTCAC-GGC  485
            |||||| |||||  |||||||||||||||||||| |||| |||| ||||||| |||
Sbjct  415  CACTTTCGACAACACCTCCTCATCTTTTCCATTCTCCGG-TTTCCATCTCACCGGC  469



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23459346649


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5